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LotjaGi1g1v0031700.1

Overview

Field Value
Gene ID LotjaGi1g1v0031700
Transcript ID LotjaGi1g1v0031700.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description RNA helicase; TAIR: AT5G54910.1 DEA(D/H)-box RNA helicase family protein; Swiss-Prot: sp|Q9FFT9|RH32_ARATH DEAD-box ATP-dependent RNA helicase 32; TrEMBL-Plants: tr|I1JJ86|I1JJ86_SOYBN RNA helicase; Found in the gene: LotjaGi1g1v0031700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:4061731..4068781) extracted from Lotus japonicus Gifu genome v1.2.

AAGACTTCAAAAGAATCAGTAATCGATTATGGGCCGGGCCCAACAAAATCAGGCCCAGTTTCAAAACACACCGTAGCTTG AGGCTTGAGCCTTTTGTCCATCTCCTCGGTCGAAACCAGACCCCTCAAACCTAAAACGACGACGTTGAATCTTCGTCTTC AACCTTCACCTTCCTCTTCACCTCTGCAACTCTCTCTCTCTTTCTCACTCTCACATACTCTTTCCAGCTCCAACGTTCTA CAACAATGAGAAGACCAAAATCCAAGGAGTTTCGGAAGCAACAACGTCTCTCAGAAGAGGAAGAGATAAAGCTCTTGGAT TCATGGATCCAATCCCAGAAACCAAACTCTGGTTCCAACCCAATGTCACTGCCTCCACTCCCCAAAGACGCCCCCGTTGG CCGTATCGACGACACCACGTTCTCGCGCTACGCCGGCGTCAACCGCTTCAGCCACTTGCCTCTGTCCAAGAAAACCATTG ACGGCTTGCGTGATGCTAAGTTCGTTGCCATGACTGATATACAGAGAGCTTCTCTTCCCCACGCGCTTTGCGGCCGTGAT GTGCTTGGCGCCGCCAAAACTGGCTCCGGCAAAACGCTTGCTTTCATCATTCCGGTGAGTGCTTCAATTGATTTAGGATT AGGGTTTCTTTGCTTTTTGATAGATAGCTTGTATGGTGAAATTATCCTATGAAAAATAGTAAATGATGTTTTTTCAGTGA CTGTTACTTGAATTTTATTCTAATTCTAACAGAAGTTATCCTTAGCTAACTGAATTTTATGTTTCATTTCATTTTTAGTT AGTTGACTAACTGAGAGTTAGTTTTGGATTAAGGACTAACTGAATAGGTTAGTTTGTTAGCTGATGCAATGTACAAAGGA TAATGATTAATAGCCCGAAAGGCTATTCAACGAAACAGAGAAGTGCATCAATGTTGTTGATCTTTAATGATTCAGTCCGA CTTTGATTTTTTAAATTAGTGATTTCATCTGCTAATTCTGCTTTTGTTCTAACAGAAGTTACCCTTAGCTTACTGAATTT TTTGTTTCATTTTCATTTTTAGTTAGTTAACTAACTAAATAGGTTAGTTTGTTAGCTGATGTAATGTACAAAGGACAATG ATTGGTAGCCCGAAAGGCTATTCGACGAAACAGACGAATGCATCAATGTTGTTGATCTTTAATGATTCAGTCCTATTTTG GTTTTGTAATTAGTGACTTCATCTGCTTTTGGATAATTATACATGTTTGTCTGATTCGTTTCGGTACTATATAGCAATCC TCATGTACAAAACTAACAGGATAGATAAAATCCAGAAGGAAGGATTCATTTCTTGGTGATTCAGATTCATTCCCCAAAAT