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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0025700 |
| Transcript ID | LotjaGi1g1v0025700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aspartate carbamoyltransferase; TAIR: AT3G20330.1 PYRIMIDINE B; Swiss-Prot: sp|Q43086|PYRB1_PEA Aspartate carbamoyltransferase 1, chloroplastic; TrEMBL-Plants: tr|I1JJC4|I1JJC4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0025700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:3111601..3115200) extracted from Lotus japonicus Gifu genome v1.2.
ATGACTGCTGCTTCTTTGATGTTCTCATGCTCCACGCCTGTGGGAGTTTCTCATCCCAAAATGGCTGCAAAGTCACTTGC ATGGAGTCCTTTGAAGTCAGTTTCATGTGGGGTTTTTGAAAGATCGAAGGTTTTGCACAAAGGTGATGATGGGATTATGT GCAAGGCACAGGCTATTCATGTTGAGAGTGCACCCCTTTCATTCTCAAGTGGGCAGAAGTTTCAACTTGATGATGTGATT GAAGCTCAGCAGTTTGATAGGGATACTCTCAGTGCCATATTTGAAATTGCAAAGAGTATGGAGAGTATAAAGCACAACTC ATCTGGGAGCCAAATGCTGAAGGGGTACCTCATGGCTACCTTGTTCTATGAACCTTCAACTAGAACTAGGCTTTCATTTG AGTCTGCTATGAAAAGATTAGGTGGGGATGTTCTGACAACTGAAAATGCTAGGGAGTTTTCATCTGCTGCCAAAGGAGAG ACTCTTGAAGGTGGGGCATTTAAATTGACAATACATAGTTATTTTGTGGGTTTATTTCATTGTCCTGTATGAGATTTATA GCAACTTTGTATTAGTTTCTCTTTACTCACATAAACTTCTCATGTTAATTGATTTTGGCTTTAGACGTGAGTCATGCACT TAATCTTCACGTTACTTTACTTTTTGCAGATACTATAAGAACGGTTGAAGGGTACTCTGATATAATTGTGATGCGGCACT TTGAAAGTGGTGCTGCCAAAAGAGCGGCCGCAACTGCTAACATTCCCGTAATCAATGCAGGAGATGGCCCTGGACAGCAT CCCAGTCAGGTATGAACGAATTTTCGATGATTCTGTTCAATGCTGCAAAAGCCGATGCTGCGCAAAGAACTTCAATTAGA TAGGGACATAGGATGATACCTTTTTCCGGCTTATCATATAGTAGAGTTTGTCGCTTAGATTCTTCTGCCGTGCATGTGCT TGTGCTGAATGAGTTTATGTTGGTTTTCTTAGCTATTGTCACTTCCAAGTCTCTGATTTTGTTTTGATTTAGCATTTATA GTGTGAGAAGGCAATTAATTAGCGTCACTGGTGCGCATAAATAATAATAGCGTATTCAGTCCTTTTGGTTGCCGAAAGTA TAATTGAGAGAGCACATATGCTTGCATCTTCCGTACTTGCTCCCATACGGTTCTTGCACTAGATGCTCTCACACTTGTGC TGAATGAGTTTATGTTGGTTTTCTTAACTATTGTCACTTCCAAGTCTCTGATTTTGTTTTGATTTAGCATTTATAGTGTG AAAAGGCAATGAATTAACGTCACTGATGCGCATAAATAATAATAGCGTATTCAGTCCTTTTGGTTGCCGAAAGTATAATT GAGAGAGCACATATGCTTGCATCTTCCGTACTTGCTCCCATACGGTTCTTGCACTAGATGCTCTCACACTTGTGCTGAAT GAGTTTATATTGGTTTTCTTAACTATTGTCACTTCCAAGTCTCTGATTTTGTTTTGATTTAGCATTTATAGTGCGAAAAG GCAATGAATTAGCGTCACTGATGCGCATAAATAATAATAGCGTATTCAGTCCTTTTGGTTGCCGAAAGTATAATTGAGAG AGCACATATGCTTGCATCTTCCGTACTTGCTCCCATACGGTTCTTGCACTAGATGCTCTCACACTTGTGCTGAATGAGTT TATGTTGGTTTTCTTAACTATTGTCACTTCCAAGTCTCTGATTTTGTTTTGATTTAGCATTTATAGTGTGAAAAGGCAAT GAATTAACGTCACTGATGCGCATAAATAATAATAGCGTATTCAGTCCTTTTGGTTGCCGAAAGTATAATTGAGAGAGCAC ATATGCTTGCATCTTCCGTACTTGCTCCCATACGGTTCTTGCACTAGATGCTCTCACACTTGTGCTGAATGAGTTTATGT TGGTTTTCTTAACTATTGTCACTTCCAAGTCTCTGATTTTGTTTTGATTTAGCATTTATAGTGCGAAAAGGCAATGAATT