Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0025900 |
| Transcript ID | LotjaGi1g1v0025900.3 |
| Related isoforms 7 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SWAP (Suppressor-of-white-APricot)/surp domain protein, putative; TAIR: AT5G55100.2 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; Swiss-Prot: sp|Q3USH5|SFSWA_MOUSE Splicing factor, suppressor of white-apricot homolog; TrEMBL-Plants: tr|A0A0B2S0T7|A0A0B2S0T7_GLYSO Protein suppressor of white apricot; Found in the gene: LotjaGi1g1v0025900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:3120892..3126179) extracted from Lotus japonicus Gifu genome v1.2.
TTCATATCCATGGTCAGAGTCAGAGTAACCATTTCAAATTCATCATCAAATTGGAAGCAATCGGAGAGTGGAGAAACGAT GGATCTCGAGTTGGTTGGGCGACACGCGATGTTCTTCGACGACGACGCCATGGCGGCGTTCGTGAACTCGCCGGAAGCTC TGGTTGACTGGAACTCCCTCTCCATCGATCGCTACGATGTTCGCCACCTTCTCTCCGGTCCCCTTCCTCCCCGCCTCAAG CGCCGCCCTCCTCCTCCCGAACCTGACCTCGATTACGAACGCTATCTCGACCTCCCTTCATCATCCCCTGACCATTACCA ACAACAACAACCACAAGGTAAACCTAATCGTACCGTACACAGCACTTTTTTCCTCTTCACTTTTTCCATTTCGTTTTGTT TTACTATTATTGGAGTTGCTTGATGGAATTGTAGTAGAAGAAATGGGAAATTTGATTGATGATTTTTGTTCTGACTGTTT ATGTTTTGTGTTGCTCTCAGAAGAGAAATTGAAAAAAAAATTGTGAGGGTTGAGAGGTTAACTAGGGTAGAGGAAGTTTG TAAGAAAACTTCGGAAAAGTTTTGACTAGAAAATTGGTTTTGGACTTGATGGAGTTCACCTAGTGGCGATGATGATAAGG CTTGGTTGTTGACTTTTACTTGATGATGTTGCTTCTTAATGCGATGTAGGTAGAATGTTTCCTTACATGACATGATGAGA GGTTTGCTATGAATGAAATGATGTTAGATTGGTTCTCTTTTGTGTATTGTTATACAGAGGACTTCATATATCTTTGTAAT TTATTGTGTGTATAGAGTGAAGGCTTTTAATGAATCACTAGTAATCTATGAAGCACCGATTTCGACACAACACTTACACT TACACCTGCGACACGGCTAACCTCCAAAAAGTAGGACATCGGGACCCTGCATAGTAAGTTAAGAAAACGAGCTCTATGAC AATGAGCTTCATAAAAAGATACTAAAAAACACCGCTTTGTCTAAACAACAGAGCTAATTTATCTAACAGCTTCGCCTCCT TGTTTATTATTGTCATTGAAGTCTAGCCTCTAGTTCATCAAGTGATAAATTAGTAATTTCTTTAATGATTTTTAAAAAAA AATAAATGATGTAAATTCCCTAGAGGTGTCCAGCCAAGAAGAGATATCGGCTCAAGTGTCCGAGCTGCAAATTATTATTT TGTATTTGGACACGGTGAAGAATTGTGTTACAAATGTCATGTTGGTGTTGGAGACCAGCAGAGGTATCCGTGCTTCATAG CTAGTAATTTTATAATATTTGTCCTTAAAATAATCTTTAAACAATTGTGTTCAATTCACTCATCGTTTGGACACACTCTT ATATTTGGTTGAGATATTACTTTAGTTGAGGCAATTAGGCGATGTGCAACGTTGGCTATCAAGTCAAAAAATTTTCTCTC TTTTGTCAGTGGATGTTGGAACAACTTTTTTCCCAACTTCCACCTAAGAATGTTGAGTTCTTTTGTTTGTACAACAACAA TCTCCACATTTGCAGGATGGACTGTAATTTGCTACGGTTCCTGTGTCAGAATGCAAGTAAGGATATTTTCTCCTGGCTTC