Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi1g1v0025700 |
Transcript ID | LotjaGi1g1v0025700.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Aspartate carbamoyltransferase; TAIR: AT3G20330.1 PYRIMIDINE B; Swiss-Prot: sp|Q43086|PYRB1_PEA Aspartate carbamoyltransferase 1, chloroplastic; TrEMBL-Plants: tr|I1JJC4|I1JJC4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0025700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:3111151..3115880) extracted from Lotus japonicus Gifu genome v1.2.
AGAACATTGACAAAAGATGCTAGGAATATTTTTGGTCAATGATGTAAACATTTGATTTGTTTGAAGAACATTAGAAAAAT CCAAGGCCCCTTAAAATGTGTAAACAAGAAAAGAAAAAGTACAAGACAGGCCCAAAAGAAAGAGGAAGAATAGATTGGGC TCTAGTGCTGCTGTACAGAACATTTGGTGTCATCTTCCTAGGTAGCATCCCTTATATATACTTGCTTCCTCCACAGTCCT AACGTTGTTTTGTAGCCGTTGTCTCTCTTCAAAGTAGCAAAACCAAAAACACTGTAACCTCGTCAACCACCTTCAAGGTA AACACTATTTCATTCTCAAATCAAAACTCTGTTGGATTTTCATGTTTTTTTCTTATAATCTTCAAAACCTTGTTGTATCT GAACTTTAGATTCTGCAGCCGCTTCTTTTTGAAGCGTTTGATTTATCTGGGGATACCCTTTGGCATAGAAAAACTCTATA AAGTGATTCCACTCAAACCTGATTATTTTATCTTATCTTTTGGTTTTTTCAATTCATTTCATGTCACTTTTATGACTTTT TGCTTCCTGGGTTGAAGTTGTTTTGGTGTTCTTATGGGTTTTTATGTGCTTGTATGATTCATTAAGGGCTTTGAAGTTCA TACCAAACGGGGTTTTTTTTTTTCTTGTGTACAGAACACAATGACTGCTGCTTCTTTGATGTTCTCATGCTCCACGCCTG TGGGAGTTTCTCATCCCAAAATGGCTGCAAAGTCACTTGCATGGAGTCCTTTGAAGTCAGTTTCATGTGGGGTTTTTGAA AGATCGAAGGTTTTGCACAAAGGTGATGATGGGATTATGTGCAAGGCACAGGCTATTCATGTTGAGAGTGCACCCCTTTC ATTCTCAAGTGGGCAGAAGTTTCAACTTGATGATGTGATTGAAGCTCAGCAGTTTGATAGGGATACTCTCAGTGCCATAT TTGAAATTGCAAAGAGTATGGAGAGTATAAAGCACAACTCATCTGGGAGCCAAATGCTGAAGGGGTACCTCATGGCTACC TTGTTCTATGAACCTTCAACTAGAACTAGGCTTTCATTTGAGTCTGCTATGAAAAGATTAGGTGGGGATGTTCTGACAAC TGAAAATGCTAGGGAGTTTTCATCTGCTGCCAAAGGAGAGACTCTTGAAGGTGGGGCATTTAAATTGACAATACATAGTT ATTTTGTGGGTTTATTTCATTGTCCTGTATGAGATTTATAGCAACTTTGTATTAGTTTCTCTTTACTCACATAAACTTCT CATGTTAATTGATTTTGGCTTTAGACGTGAGTCATGCACTTAATCTTCACGTTACTTTACTTTTTGCAGATACTATAAGA ACGGTTGAAGGGTACTCTGATATAATTGTGATGCGGCACTTTGAAAGTGGTGCTGCCAAAAGAGCGGCCGCAACTGCTAA CATTCCCGTAATCAATGCAGGAGATGGCCCTGGACAGCATCCCAGTCAGGTATGAACGAATTTTCGATGATTCTGTTCAA TGCTGCAAAAGCCGATGCTGCGCAAAGAACTTCAATTAGATAGGGACATAGGATGATACCTTTTTCCGGCTTATCATATA GTAGAGTTTGTCGCTTAGATTCTTCTGCCGTGCATGTGCTTGTGCTGAATGAGTTTATGTTGGTTTTCTTAGCTATTGTC