TTTCTGTCTTTCATATTGTTCTTATGCATTTTTCCCAGTGACCAAATTACTTAGCATGATGACTAAATTAATTGACAAAT ACACATTTAGGAACTTCAATCAAATTTTTAATGATTCTGGGATTAATATGGCTGATCTTTTATCCTTCATGGACTAATTT GATTATCCTCTGTTATCTTATTCTTGCTTAATTATTTTTATATTTTGTTTTACTGGTTTTTTGGGGGTTTGTTTGATGGT GGGTTATGAATGAAGGTGTTGGAGAAGCTACATAGAGAGAGATGGGGACCTGAGGATGGAGTTGGCAGCATTATCATATC CCCTACGAGAGAATTAGCTGGTCAGTTATTTGATGTGTTGAAGGCTGTTGGGAAGTACCATGGTTTTAGTGCTGGCCTCC TCATTGGCGGTCGCAAGGATGTTAACATGGAGAAAGAGCGTGTCAATGAGCTCAACATCTTGATCTGCACACCTGGTCGC CTTCTACAGCACATGGATGAAACTCCCAACTTTGATTGTTCGCAGATGCAGGTTAATATCATCTTTCGTTTTTACTTTTT CTATTCTGTTTTTTTTCTTTTTATGTGGAATAGATTACCCTCAATCCTACTCTGAAATGAGAGATATAATTTCATTTTAT TAGCTCAAGCTCTTCTTCCTTGTGTTTTTCGTTATAATTCGGTATCTGCAATCTGCCTGCCAGAGTAACCTTCACAAATT TTTGGTTCCATTTTAGAGGTTTCGTTTGTGTGGAAACAAAATCTATATGTTGATTTTTTACATGGTTTTAGCCTTTGTAA GACGTAAAATATCAATTTAAAGCCGTTAGGGATGAAAATATTAAAGGGAAAGAATGGTTGGTGTGTACGAGGAAAAATAA AATTATCTTATTTTAAGAGGGGATATTTTTCATTTTAGAAATGTTTAAGGGGGGTTAGGTCGTTAGGAGTATATTAATAT ATTAATTAGAGTAATAGCTAAAGCGTGATGCACAAGAGAGACACCTTTATGGGAATGGTTCCCCTGAGTTACCCTCCATG CCTTCTCTTGTTCATTTTAGTTTTTTCATGGATTGACATATTAATATGCTGCTGTTGTGTATGGTTGGTGGGCAATACAA GGTTGTTAGAGCTGTATTCTTTATCCCCTGGTGTGCTACTGCATGTTCACTGGATTGTAATTTTCCAGTCTTTGGAAGCA CTCCACTCTTGAATCTTGATGTGCCCGGGCTGTTTTTGATTCTTCTATGGTTCGAGAGCCTTACTGTGCCCTGCTACTTG TTGCTGCCACCGAAACTGCTAGTTTTTGTTTTTCCTGGTGCTGTTTCACTACTGTAATTGTTAGGCTTTATGTTTTTGCT GTTCTTTTCCTTGCTTCTTTGTTACTGTCTTTCCTTTCTTTATGTTGCTGAGTTTTATTAGTTCAGTTGGGGGAACTTTT TCCGCATGAGTTTATTCATTAATATATGATTTCACCTTTCAAAAAATAAATATAATCCTGTATTTTAGGAGAGTGGATAT AATTTTTTCACAGAGTGTATTAGGGGGTTAGGACAGATCCTCTGTCCCACATAGAACCAGGTCAAGAACATATGCGTTAA AGAAACAAATAGATATAAATACTCTCAGTTAAAGCTACCCTTCCATTTTCAATAATTAAACGAAATCAATTAAAATACAG TTGTAGGATAAAAACAATGTAGCAAACCTGCAAAGATCTTTTTGCTGCCTGAGAAACTTTATAAACTGGATCAAATTGCG CACGCTTGACCATGGATAGTTATCATTACATTTTTTGTAGATATAGCTGATCATTAAATGAACTTTTTGGATACAGGTTT TAGTACTAGATGAGGCTGATCGTATTCTCGACAGTGGATTCAAGAAGGATCTAAATGCAATAATCTCACAGCTGCCAAAA