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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0095600 |
| Transcript ID | LotjaGi1g1v0095600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT1G09680.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680; TrEMBL-Plants: tr|I1JHV1|I1JHV1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0095600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:14483047..14486671) extracted from Lotus japonicus Gifu genome v1.2.
CTTCTTCTTATTTTGACACTTTCTATGTCCTTGGTTGGTTCAGAAAAACACTCTGCACTGAAACAGCAAAACCACACAGC AAATAGACATGGCCATGGCTACAAAACTCCACCATTTTCACCCTTCCCTTTCTTTCTTCCTCTCTTGTCACTCTCACCTT CTCCGTTCTGCTTCTACCAACATGATCATCTTCTACTCCTCCTGGTACAATCCACCTCCTCCCTCCAAACACCATGAAAT CCTCTGCACAATCTCAGAAGCCATCAACACAGTCCACACTTCCGAAATCTACAACAAGCCACCTCTTGATTACTCCCACA ACCCCAGAATCAAACGCATTCTACCTTCCATTACACCCTTTCTGGTAACGAAACTCATCAACATCAACCCTCTTTCTCTC CCACCTTCCTCCATTTTCTCCTTCTTCAACTGGCTCGCTACTCGCCCTCCCTTCCGCCACACTCTCCGATCCTACTGCGC CATGGCGCATTTCCTCTGCGACCATAGAATGCTCCCGGAAGCACACTCCCTCCTCTGTTTCCTCGTTTCGCGAAAGGGAC ACGGTTCTGCTTCTTCGCTCTTTGCTTCGTTCCTCCAAACAATGCCGACCCAACAATCTGTTCTCGTCTTTGATGTGTTA ATCTCTGCTTACACTGATTCTGGGTTCATGGACGATGCTGTTCAGTGTATCAGGTTGGTTAGGAAGAAGAACCTTCAAAT ACCTCTTCGTGCTTGCGAGAATCTGCTTCGTTACATGATGAAGGTGAAACCGCCTGGTCCTTCCTGGGAGTTTTATTTGG AGATTTTGGAATGTGGGTATCCTCCAAAAGTTTATCTTTTCAATGTTTTGATGCATGGGTTTTGTAAAGTTGGTGATATT AGGAGTGCCCGGTTGGTGTTTGATGAAATTCCCAAGAGGAAATTGCGTCCGACGGTTGTTAGTTTCAATACTTTGATTAG CGGGTACTGTAAATCGGGGAATGTGGAGGAGGGTTTCAGGTTGAAGGGTGTTATGGAGAGTGAAAGAATCTTTCCTGATG TTTTCACTTTCAGCGCTTTGATCAATGGGTTGTGTAAAGAGAGTAGGTCGGATGAGGCGAACCATTTGTTTGATGAAATG TGCAGGAGGGGCTTGGTCCCCAATGGTGTTACTTTCACCACTTTGATTGATGGGCAGTGCAAAGATGGGAAGGTTGATTT AGCCTTGAAAAAATTTCAGATAATGCTGGATCAGGGTATTAGACCTGACTTGGTCACTTACAATGCTCTGATCAATGGGC TTTGCAAGGTTGGAGATTTGAAGGAGGCTAGGAAGCTTTTGAATGAAATGAATGCACGTGGTTTGAAGCCGGACAAGATC ACCTTCACTACTCTAATGGATGGATGTTGCAAGGACGGTGATATGGAATCAGCATTGGAGATTAAGAAGAGAATGGTTGA AGAGGGGATTGAACTTGATGCTGTAGCTTTCACCACACTTATCTCTGGACTATGTAAAGATGGAAGAGGTCGCGATGCAG AAAGAATGTTGAGAGATATGCTAAGTGCTGGCTTCAAACCGGATGACCCAACATATACCATGGTTATTGATTGCTTTTGT AAAAGGGGTGATGTTAAGATGGGATTCAACTTACTCAAGGAAATGCAAAGAGATGGACCTGTACCGGGAGTTATCACATA TAACGCACTAATGAACGGACTGTGCAAACAAGGTCAGATGAAAAATGCAAAAATGCTGTTACATTCAATGCTTAATTTGG