ACTTCCAAGTCTCTGATTTTGTTTTGATTTAGCATTTATAGTGTGAGAAGGCAATTAATTAGCGTCACTGGTGCGCATAA ATAATAATAGCGTATTCAGTCCTTTTGGTTGCCGAAAGTATAATTGAGAGAGCACATATGCTTGCATCTTCCGTACTTGC TCCCATACGGTTCTTGCACTAGATGCTCTCACACTTGTGCTGAATGAGTTTATGTTGGTTTTCTTAACTATTGTCACTTC CAAGTCTCTGATTTTGTTTTGATTTAGCATTTATAGTGTGAAAAGGCAATGAATTAACGTCACTGATGCGCATAAATAAT AATAGCGTATTCAGTCCTTTTGGTTGCCGAAAGTATAATTGAGAGAGCACATATGCTTGCATCTTCCGTACTTGCTCCCA TACGGTTCTTGCACTAGATGCTCTCACACTTGTGCTGAATGAGTTTATATTGGTTTTCTTAACTATTGTCACTTCCAAGT CTCTGATTTTGTTTTGATTTAGCATTTATAGTGCGAAAAGGCAATGAATTAGCGTCACTGATGCGCATAAATAATAATAG CGTATTCAGTCCTTTTGGTTGCCGAAAGTATAATTGAGAGAGCACATATGCTTGCATCTTCCGTACTTGCTCCCATACGG TTCTTGCACTAGATGCTCTCACACTTGTGCTGAATGAGTTTATGTTGGTTTTCTTAACTATTGTCACTTCCAAGTCTCTG ATTTTGTTTTGATTTAGCATTTATAGTGTGAAAAGGCAATGAATTAACGTCACTGATGCGCATAAATAATAATAGCGTAT TCAGTCCTTTTGGTTGCCGAAAGTATAATTGAGAGAGCACATATGCTTGCATCTTCCGTACTTGCTCCCATACGGTTCTT GCACTAGATGCTCTCACACTTGTGCTGAATGAGTTTATGTTGGTTTTCTTAACTATTGTCACTTCCAAGTCTCTGATTTT GTTTTGATTTAGCATTTATAGTGCGAAAAGGCAATGAATTAGCGTCACTGATGCGCATAAATAATAATAGCGTATTCAGT CCTTTTGGTTGCCGAAAGTATAATTGAGAGAGCACATATGCTTGCATCTTCCGTACTTGCTCCCATACGGTTCTTGCACT AGATGCTCTCACACTTGTTTTCTTTTTTCTCTCATCGAGACTGCCAAGAATCATGAAACATAATCATTGTATATGGGGTT TTTAATTGTTGTCTGTTATATTGGCTATAAGGATAGAGACTTTTAGAGGGCAGAGCTTTCACCACTTCATCTTCATTTTG TGGAATTGCTTTACTTGCTACCTTCTGACACAAATGTTCTGTAGTGTTACATTGCCTCTGAAACTTTTACACAAAAATCA GACACTTCTACATATTATATCTGAGAAGTTGATGAGATTGAAGGGGTTTATGGTGACTTAGGCTCATACAGCGAAATTTG TTTGTTTATTTACGAGTCATGACTTCAAATTTTCTCGTTTTCTAGCCAATTGTAATAACATAATATAGACTTCTCCACCA AAAAGTACCCTCAAGTATAGAATACTAGATTAGTCTTTTGGTACATACCTTGTTGTATGTTTTATTTGCAGTTGACAAGA TGGTTATGCATATGTTTTTCCTTAGTATTTTCTTGGAGAGCAAGATATTTGTATCGATTGCTGAGCATTCTATAATATTT GTTGATACTAATTTGAATGATAAATGGATGGTACTGTTTTTTATTCAAAACTCTTGCTTTTTCAAACTTCTCAGGCACTG CTAGATGTCTATACCATTGAAAGAGAGATAGGAAAACTGGACGGAATTAGAGTTGGGCTTGTGGGAGACCTAGCTAATGG GAGGACAGTTCGCTCACTCGCATACTTACTTGCCAAGTACCAGGATGTGAAACTTTATTTTGTCTCTCCTAATGTGGTCA AAATGAAGGTAACTGTAGTAAATACTAGTTATGATTTCATGAACAGAATTGATGTATGTTTAGATATCCGTTGGCACCAG TGCAAACAAATGTTAGCATTCACTTCGAGGCAAAAAGTGAAAGGAACTCTTTTTTTTTGTTGACATGAAAGTTTGTTCAC ATTGCACTCAACTGATATCCAAACACAATGTTAGGGACATTTCAGGATATGATGAGTTATGGAGTTTTCTTTTTTGTAGG ATGATATAAAAGAGTACCTAACATCAAAGGGAGTTGAGTGGGAAGAAAGTGCTGACTTGATGGAAGTGGCTTCTAAGTGC