CGTAGACAAACCTTTCTTTTCTCAGCCACTCAAACAAAGTCGATTCAAGATCTTGCAAGACTAAGTTTGAAAGACCCAGA GTATCTGAGTGTGCACGAAGAGTCTGTGACTGCCACTCCTACTCTCTTGAAGCAAATTGTGATGATTGTTCCTCTGGATC AGAAGTTAGATATGCTGTGGAGTTTCATAAAGACACATCTTCAGTCAAAAACACTTGTCTTTCTTTCGAGCTGTAAACAG GTGAATCTACTTCTCTGCCCTTTCTTTCACATGAAGAGAATCATATGTTGTAGGCTTCTATTACACTGCCATGCCATATG ATACGCTATTCCTGTTGATGATTAGCCAATACATGACAAGCCATAATTTTCAATAGTTTTTATGAACTTGAGAGTTGTCT CATTAGTTTAGTATTTAATGCCCTATTAAATATTTGCTTTGCTGTATTTGTGACTTCAGGGTTTAGTCTGCTTGCATAAT TTTTGTTGTGCTGATTACAATTATTGTAATAAATAGGCTTTTAAAGGATTACTGGCTTGAATTGTTGGTATTTCTTATAT GCTAAGGGTTGATGATTTCCATTTAAAAGGTTTTCTGTTGATTTTATCTTGTGTGTTTTTGGTGCAAATTTCATTCCTTG TGCTTAACTATCTTCCATAACATTCGCATCCCTGCTTAATAGGTAAAATTTGTCTTTGAAGCATTTAAGAAACTGCACCC TGGCATACCGCTGAAGTGCCTTCATGGGAGGATGAAGCAGGAAAGAAGAATGGCAATATATTCTGAGTTCTGTGAGAAGC GCTCAGTTCTCTTCTCAACTGATGTGGCTGCGAGAGGCCTTGATTTTAATAAGGCGGTTGACTGGGTTGTTCAGGTAAGT AGTCTCTTGCTTTGTTTCTGGTCGTGGCCCAAGTGTTTGGGCCTTTGATGCTTTCCTTTTTTCTTTGGGGGAAGGGATGT GTAGGGTATTATTTATTGGTAAGAAATAGTTTGTTATTATGGTCAGAGTCTCACTTTTTTCTTAATATGTAGGTTGATTG TCCTGAGAATGTAGCATCTTACATACATAGAGTTGGCCGTACTGCTCGTTATAAATCCGTTGGAAAGTCAGTTTTGTTTC TTTTGCCTTCAGAAGTTGAAATGCTTGAAAGATTAAAAGCAGCAAAGGTTCCAGTGCATCTTACCAAGGTACATTTGCTC TGCAAATCAATAGTATGCATGTAATTCCAATTTGTGTTTGAACATCAAGGTGCCAGTTTTGAAGATGTCACTTTCTTTTA TGGTTCATTCTTAATATTATGTTTTTTCTGACATATTTTCTCACTATGGTTTTTCAATTGCTGATTGTTTAGCCAAGGAA AGAACTACTGCAACCAGTTTCTGGTTTGTTGGCATCTTTACTGATCAAGTATCCTGACCTGCAACCTCGGGCTCAAAGGG CATTTGTCACATATTTGAGATCCATCCATATCCAAAAGGATAAAGAGATCTTTGATGTTTTGAAACTACCTATTGACGAG TATTCAGCATCATTAGGCTTGCCAATGACTCCCAAAGTCCGATTTCTAAACCAGAAAATTAAGTCTAAAGCGGTGTCAAC AACATCGGTTTTAGCTGAACCAGAAGATTCAAATAAGGAAAATGACTTTGTGGTTTCAACAAATAAGCTAGACACAATTG CTTTGAAGGATGAGGAAACTGATGATGATCTTCTTCGGGCAGCTGATACCTCAAATGAAGGCGATGTGAAGTCATCTGAA ATTACAGAAATAATGTATGCTCCCTTATACATGTTCCCAGTAGCACAAAAATATATGTTGATTTTACTTTCTGATAATGC TACTTTAATTGCTTTATATCACATAGGGAGTAGACTAGTCTTTCTGGTTTCAAAATTACCAAGACAGATGGACATTTCAC