AGCGTCACTGATGCGCATAAATAATAATAGCGTATTCAGTCCTTTTGGTTGCCGAAAGTATAATTGAGAGAGCACATATG CTTGCATCTTCCGTACTTGCTCCCATACGGTTCTTGCACTAGATGCTCTCACACTTGTTTTCTTTTTTCTCTCATCGAGA CTGCCAAGAATCATGAAACATAATCATTGTATATGGGGTTTTTAATTGTTGTCTGTTATATTGGCTATAAGGATAGAGAC TTTTAGAGGGCAGAGCTTTCACCACTTCATCTTCATTTTGTGGAATTGCTTTACTTGCTACCTTCTGACACAAATGTTCT GTAGTGTTACATTGCCTCTGAAACTTTTACACAAAAATCAGACACTTCTACATATTATATCTGAGAAGTTGATGAGATTG AAGGGGTTTATGGTGACTTAGGCTCATACAGCGAAATTTGTTTGTTTATTTACGAGTCATGACTTCAAATTTTCTCGTTT TCTAGCCAATTGTAATAACATAATATAGACTTCTCCACCAAAAAGTACCCTCAAGTATAGAATACTAGATTAGTCTTTTG GTACATACCTTGTTGTATGTTTTATTTGCAGTTGACAAGATGGTTATGCATATGTTTTTCCTTAGTATTTTCTTGGAGAG CAAGATATTTGTATCGATTGCTGAGCATTCTATAATATTTGTTGATACTAATTTGAATGATAAATGGATGGTACTGTTTT TTATTCAAAACTCTTGCTTTTTCAAACTTCTCAGGCACTGCTAGATGTCTATACCATTGAAAGAGAGATAGGAAAACTGG ACGGAATTAGAGTTGGGCTTGTGGGAGACCTAGCTAATGGGAGGACAGTTCGCTCACTCGCATACTTACTTGCCAAGTAC CAGGATGTGAAACTTTATTTTGTCTCTCCTAATGTGGTCAAAATGAAGGTAACTGTAGTAAATACTAGTTATGATTTCAT GAACAGAATTGATGTATGTTTAGATATCCGTTGGCACCAGTGCAAACAAATGTTAGCATTCACTTCGAGGCAAAAAGTGA AAGGAACTCTTTTTTTTTGTTGACATGAAAGTTTGTTCACATTGCACTCAACTGATATCCAAACACAATGTTAGGGACAT TTCAGGATATGATGAGTTATGGAGTTTTCTTTTTTGTAGGATGATATAAAAGAGTACCTAACATCAAAGGGAGTTGAGTG GGAAGAAAGTGCTGACTTGATGGAAGTGGCTTCTAAGTGCGACGTAGTTTATCAAACTCGCATTCAGAAAGAAAGGTTTG AAGGGAAAATTGATCTTTATGAACAGGCAAGAGGCAAGTATATTGTGAATCAGGATGTTCTAAATGTGATGCAAAAACAT GCTGTGGTTATGCACCCTCTTCCAAGACTAGATGAAGTAAGAACATCATCACTTGATATCTACACTCTAGTTATGAACAT AAGCATTAAGATTAAATAAACTAAATTGGTTTGGTCCTTTAATTTGATGCAGATTGAAGTTAATGTTGATGATGATCCAA GAGCTGCGTACTTTAGGCAGGCAAAGAATGGTTTATATATTAGGATGGCTCTGTTGAAGGTTTTGCTTCTTGGTTGGTGA
CDS sequence (LotjaGi1g1v0025700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTGCTGCTTCTTTGATGTTCTCATGCTCCACGCCTGTGGGAGTTTCTCATCCCAAAATGGCTGCAAAGTCACTTGC ATGGAGTCCTTTGAAGTCAGTTTCATGTGGGGTTTTTGAAAGATCGAAGGTTTTGCACAAAGGTGATGATGGGATTATGT GCAAGGCACAGGCTATTCATGTTGAGAGTGCACCCCTTTCATTCTCAAGTGGGCAGAAGTTTCAACTTGATGATGTGATT GAAGCTCAGCAGTTTGATAGGGATACTCTCAGTGCCATATTTGAAATTGCAAAGAGTATGGAGAGTATAAAGCACAACTC ATCTGGGAGCCAAATGCTGAAGGGGTACCTCATGGCTACCTTGTTCTATGAACCTTCAACTAGAACTAGGCTTTCATTTG AGTCTGCTATGAAAAGATTAGGTGGGGATGTTCTGACAACTGAAAATGCTAGGGAGTTTTCATCTGCTGCCAAAGGAGAG ACTCTTGAAGATACTATAAGAACGGTTGAAGGGTACTCTGATATAATTGTGATGCGGCACTTTGAAAGTGGTGCTGCCAA AAGAGCGGCCGCAACTGCTAACATTCCCGTAATCAATGCAGGAGATGGCCCTGGACAGCATCCCAGTCAGGCACTGCTAG ATGTCTATACCATTGAAAGAGAGATAGGAAAACTGGACGGAATTAGAGTTGGGCTTGTGGGAGACCTAGCTAATGGGAGG ACAGTTCGCTCACTCGCATACTTACTTGCCAAGTACCAGGATGTGAAACTTTATTTTGTCTCTCCTAATGTGGTCAAAAT GAAGGATGATATAAAAGAGTACCTAACATCAAAGGGAGTTGAGTGGGAAGAAAGTGCTGACTTGATGGAAGTGGCTTCTA AGTGCGACGTAGTTTATCAAACTCGCATTCAGAAAGAAAGGTTTGAAGGGAAAATTGATCTTTATGAACAGGCAAGAGGC AAGTATATTGTGAATCAGGATGTTCTAAATGTGATGCAAAAACATGCTGTGGTTATGCACCCTCTTCCAAGACTAGATGA AATTGAAGTTAATGTTGATGATGATCCAAGAGCTGCGTACTTTAGGCAGGCAAAGAATGGTTTATATATTAGGATGGCTC TGTTGAAGGTTTTGCTTCTTGGTTGGTGA