GACGTAGTTTATCAAACTCGCATTCAGAAAGAAAGGTTTGAAGGGAAAATTGATCTTTATGAACAGGCAAGAGGCAAGTA TATTGTGAATCAGGATGTTCTAAATGTGATGCAAAAACATGCTGTGGTTATGCACCCTCTTCCAAGACTAGATGAAGTAA GAACATCATCACTTGATATCTACACTCTAGTTATGAACATAAGCATTAAGATTAAATAAACTAAATTGGTTTGGTCCTTT AATTTGATGCAGATTGAAGTTAATGTTGATGATGATCCAAGAGCTGCGTACTTTAGGCAGGCAAAGAATGGTTTATATAT TAGGATGGCTCTGTTGAAGGTTTTGCTTCTTGGTTGGTGAAGGCGCATTCACTTTCCAAGTGAGTGAGATGATCTAATCT CACATTGTTTGAGTTGTTATCTTCCTTTCCTTTCCTTGTTTTTGTCTATTGGTGTCACAGTCTCACAGATTTAGTGAGAG TGAGAGAGAGAGAGAGCGGAGGTTTTCTTTTTTTAACTTTAGTAAAATTATCTTTGAAGTTCAAGGCTTTGTTTTTTGTG TGTCTTTCTCTGAGCATGCAATGTTCTCTAACTTAGAACATGAGCTAAGCCTAAATTATTATTACTATTATAACGTGGAC TAAACTAGAGATCCATATCCTTAGAAATTTGTTTCCCTTGACATGATGTTGGTCATGCTGTGTTCACCCTACAGAATAAT GTGGGAATGATAAAATTTTGGGTTCAACTTTGCTGAAAGGATCTTATTTCCATTGATAAATGACCAAGGAAAATGTTTGT TTTGGACGAG
CDS sequence (LotjaGi1g1v0025700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTGCTGCTTCTTTGATGTTCTCATGCTCCACGCCTGTGGGAGTTTCTCATCCCAAAATGGCTGCAAAGTCACTTGC ATGGAGTCCTTTGAAGTCAGTTTCATGTGGGGTTTTTGAAAGATCGAAGGTTTTGCACAAAGGTGATGATGGGATTATGT GCAAGGCACAGGCTATTCATGTTGAGAGTGCACCCCTTTCATTCTCAAGTGGGCAGAAGTTTCAACTTGATGATGTGATT GAAGCTCAGCAGTTTGATAGGGATACTCTCAGTGCCATATTTGAAATTGCAAAGAGTATGGAGAGTATAAAGCACAACTC ATCTGGGAGCCAAATGCTGAAGGGGTACCTCATGGCTACCTTGTTCTATGAACCTTCAACTAGAACTAGGCTTTCATTTG AGTCTGCTATGAAAAGATTAGGTGGGGATGTTCTGACAACTGAAAATGCTAGGGAGTTTTCATCTGCTGCCAAAGGAGAG ACTCTTGAAGATACTATAAGAACGGTTGAAGGGTACTCTGATATAATTGTGATGCGGCACTTTGAAAGTGGTGCTGCCAA AAGAGCGGCCGCAACTGCTAACATTCCCGTAATCAATGCAGGAGATGGCCCTGGACAGCATCCCAGTCAGGCACTGCTAG ATGTCTATACCATTGAAAGAGAGATAGGAAAACTGGACGGAATTAGAGTTGGGCTTGTGGGAGACCTAGCTAATGGGAGG ACAGTTCGCTCACTCGCATACTTACTTGCCAAGTACCAGGATGTGAAACTTTATTTTGTCTCTCCTAATGTGGTCAAAAT GAAGGATGATATAAAAGAGTACCTAACATCAAAGGGAGTTGAGTGGGAAGAAAGTGCTGACTTGATGGAAGTGGCTTCTA AGTGCGACGTAGTTTATCAAACTCGCATTCAGAAAGAAAGGTTTGAAGGGAAAATTGATCTTTATGAACAGGCAAGAGGC AAGTATATTGTGAATCAGGATGTTCTAAATGTGATGCAAAAACATGCTGTGGTTATGCACCCTCTTCCAAGACTAGATGA AATTGAAGTTAATGTTGATGATGATCCAAGAGCTGCGTACTTTAGGCAGGCAAAGAATGGTTTATATATTAGGATGGCTC TGTTGAAGGTTTTGCTTCTTGGTTGGTGA
