Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0065200 |
| Transcript ID | LotjaGi1g1v0065200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox protein; TAIR: AT1G62360.1 KNOX/ELK homeobox transcription factor; Swiss-Prot: sp|P46608|HSBH1_SOYBN Homeobox protein SBH1; TrEMBL-Plants: tr|K7KB19|K7KB19_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0065200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:9012585..9016691) extracted from Lotus japonicus Gifu genome v1.2.
ATGATAGGGTTTGGAGGTAACAGTTGCAGTGGTGTTTCTTCCTCTATGGACATGATGAACATGGAAACTAATAGGAAGTT CCTTTCTCTGCCTCTGAGCAACAACAGCAACAACAATTCTGGTCCCCAGATGAGAAGGGTACCTGTTGTCATGAGCAATG CTCAAGATCATAACTACAGCAGCCAGCAACAGCAGGACCACAACACTAGCAGTAGTGTGAGGGACAAGATCATGGCTCAT CCTCTCTTTCCTCGTCTCTTGTCCTCTTACCTTAATTGCCTCAAGGTGATATAAACTTTTACACATATCAGCTTTCCCTT TCTTCCCAAGAGATGTTGTCCATGTGATCCATGCACTCTTTTAACATGGAAGCTTAAACACTTACTAAATGATTGGTAGA CATTTGCATAGTGCAGTGCAGTGGAGACACCAAACAATCACTCAAGCACGAAAGAAATATAAAAGGGAAATAATAAATGT GATATAAGCTGGATGAGTGTGATAAGAAGAGAGACAAGGAGAAAAATAGAGTATCTGTGTGGTTGTTGGGTGTCTCTGCG CTGTTTGGTTGTCATGTCTGAGTATATACGATGGAAAAACCATGCTTATTTCTCTTTCATTGGTTTTTCCATGGGAATAG AAGCTTTTGAGTTAAGATCCTAGAAATGTGAATTTTTTTATGCTGTATAGATCTTGTTTACTTTCATGTTTTTTTTTTTT TTGCTTGTTTCAATGGTGAGACTTGGGTATTTACAGGTTGGAGCACCTCCTGAAGTGGTGGCTAGTTTAGAGGAATCATG TGCCAAATGTGAGTCCTTGAATGCATCTGGAAGGACAGGAGGTGGTTCCTTAGGTGAAGATCCAGCTCTGGATCAGTTCA TGGAGGCTTATTGTGAGATGCTCATCAAGTATGAGCATGAGCTCACAAAACCCTTCAAGGAAGCCATGCTTTTCTTTTCA AGGATTGAGTGTCAGCTCAAAGCTCTAGCAGTTTCAACAGAGTTTGGTGATTATTAATACACTTAAAACATTCATTACTT GTTCCTGAACTTCTCTGACTGTGGAGCAGTCATGGAAGGTTTTCTTGTTTGGGGAAGTGGGTGCGGGTGAGATACCAAGT GTGTCAGTGTGTGTGTGAGAACTTAGTAATTCATTGTGTGACCAATGGGAGAGAAAAATCAGTAACTACAAACTAGCTGC ATGACAGTCATGGATGGTTGTTTTACCACTGTCAAAAGACCTAGAATTTAACCCTTTTGTTGAAATCTTTTGGCTAGAGG CTACCTGCATGTTTAGAAACTCTTACATAATTGAAACTGAAGTCATAATATATATGTTTGGAAACTCGTTTAAAAATCAT GATTAAGCTGAAATCATGGTAGATAGAAACAACTTACCTCGGCTATTGCTCCACCATGATTTTACATTCTCTGTGGTTTT AAAATGAGTTTCCAAACATGCACTTAATTATTGGACGAAGGTTCTTGATTCTAGAATTGATTTTGAGAAAAGAGAAGTTG ATCCAAACACGGTATAAGTGTATGTTTGGAAACTCTTATGAACTAGCTTCTAGTTCTAAAATTGATTTTGAGTAAAGAGA AGGTCATCCAAACATGTTATAAATAAGCAAATGAGATCATGGTCAAGTTTATATATGTCTTTAGACTAGTAGTAGTTCTC