ATAAAATTTAATGATGGCTTGTGAAATTCATAATCAGAGTAGTCTCGAGTTTCTTCCTCCTTTCTTTTTCTTACCTATTT GATTCTATCCTATGCAGGCCAGCAACTCGTCTATTGAAGAAAAAGAAGCTCAAGATTAATGTTCACAGACCATTGGGCAC TCGGGTTGTATTTGATGATGAAGGCAACACACTTCCTCCGCTAGCCAGGATTGCTGACACACATGGTGGCAAGGAATCAT TGCTTCTTGACCCAGGTATGCCTACTCGAAGCTAGGATAATATTTACAATTTTGCATGGGGAAATCTTTGCTTGTATATG TGTAAAGCTGTGAATTGGATTTGCTAGAATCTTGTCCTACACGTGTATCAAATTTTCTGTTTTGTCAGTTGACTGTAAAC TATAATCTTTAGCTATGGTCTTTGTTTGGGAAGTTAAATTGGACGTGTGATTCTGATTTTGACAAATAGGCCTAGTTTAT CAAGTTGGAATGAGAACCTTCTCTCTTTTCGATAATGCTAAACGTGCATCTTTGTGTCAAATGCCAATTCTTTCCTTATT TTTTATTTCATTAAACTAAAATGGAGACAAACGCCCAAAGGTTAATGCTGTCATCATCATATATATAGGTGCAGCACAAC AAATCTTGAGAATAATGAAAATAGAGAATAACAAGGAAATTCGCTTTTCTTTAGTACTCAGTGAGACAGCCATTAGTTTC ATAGTTCCTACTCTGTCTGAGGCATAGTAAAATGTCTGTTTTAGTTTGACATCCCTGATTTCCTTGGTATTTTCTAACAC TTCATATGTAATCATTGTTGATTTCATGAATCTAAACATTGCGATAGACTTCATCCTGTTCAATAATCTGTGACTGAGTG AACATTGAAGTTGTTGTCTTGTTGAGTTGTATTGTCTATTTTGTCATCTCAATATCTCATGTTCATGCAGAACAAAAAGC TGAATACTATAAAAGGATGCGAGCGGATTTAAAGAAGGCAGACAAGGAAGACAAACTTGTAGAGCGAAAACGGCTAAGAG AGAAAAGAATGAAGCAGAAGATGAAGCTTAAAGCAGGGAATGCGGAAGAAGAGGACAGCGAAGTTGATAATTCTGGGTCA GAAGGAGATGAAGCAGTAGATAGACGGCATAAAAAGAGCAAGATATACTTTGATAGTGATAGTGATGGGGGTGAAAGAAA TGAAGTCACAGGGCGTGGTGCAAATATTAGTGCTGACTCCATTACTTTGGAGGAGCAAGAAGCGCTGGCTTTGAAGTTGT TAAATTCCATGCATTCATAGGACATGCATGCTTCAGCTATATATCACGTTTTATGACGGCAAAACATGTGATAAATAGAG TTGTTTTCTGAACATTTTTTGTCACGGATGTTTTAAACTTATTAAGAGAAATTTTGTAAACTATGAATTTTGCGGCTATT TGATCTCAAATTTAATCTGCCAGAACAAACTAGAGATTTTATGGGATACCATATATGATATCATCTTTCTGTGAAACGAA AGACCAACTGTGTGAAACATGAGATTAGTATTATTGAGATTTTGAGGCACGTTTAGTCTTATTCTTATTTTTAATGAAAA TGACGCCTTAACACTACTGTGGCTAGAAAGGAACTAATGTTAACAAGTATAGCGATAATCATATAGATGATAATGAAAAG GTTTAAATATGCTAGAGGTCCCTGGAATTGTACTCCGTACGAAAATAAGTCCCTGAGAAAAAAAATTCTGATTCCTGGTC CCTAGAAATGTATTTTTAATTAGAATAGGTCCCTACGCGTGTTTAAAGCTTAGGTGACTCTATTTTTGCATAGTTGTTAT TTCTTCGTGGC 