CGGTTATGTTTAATTTCTTTGGTGTTAGTGTCTTTACCATTCTAGGTGTATGATATTGTTGCTCTTGAGAATTATATGTG ATTCTGATCATGGCTGTCGCCTTTCTGTGTTTGTTTAGATAATGATTCAGGTCCAGTGAATTCAGCTGGCTATCGAGCTG TTGCATTTTCATATGAAAATTCTAACGTGTCCATGGAGACGAAGGACAGTGATACTGACGCTGGTTTTCATCCTAACTTC CCAGTACCAGAAAACTTACTCCATAACCTGGTGAGTATCCCATCTCTTAAAATATAGTTTGTTGTGTTATTTTCAGATGT TACACATTTAATTGACGTTTCATTGTTTAACCAATGTGATTAGGTGATAATTGTCTAGGGTACATGTGTTATTCTAAGGC TTATGATGTCTAAGTTTCAGATGCTCGGAGCATATATGGAGTTCTTTTGACTCAAGGTAGCCATTCACAGGCACCTTGTT TCCTTTTGATATCATGAGAAGGGGTCATGCAGGTGGGATTAGGATGATAGAAATTCGTTGATTCTTTACCTCTTGAGAGC CAATGGATTGAAAAATATCTTCATAAAGTTCTGTTTCTTGATCTGTATGATTATCCAAGTATATGTGAGGTTTTCTTGTG TTTTTTAGTAAGATCTTTATGTACCTATATATTCTGCTTGTAAACCCCCTTTTCAAAATTATACTTTGTTCTAATATTGA AATTCACATTTGCTGATGAAGAAACCATTTTTATTTGTTTTTCTTTTCCAGCCTCCAAGTGATAAGGTACATCAGATTAT TTCAAGGACTGCAACGTTTGTAAGAAAACATGGAAGCCAGTCAGAAATTATTCTGAGGGTGAAGCAAGGAGATAATCCAA CATTTGGCTTCCTGATGCCTGATCATCATCTTCATCCATATTTTAGGTTTCTTGTTGATCATCAAGAACTTTTGAAAGCT AACATAGACGACGGTGACTCAACTGTGGACAAGAATAAAAGTAAGGGGCTTGATCAAACGGGTGGTGCACTGTCTTTGCT TGGATCTGTCTATGGATCTGGAGAGGATGAAGATGGTACAACTGAGAATACTTGTGACTTTGAAAGAGACAAATGTGAGG GAGCTGCTGTTGATGCTGCTGGTACAAGTGCTTCCCCAGAAACAGAACAGGCTGAATCATCTTCAAATACTGCCAATAAG GATGGAAGCATATCTAAAAGTCCAGTGCCCTCTTTGAAAGAAAGAGTCCCTGTTATTAAGCGGAATCACTCTATCAGTAC TGTTAAGACAGCGACTGCAGCTCGAGCAAAAACAGCTGATGACTTGGATTCAGCATCTAATGCTGCAAACAAGTCACAAA CTTATGTGCCTAGTACTGCTAAGATTGAACTACCTGTTGTTGAACCTCCATCTGACTTGAAAAGAGTTATTGAGAGGATA GTTGAGTTCGTCTTAAAAAATGGCAAACAAGTTGAGGCTGTTCTTGCTGAACAAGATCGTGCTCATGGAAGGTTCCCATT TCTTCTGCCATCTAATCGATATCATACTTACTATCTAAAAGCTCTTCAAAATGCTGACGAGGTGTGTTTCTCAGTTGTAT TTTCCTGCTATCCTTTTTGTAACTATTTTGTTGGGGTTAAGGAGGTATTTTATGCACCAAGTAAATTCAATGAATACTTT AGGACACGTTCGTTTGATGAATTTTAAGGTATTGCTAAATGCATATTTTAGCTGCAACTAACTGATCTTTCTATTTGCTT TCAGGGTAAGTTACCAGGCAAGGACCACCAGAAACACAATTCATCAGGTCGTGCAGGGGACAATACTGCTGTACATGAAG AAAGTGATGATCTCTCATGTGGATCTATGGGTTCTGATCTACCAAATGATATAGACAGAAAAGAGAAATTCAAGATGATT ATTGGCAAGTCAAAAAAGGATGGTCAAGATCCAACTCCCAAAGACTGCCATTCTCAAAACACAGTTGGCATGGATGCAGC ATCAGCAGCTGCTATTCTTCAGGCTGCGACTAGGGGTATTAAAAACCCTAATTTAGATATTTTTACCAAGACATCAAGTA GTAGTGTTCATGGCCTTGGAGGTGATGGTGGGTATTTGTCCACTTTTCATCAAAATCTGGATGCTCCTATCCCTGTTACC