Protein sequence (LotjaGi1g1v0025700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTAASLMFSCSTPVGVSHPKMAAKSLAWSPLKSVSCGVFERSKVLHKGDDGIMCKAQAIHVESAPLSFSSGQKFQLDDVI EAQQFDRDTLSAIFEIAKSMESIKHNSSGSQMLKGYLMATLFYEPSTRTRLSFESAMKRLGGDVLTTENAREFSSAAKGE TLEDTIRTVEGYSDIIVMRHFESGAAKRAAATANIPVINAGDGPGQHPSQALLDVYTIEREIGKLDGIRVGLVGDLANGR TVRSLAYLLAKYQDVKLYFVSPNVVKMKDDIKEYLTSKGVEWEESADLMEVASKCDVVYQTRIQKERFEGKIDLYEQARG KYIVNQDVLNVMQKHAVVMHPLPRLDEIEVNVDDDPRAAYFRQAKNGLYIRMALLKVLLLGW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 19 | 19 | - | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| Phobius | 15 | 22 | 8 | - | – | |
| Phobius | 23 | 382 | 360 | - | – | |
| PANTHER | 47 | 380 | 334 | 5.7E-194 | – | |
| PANTHER | 47 | 380 | 334 | 5.7E-194 | – | |
| SUPERFAMILY | 74 | 379 | 306 | 8.25E-96 | ||
| Hamap | 76 | 381 | 306 | 35.353 | ||
| TIGRFAM | 78 | 379 | 302 | 2.1E-106 | ||
| Gene3D | 79 | 376 | 298 | 2.3E-113 | ||
| Pfam | 79 | 219 | 141 | 2.2E-45 | ||
| PRINTS | 112 | 134 | 23 | 5.7E-40 | – | |
| ProSitePatterns | 122 | 129 | 8 | - | ||
| PRINTS | 122 | 141 | 20 | 1.6E-26 | ||
| PRINTS | 152 | 161 | 10 | 5.7E-40 | – | |
| PRINTS | 206 | 223 | 18 | 5.7E-40 | – | |
| PRINTS | 207 | 218 | 12 | 1.6E-26 | ||
| Gene3D | 207 | 366 | 160 | 2.3E-113 | ||
| Pfam | 226 | 376 | 151 | 4.6E-32 | ||
| PRINTS | 298 | 307 | 10 | 5.7E-40 | – | |
| PRINTS | 334 | 343 | 10 | 1.6E-26 | ||
| PRINTS | 338 | 343 | 6 | 5.7E-40 | – | |
| PRINTS | 344 | 367 | 24 | 1.6E-26 | ||
| PRINTS | 360 | 374 | 15 | 5.7E-40 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Aspartate carbamoyltransferase activity | Catalysis of the reaction: L-aspartate + carbamoyl phosphate = N-carbamoyl-L-aspartate + H(+) + phosphate. | ||
| Biological process | 'de novo' pyrimidine nucleobase biosynthetic process | The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors. | ||
| Biological process | Cellular amino acid metabolic process | The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells. | ||
| Molecular function | Amino acid binding | Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents. | ||
| Molecular function | Carboxyl- or carbamoyltransferase activity | Catalysis of the transfer of a carboxyl- or carbamoyl group from one compound (donor) to another (acceptor). |
Expression pattern of LotjaGi1g1v0025700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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