CDS sequence (LotjaGi1g1v0031700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGAAGACCAAAATCCAAGGAGTTTCGGAAGCAACAACGTCTCTCAGAAGAGGAAGAGATAAAGCTCTTGGATTCATG GATCCAATCCCAGAAACCAAACTCTGGTTCCAACCCAATGTCACTGCCTCCACTCCCCAAAGACGCCCCCGTTGGCCGTA TCGACGACACCACGTTCTCGCGCTACGCCGGCGTCAACCGCTTCAGCCACTTGCCTCTGTCCAAGAAAACCATTGACGGC TTGCGTGATGCTAAGTTCGTTGCCATGACTGATATACAGAGAGCTTCTCTTCCCCACGCGCTTTGCGGCCGTGATGTGCT TGGCGCCGCCAAAACTGGCTCCGGCAAAACGCTTGCTTTCATCATTCCGGTGTTGGAGAAGCTACATAGAGAGAGATGGG GACCTGAGGATGGAGTTGGCAGCATTATCATATCCCCTACGAGAGAATTAGCTGGTCAGTTATTTGATGTGTTGAAGGCT GTTGGGAAGTACCATGGTTTTAGTGCTGGCCTCCTCATTGGCGGTCGCAAGGATGTTAACATGGAGAAAGAGCGTGTCAA TGAGCTCAACATCTTGATCTGCACACCTGGTCGCCTTCTACAGCACATGGATGAAACTCCCAACTTTGATTGTTCGCAGA TGCAGGTTTTAGTACTAGATGAGGCTGATCGTATTCTCGACAGTGGATTCAAGAAGGATCTAAATGCAATAATCTCACAG CTGCCAAAACGTAGACAAACCTTTCTTTTCTCAGCCACTCAAACAAAGTCGATTCAAGATCTTGCAAGACTAAGTTTGAA AGACCCAGAGTATCTGAGTGTGCACGAAGAGTCTGTGACTGCCACTCCTACTCTCTTGAAGCAAATTGTGATGATTGTTC CTCTGGATCAGAAGTTAGATATGCTGTGGAGTTTCATAAAGACACATCTTCAGTCAAAAACACTTGTCTTTCTTTCGAGC TGTAAACAGGTAAAATTTGTCTTTGAAGCATTTAAGAAACTGCACCCTGGCATACCGCTGAAGTGCCTTCATGGGAGGAT GAAGCAGGAAAGAAGAATGGCAATATATTCTGAGTTCTGTGAGAAGCGCTCAGTTCTCTTCTCAACTGATGTGGCTGCGA GAGGCCTTGATTTTAATAAGGCGGTTGACTGGGTTGTTCAGGTTGATTGTCCTGAGAATGTAGCATCTTACATACATAGA GTTGGCCGTACTGCTCGTTATAAATCCGTTGGAAAGTCAGTTTTGTTTCTTTTGCCTTCAGAAGTTGAAATGCTTGAAAG ATTAAAAGCAGCAAAGGTTCCAGTGCATCTTACCAAGCCAAGGAAAGAACTACTGCAACCAGTTTCTGGTTTGTTGGCAT CTTTACTGATCAAGTATCCTGACCTGCAACCTCGGGCTCAAAGGGCATTTGTCACATATTTGAGATCCATCCATATCCAA AAGGATAAAGAGATCTTTGATGTTTTGAAACTACCTATTGACGAGTATTCAGCATCATTAGGCTTGCCAATGACTCCCAA AGTCCGATTTCTAAACCAGAAAATTAAGTCTAAAGCGGTGTCAACAACATCGGTTTTAGCTGAACCAGAAGATTCAAATA AGGAAAATGACTTTGTGGTTTCAACAAATAAGCTAGACACAATTGCTTTGAAGGATGAGGAAACTGATGATGATCTTCTT CGGGCAGCTGATACCTCAAATGAAGGCGATGTGAAGTCATCTGAAATTACAGAAATAATGCCAGCAACTCGTCTATTGAA GAAAAAGAAGCTCAAGATTAATGTTCACAGACCATTGGGCACTCGGGTTGTATTTGATGATGAAGGCAACACACTTCCTC CGCTAGCCAGGATTGCTGACACACATGGTGGCAAGGAATCATTGCTTCTTGACCCAGAACAAAAAGCTGAATACTATAAA