AAGGCTATTGCAGAAACAGTAGCTATTGCCGCAGCTAGGGAAGCAGACTCCTCTGAAGCACATATGACTAAAGAGCAGAA ACTTAAGGCAGAGAGATTGAAACGAGCAAAGATGTTTGCAGCCATGCTAAAAAGTGGAGTTGGAGCATTGAAAAATGACC TGCCACGAGCTTTATCCGTTGAGCCACCTGGCTCTGGTCTTTCAGGTTCAGATGCTGAGACTGGGAATCCTGTGGTTAAA GAAAGGGAAGGAAGCTCCGTTCCATTTGATGTGGATAATTCAGATATAAGTAAGTCTGAGGAGAAGCATTCTATTGATGA TTCAGATAAAAGTCAGAAATCTGAGGAGAAACATGCTGTTGATGATATTGAAAGGCGATCAAAAAGAAAGTACCGTTCCA GATCTAGTAGACATGAAGAGGAGGAAGAAGAGGAGGAGGAGGAGGAAGAAGAAAAGAGAGAAGATGTAAGGGATCATAAA AGATCCAGAAAAAAGCATCGATCTCATCGATCTTCACACACCAGTCGGGACAGGGATAGGGACGGACGCAAGCACAAGAG AAGACATTCCTCCTCGAAAGACAAGTATTCTTACAGGGGAGCTAAACATGGCATCTCTGATGATGAGCATCAACACTCAA GTCATCATCATAAATACGATAGCTCCTCCGATGAAAAGCACCGATCTTCAAGACGACGACAAAGAGAAGACAGCATGTCA GACCATGAGCATAAACATTCACGACGGCATAAACATGAGACCTCATCTGAGGATGAGCGTAGACACCGAAGCAGACATAC AAAGCATAAGAGCAGATCTCATGTTGAAAGAGAATCAGAGTTGGAGGAGGGGGAGGTAATGAAATCAGATAAGTCTCAAC AAGCAAGTGAGGTTGAACGTGCTAGCAGAGAGCCTTCTGCCAGTTTATCGAATGCAAACCATGGGCCAGAAATAAGTGAT GTCTCTGATGAGCTTAGAGCCAAAATTCGAGCCATGTTGGCGGCTAACTTATAAAAGCTTCACAGGGTTGATGGCAACTC TATTGTTTTTCCTCTGTAATATCATGTACTCCATTTTCCCATCAGGCAGAAATCGTTATTGATTTGCTTCTTGATTCCTT TATTTGACTTTGTCTTACCTCGCCAATTGAATAGATTCAGGTAGCAGTCAGGATAATTTTGCGTATCAATTTTTAGTAAT TACTAACACTAATAGGCATTAACATGAGAAGGGGGTTATTTCCCTTTCAATTTTGAACAAACTAACAATAAAGATATGCT CAAGATAGTTGCTTTGGTCTTCATAGTATAAACCCTTTTTCTTTTTCTGTTTCATTTCGTAAGTGTTCTAATTTCAAAAA CTACAAAGTGCCGAATCTATGTATCATTAAAATAGAGTTGTAGAAAAAAAACTAGAAATGGTTAAAATTTTGTTTTCCTC TTTTAAAGTTCACCAAAATTTTCATTTAGTCTCAATTTATGTTTTCAATTAGAGTTGAAGTTAGACTTTTTTTTGTTACA AGTATTCT
CDS sequence (LotjaGi1g1v0025900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTCAGAGTCAGAGTAACCATTTCAAATTCATCATCAAATTGGAAGCAATCGGAGAGTGGAGAAACGATGGATCTCGA GTTGGTTGGGCGACACGCGATGTTCTTCGACGACGACGCCATGGCGGCGTTCGTGAACTCGCCGGAAGCTCTGGTTGACT GGAACTCCCTCTCCATCGATCGCTACGATGTTCGCCACCTTCTCTCCGGTCCCCTTCCTCCCCGCCTCAAGCGCCGCCCT CCTCCTCCCGAACCTGACCTCGATTACGAACGCTATCTCGACCTCCCTTCATCATCCCCTGACCATTACCAACAACAACA ACCACAAGATAATGATTCAGGTCCAGTGAATTCAGCTGGCTATCGAGCTGTTGCATTTTCATATGAAAATTCTAACGTGT CCATGGAGACGAAGGACAGTGATACTGACGCTGGTTTTCATCCTAACTTCCCAGTACCAGAAAACTTACTCCATAACCTG CCTCCAAGTGATAAGGTACATCAGATTATTTCAAGGACTGCAACGTTTGTAAGAAAACATGGAAGCCAGTCAGAAATTAT TCTGAGGGTGAAGCAAGGAGATAATCCAACATTTGGCTTCCTGATGCCTGATCATCATCTTCATCCATATTTTAGGTTTC