CTGTGTCTCAATGTCTTTTATAACCCTTTTGGAAATTAACTGCAAACCTTGAAAGGGTCACTTTGTAGTTACTATTAATA GATCTTTAGTAGATAATGTCCTTCACAAGCTTAATATTGGTATTCAATATTAATTGGTAGAGTACACGACTGAGGGCCCA ATTAATATTATAAAAGATGATTGCACATTCATCTCCTGGACAAGTGTGATATATATCTTTGATGATAAAGATGATTTGAT TACAGTATATGTTTAGTTATATGAATATCTTCAGAATAAGTTCAGAGCCCACTCAGATGGCCCTTCTTATCTATAAAAGG TGTGATTAGAGTTTAAAGGATATTGATTGAAAAACTTAAACAGTAATTATTTGTAAGATTGTATAATAGATGGGCCCAAC GTGTTTGAACTAGGTCAAAAAGTTTGATAATGATATTATAGTGCTTGATGGGAATTCAAGAAAGTGAGATTTTTGCAATA TCATTTGAATGATGAAAAGTTTATTCGAGCCTAATGCATCCTAATTTACTGACCATCAATAATCTAATGGCTTTCCAGAT ATTTTGAATGGATTCTTATTTTTATTTTCATGTGGCCTTGGTTCTGCTTGCACCATTGTTTCACACATATCCATGTGTTG TCATCACTTGCAAGGCAATAGTCCTTCTTTCTTCTGTACATATAATTTCTTCACCTTTTTAGGTGCATGGCTCTTTGTCA CTGTTTCAAGAACTTGGTAGCAAAAGGAAACTGCTTGTCTTGTTTTCTTTTGTCAATTTTAATTTCCCTGCCAGTTTGTT CCCTCTCAAACCTCTTTTTATAGGTTTTCTACTGGGTGAGGAAGGGGTCACATATTAAGTACATGTATTAGCTAATTCAT TTGGTAACTGTATTTTCAAATTAAAAAGTACTTTTGTCATGATAGTTGATGATGATATATGAAATTTTCTACATGGCTAG ATACATTTGGTATCAAACCATGTATTTACTCATTTGGTATTTCGGAAAAAAAATTCACCATTGATTCTTTTTATAATTGA TTCTGAAGCTAAAATTGGTGCATGTTTGGAAACGGTAACGTCAAAATCATGCTTGACAGAAGTAAAACATGCTTTTGTCT TCAGCATGGTTTTAAAACTAATATGCAAACATGTACTTAATGAGTTTCATGTTGTTCTAGTTACTAGTGATGTGTTAAAT GTTAAGTAATCTTGGCTGCATATGTGATATTGTAAATCATGCTACTTTAGCTTGTGTGCATAAATTACTTTTATTGATAG TTTCATGTTGTTGTGGTGATTTGAAGGTCAAAGTGAATCATCTTCTCAGAATGAGGTTGATGTGCATGAAAACAACCTAG ACACACAAGCTGATGATAGGGAACTAAAAGTTCAACTTCTGCGCAAGTATAGCGGTTACCTCGGCAGCCTCAAGAAGGAG TTTCTGAAGAAGAAAAAGAATGGAAAGTTGCCAAAGGAAGCTAGGCAGCAGCTACTAGATTGGTGGAACAGGCATTACAA ATGGCCTTACCCATCGGTAACTAAGTTTTATTACATCCATCATAAATCATATGCATATAATGTATGCTATATTGACAGTG CACACACAATCCAAAGCATAATAACTTCATTAGTTACGCTTTATAAAACATGTTTGGATCAGATTTTCTTTCATCAATAT CAACTTTGAAACCAGAAGCTACTTATTGGAGCTTCAAACCGGAATTGATTCTTTAATTTACAATAGTGATTGTGAGGCTC CCAACTTTAGAACCAACCAAAAGTTCATATATACCATGTTTCTGCAATTTATCATAGTATATATCTTTGACATGTTATAA TGTCCATATTTAATTTGCGGCCAAGACTATGATCGACCATGTTAAAATATGTTCGGTCCACCCATGAGCCATGTTTTTAC TACTAACATTCATCACTACATATTATTTCCAAGATGCTCCTTATATGCTACAATTAATTTGCACGGAAGTTCTGTCAACT TGTAAACTAGATTTTTCTTAAACCACGGTAGACCAAACATTTTCCAAACTATAGACATTTGAGCATGGTTCTAATTAGAA AATGCATTCACTTATAATTCTATAATTGATGGTATTGTAGAATAATCCTGGTCATCTGAATAATGGAACTTTAATTTAAT TTCATATGTTGGTTTTAGATGCTAATATTTTCTCATGTTAACTTGGGATTGGGGTGAACATGTTTGTAGGAATCTCAAAA GCAAGCACTTGCAGAATCCACTGGATTGGATCTGAAGCAGATAAACAACTGGTTCATCAATCAGAGAAAACGTCATTGGA AGCCTTCTGAGGATATGCAATTTGCTGTGATGGATGCAACTAACTACTATATGGAAAATGTTATGTGCAAGCCATTTCCT ATGGATGCCATGCCAATGCTTCTTTAA