AGGATGCGAGCGGATTTAAAGAAGGCAGACAAGGAAGACAAACTTGTAGAGCGAAAACGGCTAAGAGAGAAAAGAATGAA GCAGAAGATGAAGCTTAAAGCAGGGAATGCGGAAGAAGAGGACAGCGAAGTTGATAATTCTGGGTCAGAAGGAGATGAAG CAGTAGATAGACGGCATAAAAAGAGCAAGATATACTTTGATAGTGATAGTGATGGGGGTGAAAGAAATGAAGTCACAGGG CGTGGTGCAAATATTAGTGCTGACTCCATTACTTTGGAGGAGCAAGAAGCGCTGGCTTTGAAGTTGTTAAATTCCATGCA TTCATAG 

Protein sequence (LotjaGi1g1v0031700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRRPKSKEFRKQQRLSEEEEIKLLDSWIQSQKPNSGSNPMSLPPLPKDAPVGRIDDTTFSRYAGVNRFSHLPLSKKTIDG LRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVLEKLHRERWGPEDGVGSIIISPTRELAGQLFDVLKA VGKYHGFSAGLLIGGRKDVNMEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKDLNAIISQ LPKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPLDQKLDMLWSFIKTHLQSKTLVFLSS CKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHR VGRTARYKSVGKSVLFLLPSEVEMLERLKAAKVPVHLTKPRKELLQPVSGLLASLLIKYPDLQPRAQRAFVTYLRSIHIQ KDKEIFDVLKLPIDEYSASLGLPMTPKVRFLNQKIKSKAVSTTSVLAEPEDSNKENDFVVSTNKLDTIALKDEETDDDLL RAADTSNEGDVKSSEITEIMPATRLLKKKKLKINVHRPLGTRVVFDDEGNTLPPLARIADTHGGKESLLLDPEQKAEYYK RMRADLKKADKEDKLVERKRLREKRMKQKMKLKAGNAEEEDSEVDNSGSEGDEAVDRRHKKSKIYFDSDSDGGERNEVTG RGANISADSITLEEQEALALKLLNSMHS 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 27 49 23 -
Gene3D 54 278 225 2.4E-73
PANTHER 61 510 450 5.8E-150
PANTHER 61 510 450 5.8E-150
ProSiteProfiles 66 94 29 9.194
CDD 77 275 199 1.03159E-132
SMART 85 289 205 9.9E-53
Pfam 90 260 171 1.9E-44
ProSiteProfiles 97 272 176 30.509
SUPERFAMILY 138 428 291 2.41E-60
ProSitePatterns 218 226 9 -
Gene3D 283 531 249 3.1E-46
CDD 286 417 132 4.99589E-42
ProSiteProfiles 294 446 153 17.639
Pfam 298 407 110 3.6E-23
SMART 325 408 84 6.0E-23
SMART 447 510 64 8.7E-19
Pfam 452 508 57 4.3E-13
MobiDBLite 657 725 69 -
MobiDBLite 690 716 27 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0031700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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