TTGTTGATCATCAAGAACTTTTGAAAGCTAACATAGACGACGGTGACTCAACTGTGGACAAGAATAAAAGTAAGGGGCTT GATCAAACGGGTGGTGCACTGTCTTTGCTTGGATCTGTCTATGGATCTGGAGAGGATGAAGATGGTACAACTGAGAATAC TTGTGACTTTGAAAGAGACAAATGTGAGGGAGCTGCTGTTGATGCTGCTGGTACAAGTGCTTCCCCAGAAACAGAACAGG CTGAATCATCTTCAAATACTGCCAATAAGGATGGAAGCATATCTAAAAGTCCAGTGCCCTCTTTGAAAGAAAGAGTCCCT GTTATTAAGCGGAATCACTCTATCAGTACTGTTAAGACAGCGACTGCAGCTCGAGCAAAAACAGCTGATGACTTGGATTC AGCATCTAATGCTGCAAACAAGTCACAAACTTATGTGCCTAGTACTGCTAAGATTGAACTACCTGTTGTTGAACCTCCAT CTGACTTGAAAAGAGTTATTGAGAGGATAGTTGAGTTCGTCTTAAAAAATGGCAAACAAGTTGAGGCTGTTCTTGCTGAA CAAGATCGTGCTCATGGAAGGTTCCCATTTCTTCTGCCATCTAATCGATATCATACTTACTATCTAAAAGCTCTTCAAAA TGCTGACGAGGGTAAGTTACCAGGCAAGGACCACCAGAAACACAATTCATCAGGTCGTGCAGGGGACAATACTGCTGTAC ATGAAGAAAGTGATGATCTCTCATGTGGATCTATGGGTTCTGATCTACCAAATGATATAGACAGAAAAGAGAAATTCAAG ATGATTATTGGCAAGTCAAAAAAGGATGGTCAAGATCCAACTCCCAAAGACTGCCATTCTCAAAACACAGTTGGCATGGA TGCAGCATCAGCAGCTGCTATTCTTCAGGCTGCGACTAGGGGTATTAAAAACCCTAATTTAGATATTTTTACCAAGACAT CAAGTAGTAGTGTTCATGGCCTTGGAGGTGATGGTGGGTATTTGTCCACTTTTCATCAAAATCTGGATGCTCCTATCCCT GTTACCAAGGCTATTGCAGAAACAGTAGCTATTGCCGCAGCTAGGGAAGCAGACTCCTCTGAAGCACATATGACTAAAGA GCAGAAACTTAAGGCAGAGAGATTGAAACGAGCAAAGATGTTTGCAGCCATGCTAAAAAGTGGAGTTGGAGCATTGAAAA ATGACCTGCCACGAGCTTTATCCGTTGAGCCACCTGGCTCTGGTCTTTCAGGTTCAGATGCTGAGACTGGGAATCCTGTG GTTAAAGAAAGGGAAGGAAGCTCCGTTCCATTTGATGTGGATAATTCAGATATAAGTAAGTCTGAGGAGAAGCATTCTAT TGATGATTCAGATAAAAGTCAGAAATCTGAGGAGAAACATGCTGTTGATGATATTGAAAGGCGATCAAAAAGAAAGTACC GTTCCAGATCTAGTAGACATGAAGAGGAGGAAGAAGAGGAGGAGGAGGAGGAAGAAGAAAAGAGAGAAGATGTAAGGGAT CATAAAAGATCCAGAAAAAAGCATCGATCTCATCGATCTTCACACACCAGTCGGGACAGGGATAGGGACGGACGCAAGCA CAAGAGAAGACATTCCTCCTCGAAAGACAAGTATTCTTACAGGGGAGCTAAACATGGCATCTCTGATGATGAGCATCAAC ACTCAAGTCATCATCATAAATACGATAGCTCCTCCGATGAAAAGCACCGATCTTCAAGACGACGACAAAGAGAAGACAGC ATGTCAGACCATGAGCATAAACATTCACGACGGCATAAACATGAGACCTCATCTGAGGATGAGCGTAGACACCGAAGCAG ACATACAAAGCATAAGAGCAGATCTCATGTTGAAAGAGAATCAGAGTTGGAGGAGGGGGAGGTAATGAAATCAGATAAGT CTCAACAAGCAAGTGAGGTTGAACGTGCTAGCAGAGAGCCTTCTGCCAGTTTATCGAATGCAAACCATGGGCCAGAAATA AGTGATGTCTCTGATGAGCTTAGAGCCAAAATTCGAGCCATGTTGGCGGCTAACTTATAA
