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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0050900 |
| Transcript ID | LotjaGi1g1v0050900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vesicle-associated membrane protein; TAIR: AT4G32150.1 vesicle-associated membrane protein 711; Swiss-Prot: sp|O49377|VA711_ARATH Vesicle-associated membrane protein 711; TrEMBL-Plants: tr|I3S1N5|I3S1N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0050900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:7251399..7252404) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTATTCTGTACGCGCTGGTAGCACGTGGATCGGTGGCACTAGCTGAATTCAGCGGAACCGCCACAAACGCCAGCAC AATCGCCAAGCAAATCCTCGACAAAATTCCCGGAAACAACGATACCCACGTCTCTTACTCTCAAGATCGCTTCATCTTCC ACCTCAAACGCACCGATGGCCTCACCGTTCTCTGCATGGCCGACGATAACGCCGGCAGTCAGTATCAAAATCACTTTTTC CCTTTTTTCCCCTTCCAAACGAAACCCTAATTGACGATTAATTGATTTTGCAGGGAGAATCCCGTTTGCGTTTCTCGAGG AAATTCACCAGAGATTCGTCAGGACTTACGGTCGCGCGGTTTTCTCTGCTCAGCCTTATGGGATGAACGATGAATTTTCT AGGGTTTTGAGTCAGCAGATGGAGTATTTCTCTAGTGATCCTAATGCTGATAGGATCAATCGTCTCAAAGGTGAAATGTC TCAGGTATGCTGATTTCAATTTTTGATTTTTGATTTTTTTGATTTCTGTGATTTGGATTACTGGTCTGTGTTTGATTCAG TGACTCACTGGGGTTTTGGGTTTTTTTAGTATGGTGATTTCAATTTCAAATTTTGATTTTGGTTTCTTTGATTTGGGTTT GTTTGGTTTATAGGTGAAGAATGTGATGATAGAGAACATTGACAAGGTTTTGGAGAGAGGGGATAGGTTGGAATTGCTGG TGGATAAAACTGCTAATATGCAGGGAAATACTTTTCGATTCAGGAAGCAAGCTCGTCGGTTCAGAAGCACTGTTTGGTGG AGAAATGTCAAGCTCACGTGCGTTTGATCTCTCTATCTTAACTGCTATCTTATTATGTCTCTGGTTTTTGCCTGTTGTGG TAGTGAGTAACAGTGAATATAGTGATAAAGCTGCATTGTATTGAATGAAATTTGCATCTTCCGGCGTGATCAATAGGATT TTCGTATGTGCCAACTTCATTTGAAACATTGAGGTTAAAGATGTAA
CDS sequence (LotjaGi1g1v0050900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTATTCTGTACGCGCTGGTAGCACGTGGATCGGTGGCACTAGCTGAATTCAGCGGAACCGCCACAAACGCCAGCAC AATCGCCAAGCAAATCCTCGACAAAATTCCCGGAAACAACGATACCCACGTCTCTTACTCTCAAGATCGCTTCATCTTCC ACCTCAAACGCACCGATGGCCTCACCGTTCTCTGCATGGCCGACGATAACGCCGGCAGGAGAATCCCGTTTGCGTTTCTC GAGGAAATTCACCAGAGATTCGTCAGGACTTACGGTCGCGCGGTTTTCTCTGCTCAGCCTTATGGGATGAACGATGAATT TTCTAGGGTTTTGAGTCAGCAGATGGAGTATTTCTCTAGTGATCCTAATGCTGATAGGATCAATCGTCTCAAAGGTGAAA TGTCTCAGGTGAAGAATGTGATGATAGAGAACATTGACAAGGTTTTGGAGAGAGGGGATAGGTTGGAATTGCTGGTGGAT AAAACTGCTAATATGCAGGGAAATACTTTTCGATTCAGGAAGCAAGCTCGTCGGTTCAGAAGCACTGTTTGGTGGAGAAA TGTCAAGCTCACGATTTTCGTATGTGCCAACTTCATTTGA
Protein sequence (LotjaGi1g1v0050900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGILYALVARGSVALAEFSGTATNASTIAKQILDKIPGNNDTHVSYSQDRFIFHLKRTDGLTVLCMADDNAGRRIPFAFL EEIHQRFVRTYGRAVFSAQPYGMNDEFSRVLSQQMEYFSSDPNADRINRLKGEMSQVKNVMIENIDKVLERGDRLELLVD KTANMQGNTFRFRKQARRFRSTVWWRNVKLTIFVCANFI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 126 | 126 | 5.7E-43 | – | |
| PANTHER | 1 | 194 | 194 | 1.6E-119 | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 1 | 16 | 16 | - | – | |
| PANTHER | 1 | 194 | 194 | 1.6E-119 | – | |
| Phobius | 2 | 9 | 8 | - | – | |
| SUPERFAMILY | 3 | 118 | 116 | 1.79E-29 | ||
| CDD | 4 | 118 | 115 | 1.34125E-34 | – | |
| ProSiteProfiles | 7 | 111 | 105 | 30.394 | ||
| Phobius | 10 | 16 | 7 | - | – | |
| Phobius | 17 | 199 | 183 | - | – | |
| SMART | 28 | 110 | 83 | 6.6E-27 | ||
| Pfam | 29 | 108 | 80 | 9.2E-25 | ||
| SUPERFAMILY | 121 | 187 | 67 | 1.41E-21 | – | |
| Pfam | 124 | 196 | 73 | 1.6E-26 | ||
| CDD | 125 | 184 | 60 | 1.96329E-24 | – | |
| ProSiteProfiles | 126 | 186 | 61 | 18.462 | ||
| Gene3D | 127 | 188 | 62 | 4.9E-24 | – | |
| PRINTS | 131 | 150 | 20 | 2.4E-8 | ||
| ProSitePatterns | 144 | 163 | 20 | - | ||
| PRINTS | 151 | 170 | 20 | 2.4E-8 | ||
| PRINTS | 187 | 199 | 13 | 2.4E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi1g1v0050900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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