CDS sequence (LotjaGi1g1v0065200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATAGGGTTTGGAGGTAACAGTTGCAGTGGTGTTTCTTCCTCTATGGACATGATGAACATGGAAACTAATAGGAAGTT CCTTTCTCTGCCTCTGAGCAACAACAGCAACAACAATTCTGGTCCCCAGATGAGAAGGGTACCTGTTGTCATGAGCAATG CTCAAGATCATAACTACAGCAGCCAGCAACAGCAGGACCACAACACTAGCAGTAGTGTGAGGGACAAGATCATGGCTCAT CCTCTCTTTCCTCGTCTCTTGTCCTCTTACCTTAATTGCCTCAAGGTTGGAGCACCTCCTGAAGTGGTGGCTAGTTTAGA GGAATCATGTGCCAAATGTGAGTCCTTGAATGCATCTGGAAGGACAGGAGGTGGTTCCTTAGGTGAAGATCCAGCTCTGG ATCAGTTCATGGAGGCTTATTGTGAGATGCTCATCAAGTATGAGCATGAGCTCACAAAACCCTTCAAGGAAGCCATGCTT TTCTTTTCAAGGATTGAGTGTCAGCTCAAAGCTCTAGCAGTTTCAACAGAGTTTGGTCAAGAATCTCAAAAGCAAGCACT TGCAGAATCCACTGGATTGGATCTGAAGCAGATAAACAACTGGTTCATCAATCAGAGAAAACGTCATTGGAAGCCTTCTG AGGATATGCAATTTGCTGTGATGGATGCAACTAACTACTATATGGAAAATGTTATGTGCAAGCCATTTCCTATGGATGCC ATGCCAATGCTTCTTTAA
Protein sequence (LotjaGi1g1v0065200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIGFGGNSCSGVSSSMDMMNMETNRKFLSLPLSNNSNNNSGPQMRRVPVVMSNAQDHNYSSQQQQDHNTSSSVRDKIMAH PLFPRLLSSYLNCLKVGAPPEVVASLEESCAKCESLNASGRTGGGSLGEDPALDQFMEAYCEMLIKYEHELTKPFKEAML FFSRIECQLKALAVSTEFGQESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNYYMENVMCKPFPMDA MPMLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 177 | 165 | 1.5E-99 | – | |
| PANTHER | 13 | 177 | 165 | 1.5E-99 | – | |
| SMART | 71 | 115 | 45 | 8.6E-15 | ||
| Pfam | 73 | 113 | 41 | 2.9E-19 | ||
| SMART | 123 | 174 | 52 | 1.1E-24 | ||
| Pfam | 127 | 172 | 46 | 3.5E-21 | ||
| Gene3D | 152 | 221 | 70 | 1.5E-12 | – | |
| SMART | 162 | 216 | 55 | 0.0054 | ||
| PANTHER | 180 | 245 | 66 | 1.5E-99 | – | |
| PANTHER | 180 | 245 | 66 | 1.5E-99 | – | |
| CDD | 181 | 213 | 33 | 1.80442E-8 | ||
| ProSiteProfiles | 181 | 212 | 32 | 9.539 | ||
| Pfam | 181 | 208 | 28 | 1.0E-9 | ||
| SUPERFAMILY | 181 | 223 | 43 | 7.27E-10 | ||
| ProSitePatterns | 187 | 210 | 24 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi1g1v0065200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…