Protein sequence (LotjaGi1g1v0025900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVRVRVTISNSSSNWKQSESGETMDLELVGRHAMFFDDDAMAAFVNSPEALVDWNSLSIDRYDVRHLLSGPLPPRLKRRP PPPEPDLDYERYLDLPSSSPDHYQQQQPQDNDSGPVNSAGYRAVAFSYENSNVSMETKDSDTDAGFHPNFPVPENLLHNL PPSDKVHQIISRTATFVRKHGSQSEIILRVKQGDNPTFGFLMPDHHLHPYFRFLVDHQELLKANIDDGDSTVDKNKSKGL DQTGGALSLLGSVYGSGEDEDGTTENTCDFERDKCEGAAVDAAGTSASPETEQAESSSNTANKDGSISKSPVPSLKERVP VIKRNHSISTVKTATAARAKTADDLDSASNAANKSQTYVPSTAKIELPVVEPPSDLKRVIERIVEFVLKNGKQVEAVLAE QDRAHGRFPFLLPSNRYHTYYLKALQNADEGKLPGKDHQKHNSSGRAGDNTAVHEESDDLSCGSMGSDLPNDIDRKEKFK MIIGKSKKDGQDPTPKDCHSQNTVGMDAASAAAILQAATRGIKNPNLDIFTKTSSSSVHGLGGDGGYLSTFHQNLDAPIP VTKAIAETVAIAAAREADSSEAHMTKEQKLKAERLKRAKMFAAMLKSGVGALKNDLPRALSVEPPGSGLSGSDAETGNPV VKEREGSSVPFDVDNSDISKSEEKHSIDDSDKSQKSEEKHAVDDIERRSKRKYRSRSSRHEEEEEEEEEEEEEKREDVRD HKRSRKKHRSHRSSHTSRDRDRDGRKHKRRHSSSKDKYSYRGAKHGISDDEHQHSSHHHKYDSSSDEKHRSSRRRQREDS MSDHEHKHSRRHKHETSSEDERRHRSRHTKHKSRSHVERESELEEGEVMKSDKSQQASEVERASREPSASLSNANHGPEI SDVSDELRAKIRAMLAANL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 24 | 780 | 757 | 3.0E-229 | ||
| PANTHER | 24 | 780 | 757 | 3.0E-229 | – | |
| SMART | 24 | 132 | 109 | 3.2E-23 | ||
| Pfam | 25 | 130 | 106 | 1.2E-16 | ||
| MobiDBLite | 69 | 118 | 50 | - | – | |
| MobiDBLite | 98 | 116 | 19 | - | – | |
| SUPERFAMILY | 151 | 216 | 66 | 8.9E-18 | ||
| Gene3D | 162 | 218 | 57 | 8.4E-20 | ||
| SMART | 167 | 220 | 54 | 2.4E-16 | ||
| Pfam | 168 | 216 | 49 | 2.0E-12 | ||
| ProSiteProfiles | 169 | 211 | 43 | 14.9 | ||
| MobiDBLite | 280 | 317 | 38 | - | – | |
| MobiDBLite | 286 | 309 | 24 | - | – | |
| SUPERFAMILY | 357 | 425 | 69 | 5.89E-14 | ||
| Gene3D | 372 | 429 | 58 | 9.0E-14 | ||
| SMART | 377 | 430 | 54 | 8.5E-10 | ||
| Pfam | 378 | 425 | 48 | 2.8E-9 | ||
| ProSiteProfiles | 379 | 421 | 43 | 14.441 | ||
| MobiDBLite | 430 | 472 | 43 | - | – | |
| MobiDBLite | 430 | 444 | 15 | - | – | |
| MobiDBLite | 622 | 882 | 261 | - | – | |
| MobiDBLite | 656 | 701 | 46 | - | – | |
| Coils | 690 | 724 | 35 | - | – | |
| MobiDBLite | 721 | 735 | 15 | - | – | |
| PANTHER | 736 | 898 | 163 | 3.0E-229 | – | |
| PANTHER | 736 | 898 | 163 | 3.0E-229 | ||
| MobiDBLite | 756 | 824 | 69 | - | – | |
| MobiDBLite | 835 | 860 | 26 | - | – | |
| MobiDBLite | 861 | 879 | 19 | - | – | |
| Coils | 884 | 899 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of LotjaGi1g1v0025900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…