Protein sequence (LotjaGi1g1v0025700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTAASLMFSCSTPVGVSHPKMAAKSLAWSPLKSVSCGVFERSKVLHKGDDGIMCKAQAIHVESAPLSFSSGQKFQLDDVI EAQQFDRDTLSAIFEIAKSMESIKHNSSGSQMLKGYLMATLFYEPSTRTRLSFESAMKRLGGDVLTTENAREFSSAAKGE TLEDTIRTVEGYSDIIVMRHFESGAAKRAAATANIPVINAGDGPGQHPSQALLDVYTIEREIGKLDGIRVGLVGDLANGR TVRSLAYLLAKYQDVKLYFVSPNVVKMKDDIKEYLTSKGVEWEESADLMEVASKCDVVYQTRIQKERFEGKIDLYEQARG KYIVNQDVLNVMQKHAVVMHPLPRLDEIEVNVDDDPRAAYFRQAKNGLYIRMALLKVLLLGW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 2 | 2 | - | – | |
Phobius | 1 | 22 | 22 | - | – | |
SignalP_GRAM_POSITIVE | 1 | 19 | 19 | - | – | |
Phobius | 3 | 14 | 12 | - | – | |
Phobius | 15 | 22 | 8 | - | – | |
Phobius | 23 | 382 | 360 | - | – | |
PANTHER | 47 | 380 | 334 | 5.7E-194 | – | |
PANTHER | 47 | 380 | 334 | 5.7E-194 | – | |
SUPERFAMILY | 74 | 379 | 306 | 8.25E-96 | ||
Hamap | 76 | 381 | 306 | 35.353 | ||
TIGRFAM | 78 | 379 | 302 | 2.1E-106 | ||
Gene3D | 79 | 376 | 298 | 2.3E-113 | ||
Pfam | 79 | 219 | 141 | 2.2E-45 | ||
PRINTS | 112 | 134 | 23 | 5.7E-40 | – | |
ProSitePatterns | 122 | 129 | 8 | - | ||
PRINTS | 122 | 141 | 20 | 1.6E-26 | ||
PRINTS | 152 | 161 | 10 | 5.7E-40 | – | |
PRINTS | 206 | 223 | 18 | 5.7E-40 | – | |
PRINTS | 207 | 218 | 12 | 1.6E-26 | ||
Gene3D | 207 | 366 | 160 | 2.3E-113 | ||
Pfam | 226 | 376 | 151 | 4.6E-32 | ||
PRINTS | 298 | 307 | 10 | 5.7E-40 | – | |
PRINTS | 334 | 343 | 10 | 1.6E-26 | ||
PRINTS | 338 | 343 | 6 | 5.7E-40 | – | |
PRINTS | 344 | 367 | 24 | 1.6E-26 | ||
PRINTS | 360 | 374 | 15 | 5.7E-40 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Aspartate carbamoyltransferase activity | Catalysis of the reaction: L-aspartate + carbamoyl phosphate = N-carbamoyl-L-aspartate + H(+) + phosphate. | ||
Biological process | 'de novo' pyrimidine nucleobase biosynthetic process | The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors. | ||
Biological process | Cellular amino acid metabolic process | The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells. | ||
Molecular function | Amino acid binding | Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents. | ||
Molecular function | Carboxyl- or carbamoyltransferase activity | Catalysis of the transfer of a carboxyl- or carbamoyl group from one compound (donor) to another (acceptor). |
Expression pattern of LotjaGi1g1v0025700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…