GGGTGGTTCCAAATGATATTACATTTAACATTTTACTAGACGGGCATTGCAAGCATGGTAGATCTGTTGATTTTGACATA TTTAGTAGTGAGAAAGGACTTGTAACAGATTATGCTTCATATACAGCACTTGTTAATGAATGTAGTAAAACTTCAAAAGA TCGCCTGAAGAGATGATTGGTACTCAAGTTCTCCTTATCTGAACTAGCACAGATGTTGGCGGGTAGAATACATTTAAAAC TTCATTGTCTCAAGATCCATGATTGCTTTGGTAGATTGCTGAAAATATTGTGCAAAAAGGAAAGGGGAGCTTCCATCTGA TAAGTTATTTTGATGTTCAAACCAATGCCATTGTGGAAAGCCAGATGTCTTCGTGCAGGTTTGGAATTTCATTCGAAAAT GATGGTGAAGACAAAATCATGGTGGGAGAAGCAAATGCTAAACGGAGTTGCTTCTGTCCACCATGATATTTCTTTCACTG TAATTTTCGAACGAGTTTCCAAAGTGCACTTCATTATTGCAACAAGACCATAGTTATTGGGGATTGGGATTGCATCTCTC CACTTTTGTGTGCGGAATACTACTGCTGCCAAATGAGGTTCTTTTGACTGCTTGTGTGCTAAAGCAAGTTGGCTGCTATT GTCAATGCTGGAAGTTTGTTCTTTTGGTCTAAGTCAATGCTGGAAGCTAAAGACTAGATAACTAGCTAGCTAGCTTTGAG CTACCTAAGATGTCTCAGTTGCATCTAAAATGGCTTCCTATCCGCCTGATATGGATGCCCAAGTTGATACTTAAAGAAAG TGCATTGATGGCAGTTGTCAAATTGCTGATGGATTTGCAGAAGTGAGCAACATGTTGCTTGGCGCCAAAGATAGGGTAAT TAGCTAATCTGAGCAACCAAAATGGCTTCCTAACTACTTGATATGGATGCCCATGTGGATTCTTAAACTGAAGTACATTG ATGGCAAACGCCAAATTGCTTATGGATATGCATAACTGAGCAACCTATTAAGGATCCTCTCATCTGCAAATTCTCTCATG TTGAAAATTTGCATATATCTCTATTCATAAACATGTAAAGGGTCTCGCCTATACATATTTAATGCATACATGTGGAGCGG AAGGTAGACACAAAATTTGGACATTAATGAACATGAGAGGATTCCTAATCCGCAATGGATTAGAAGAAATTTTAGTTGGA AGGAGGAGAGGATTTGAAGAAGTGATTAATCATAATATTTTGCTGATTGTGGATTATGACATTAGAGTGATGATGAATTA TACCCCGTGCCCATTTTTATGTGACATGTCCTATCAAGTGGGATCAAGCCCCTACCAATGCAACATTAGAAGAAACACCT ACAGGACTGGAGTTCATTTTGATTCGCATTCGCAAATGTTGTGGCCTTGCGATGAACTGATGATTCTCAAGTTGGAAGCA GATTATTTCCTTGATCTATCTTTCTTTTGGGTCAGCTTCTTTCTTTTCTTTGTGAACCTGCAAGGGCAATTTTCGACGAT TCACAAAGTTAAATGCTATTGAAATTTCATAAGAGATTCTTCTTGCTCAAGTGTCCCACCTAGTTTTGGGATTACATGAA CTTTGAACACAAATTTCCTGGTCGGTTTGCACGCATTTGGACTTTATTTGTAACACAGAAAGAAAATTACCTGAAAACCA TAGCCGCTAATAGCATGCATCATAGCCATAAGATTTCTTATGAAATCCATTGCACATAGAACTATTAGTAGCAGTAATGA ATCAGAGGCACGAGGCTAAGGTTGGAGGTCCTTACTCAGGGACCATTCCAATAAGCTTATGTAAGAGTGTAAGACTGAAA TCCAAATTATATATTTACATTCTCA
CDS sequence (LotjaGi1g1v0095600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCATGGCTACAAAACTCCACCATTTTCACCCTTCCCTTTCTTTCTTCCTCTCTTGTCACTCTCACCTTCTCCGTTC TGCTTCTACCAACATGATCATCTTCTACTCCTCCTGGTACAATCCACCTCCTCCCTCCAAACACCATGAAATCCTCTGCA CAATCTCAGAAGCCATCAACACAGTCCACACTTCCGAAATCTACAACAAGCCACCTCTTGATTACTCCCACAACCCCAGA ATCAAACGCATTCTACCTTCCATTACACCCTTTCTGGTAACGAAACTCATCAACATCAACCCTCTTTCTCTCCCACCTTC CTCCATTTTCTCCTTCTTCAACTGGCTCGCTACTCGCCCTCCCTTCCGCCACACTCTCCGATCCTACTGCGCCATGGCGC ATTTCCTCTGCGACCATAGAATGCTCCCGGAAGCACACTCCCTCCTCTGTTTCCTCGTTTCGCGAAAGGGACACGGTTCT GCTTCTTCGCTCTTTGCTTCGTTCCTCCAAACAATGCCGACCCAACAATCTGTTCTCGTCTTTGATGTGTTAATCTCTGC TTACACTGATTCTGGGTTCATGGACGATGCTGTTCAGTGTATCAGGTTGGTTAGGAAGAAGAACCTTCAAATACCTCTTC GTGCTTGCGAGAATCTGCTTCGTTACATGATGAAGGTGAAACCGCCTGGTCCTTCCTGGGAGTTTTATTTGGAGATTTTG GAATGTGGGTATCCTCCAAAAGTTTATCTTTTCAATGTTTTGATGCATGGGTTTTGTAAAGTTGGTGATATTAGGAGTGC CCGGTTGGTGTTTGATGAAATTCCCAAGAGGAAATTGCGTCCGACGGTTGTTAGTTTCAATACTTTGATTAGCGGGTACT GTAAATCGGGGAATGTGGAGGAGGGTTTCAGGTTGAAGGGTGTTATGGAGAGTGAAAGAATCTTTCCTGATGTTTTCACT TTCAGCGCTTTGATCAATGGGTTGTGTAAAGAGAGTAGGTCGGATGAGGCGAACCATTTGTTTGATGAAATGTGCAGGAG GGGCTTGGTCCCCAATGGTGTTACTTTCACCACTTTGATTGATGGGCAGTGCAAAGATGGGAAGGTTGATTTAGCCTTGA AAAAATTTCAGATAATGCTGGATCAGGGTATTAGACCTGACTTGGTCACTTACAATGCTCTGATCAATGGGCTTTGCAAG GTTGGAGATTTGAAGGAGGCTAGGAAGCTTTTGAATGAAATGAATGCACGTGGTTTGAAGCCGGACAAGATCACCTTCAC TACTCTAATGGATGGATGTTGCAAGGACGGTGATATGGAATCAGCATTGGAGATTAAGAAGAGAATGGTTGAAGAGGGGA TTGAACTTGATGCTGTAGCTTTCACCACACTTATCTCTGGACTATGTAAAGATGGAAGAGGTCGCGATGCAGAAAGAATG TTGAGAGATATGCTAAGTGCTGGCTTCAAACCGGATGACCCAACATATACCATGGTTATTGATTGCTTTTGTAAAAGGGG TGATGTTAAGATGGGATTCAACTTACTCAAGGAAATGCAAAGAGATGGACCTGTACCGGGAGTTATCACATATAACGCAC TAATGAACGGACTGTGCAAACAAGGTCAGATGAAAAATGCAAAAATGCTGTTACATTCAATGCTTAATTTGGGGGTGGTT CCAAATGATATTACATTTAACATTTTACTAGACGGGCATTGCAAGCATGGTAGATCTGTTGATTTTGACATATTTAGTAG TGAGAAAGGACTTGTAACAGATTATGCTTCATATACAGCACTTGTTAATGAATGTAGTAAAACTTCAAAAGATCGCCTGA AGAGATGA
Protein sequence (LotjaGi1g1v0095600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMATKLHHFHPSLSFFLSCHSHLLRSASTNMIIFYSSWYNPPPPSKHHEILCTISEAINTVHTSEIYNKPPLDYSHNPR IKRILPSITPFLVTKLININPLSLPPSSIFSFFNWLATRPPFRHTLRSYCAMAHFLCDHRMLPEAHSLLCFLVSRKGHGS ASSLFASFLQTMPTQQSVLVFDVLISAYTDSGFMDDAVQCIRLVRKKNLQIPLRACENLLRYMMKVKPPGPSWEFYLEIL ECGYPPKVYLFNVLMHGFCKVGDIRSARLVFDEIPKRKLRPTVVSFNTLISGYCKSGNVEEGFRLKGVMESERIFPDVFT FSALINGLCKESRSDEANHLFDEMCRRGLVPNGVTFTTLIDGQCKDGKVDLALKKFQIMLDQGIRPDLVTYNALINGLCK VGDLKEARKLLNEMNARGLKPDKITFTTLMDGCCKDGDMESALEIKKRMVEEGIELDAVAFTTLISGLCKDGRGRDAERM LRDMLSAGFKPDDPTYTMVIDCFCKRGDVKMGFNLLKEMQRDGPVPGVITYNALMNGLCKQGQMKNAKMLLHSMLNLGVV PNDITFNILLDGHCKHGRSVDFDIFSSEKGLVTDYASYTALVNECSKTSKDRLKR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 20 | 20 | 5.0 | – | |
| Phobius | 1 | 12 | 12 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| Phobius | 13 | 20 | 8 | - | – | |
| Phobius | 21 | 27 | 7 | - | – | |
| Phobius | 28 | 615 | 588 | - | – | |
| Gene3D | 105 | 229 | 125 | 3.0E-7 | ||
| PANTHER | 124 | 301 | 178 | 3.5E-182 | – | |
| ProSiteProfiles | 125 | 160 | 36 | 5.831 | ||
| ProSiteProfiles | 177 | 211 | 35 | 8.089 | ||
| Pfam | 181 | 208 | 28 | 0.47 | ||
| ProSiteProfiles | 212 | 246 | 35 | 5.448 | ||
| Gene3D | 230 | 344 | 115 | 6.3E-32 | ||
| Pfam | 243 | 273 | 31 | 2.5E-5 | ||
| PANTHER | 245 | 380 | 136 | 3.5E-182 | – | |
| ProSiteProfiles | 247 | 281 | 35 | 10.972 | ||
| TIGRFAM | 250 | 282 | 33 | 1.3E-6 | ||
| Pfam | 279 | 310 | 32 | 1.7E-10 | ||
| ProSiteProfiles | 282 | 316 | 35 | 11.542 | ||
| TIGRFAM | 284 | 318 | 35 | 3.1E-8 | ||
| PANTHER | 311 | 472 | 162 | 3.5E-182 | – | |
| Pfam | 316 | 365 | 50 | 2.2E-17 | ||
| ProSiteProfiles | 317 | 351 | 35 | 13.581 | ||
| TIGRFAM | 319 | 352 | 34 | 5.6E-10 | ||
| Gene3D | 345 | 415 | 71 | 1.7E-24 | ||
| ProSiteProfiles | 352 | 386 | 35 | 11.575 | ||
| TIGRFAM | 354 | 387 | 34 | 5.7E-7 | ||
| PANTHER | 376 | 511 | 136 | 3.5E-182 | – | |
| Pfam | 386 | 435 | 50 | 6.0E-21 | ||
| ProSiteProfiles | 387 | 421 | 35 | 14.732 | ||
| TIGRFAM | 389 | 422 | 34 | 3.4E-11 | ||
| Gene3D | 416 | 484 | 69 | 6.6E-21 | ||
| ProSiteProfiles | 422 | 456 | 35 | 12.43 | ||
| TIGRFAM | 424 | 458 | 35 | 9.2E-10 | ||
| PANTHER | 437 | 607 | 171 | 3.5E-182 | – | |
| Pfam | 457 | 505 | 49 | 4.2E-14 | ||
| ProSiteProfiles | 457 | 491 | 35 | 12.825 | ||
| TIGRFAM | 459 | 492 | 34 | 1.4E-9 | ||
| Gene3D | 485 | 614 | 130 | 2.7E-31 | ||
| ProSiteProfiles | 492 | 526 | 35 | 11.718 | ||
| TIGRFAM | 495 | 526 | 32 | 6.3E-8 | ||
| Pfam | 526 | 575 | 50 | 6.1E-17 | ||
| ProSiteProfiles | 527 | 561 | 35 | 12.211 | ||
| TIGRFAM | 529 | 562 | 34 | 1.3E-9 | ||
| ProSiteProfiles | 562 | 594 | 33 | 5.689 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0095600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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