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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0197900 |
| Transcript ID | LotjaGi1g1v0197900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent zinc metalloprotease FtsH 1; TAIR: AT4G24710.3 pachytene checkpoint-like protein; Swiss-Prot: sp|Q8H1F9|PCH2_ARATH Pachytene checkpoint protein 2 homolog; TrEMBL-Plants: tr|G7J4A8|G7J4A8_MEDTR Thyroid receptor-interacting protein; Found in the gene: LotjaGi1g1v0197900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:40983413..40990995) extracted from Lotus japonicus Gifu genome v1.2.
AAAAATGAAGCTCTGCCTGAAAAAAGGTTGGGGGGGAAAAAGTTTTTGTAAGGCCAGTTGAGTCAAAAGGACCAGGATTG GCATTGTGTTCTTGGCGCCCATTTTGACAAAAAAACAAGGACTGTGGTTCAATTTCTCTCTCTCAAAGCAAAATGAGTGC TCCCATGGACACGGAGCAAAACCCCACAACCACAATCGACCAAAACGCCGTCGCTTCCCAACACTCACAACCCGCCGTCG CTTCTCAACACTCACCACTTCCTTCTTTCATGTTTTCCGAGGACAAAGTTCTCGTCCCTGGTACGAATTGAACCTCCCTC TCGCTCTCTCTCTCTCTCATTTCTCTTTCCACTCTACTCTGAAAAATCACTTTGATTTTGTTTCCAGTTGAGGTATGCTT AAAACCTTCCAGCACAGCTCCAATCGACCATGTCCGTTCAGCCGTTGAGGGGTAATCTCTTCTCTTTCTCTTCTTCCCTA TACTTCACTGCTAATTTTAAGGTATCATTTTTGTATTTTATGCCAATTTGTTTATATCGCTATACACTCCAGAGATTACC TAATTAAATTTCTTACCCTAATTCTAGCTTACTGTGAGTGTAATTGGAGTATTAACTAAGAGATCTATCGCATCATCGCG TTCTTTGTGATTATTATGTGAATAATGTGATAGTGTGTAATTATGGTCATTCCACTAATTTTCAGGATGCTTGAAAAGAG GAGTTTGAGCTATAGTGGAGGACCCATTCCCGTTCCCACGGATGAACCGTTTCTTACAGATAACGTGCAAAGAATTTGTG TTTGTGATACAGGTATGTTATGCATTTCTTTATTTTTAATTGTCTGCACTGTAAGTGGTAAGTCTGCTTTCCATCATTCT GGAGTGACAAGATGTGAAGCTTCACTCATTTCATTTCAAATATGATGTTTTTTCCCCTGAATCTGAAAATCCAGAGACTC TTCTCTTGGTCTCTTACTTACTTGAATTGAGTGGTTTATTGTGGTGAACAAACTTTCAACTCAATTCATATGAAGAGTTT AGTTCATTTATCATAAAGTGCCTGTGAAGACGGATAGCCTAATACACGTTTAGCAATCAGGTTGACAAAATGGAAGATTA GTGTTAAGATGAAATGGATTTTCTTCTTGAGCTTTTGAAGCAATCATTCCCTAGACACAGAGAGATAGAGAGATTTATTT CTCCTTCTATGATTTTGGTGCTTTTCTTTTTTTGTAGATGAAGGGATGCACGATGATAATGTTCTTTTGTTCTGGCAAGT CAAACCAGTTGTACACGTCTTTCAGGTAATACTGTTGCCATATCCTTGACTCCTTGTTCAACTAATATATTCAAGAATTA ATACATGGTCCTACAATTTCTCCCGTTCTGTCTTTTCATACTTGTTACTTGGTCAAATGATCTTCTCGCATATATTAGGT AAACTACCAGATGAGTTTATAACTATGCGATGTTTCACTATATATTCAATATCACATTCCCTCATTGTCAATTTGTATGT CTCTCTAGTCTAGACAATAGAATATCTTTCTTCTGTTTTTATTTAAGTTGAATCACAGCTCGGAACTTCATGAATATTGT CTGGGTTTTACTTTGTCAGCTTAGCGAGGAAGGACCGTGCGAGGATGTAAGCTCTGATGGCCAGTCTTCTAGCTTCAATG AGTGGATGCTTCCTGCAAAAGAATTTGATGGCATGTGGGAAAGGTTCATACTTCTTAGTAGTCTATGCTTTTCCTCAACT AATTCTATTATATTATTGTTGAATATCTGTTAAAATTTAGTTTATTATTAGTCTTATCTCATAGAGATATAGTTAAGTTT TGTTTCTCTATTTTAGATTAATATCTTTTAAATAGAGATAGGTTTAGATAGATTTAGTTTCTTTTTATCTCTTTGTTAGT CTATATATATTGTAGTCTATATAGTCAGGTATTATTAATGAAAATACACAAGAAATATTTTATCAGATTCAAGTATTATT ATTTTTTCTTTATAAGTAATATTAATAATTACAATCTAAATTTGTTTAACCTGCACTGTCTACCATTTCTCTTGCAGCTT AATATATGAATCTGGCCTAAAGCAACGATTGTTACGTTATGCAGCAAGTGCTTTGCTCTTTACTAAAAAGGGTGTTGACC CATTTCTAGTTTCATGGAACCGGTAACCACTTGAAATATTTGGTTATTATTTAGTTTGGTTTTGGCTCTGACTTTCTTTG TACGATCTGCAGTTCTGAAGATTTGTTTTACAATTGCATGTGTTTTCTAATGTTCATGTCCATGATCTTGCCGGGCAAAC TATATGTATCATATTAATTCATATATAATTGTAAAACCCTAATTTCTGGACCTGAAAGTCAACTCCATACAGCGGCAGCA CGAGCTGGACATTTATTAAGTGGTTTACTTCAAATTCCTTGAAGAGAAAATTGTGCAGCTTATGGAACTATGGCAAACAA AAGTTTATTGTCAAAACCTGTAATCTTTTTTAAACTCTTTGCAAACGTTAGAAACCAAGAATAGCACTGCAAAAAGAACA AGGGAAGGAGAATAACAACTTGCTGATGGTGGGCCATAGGGGTGAAATGGGCTGGGCTAGGCTAGGCCTGGCTTTCATTC GGAACTCGCGACCCAAGCCTTGGCTTGTGGCCTTTCGTAGGCCAAATTTTAAGGCTGGCCTTCTAGGAGGCCTGACCTGG CCTATGAGCCTGTTTGAAAGCCTACTTACCTAAAAATGTCCTCTTAAAGAGGCTAATAGGCCAATAGGCTAATAGGCCTT GGGGCTAATAGGCTACGAGCTAATAGGTCAGCGGGCGTATTTTCAATTTATATCAACAAACACAAACAGGATGCTGCCAC CACATTGAATCTAAAGTTAAAACTAAACTTGAAACACAACATGTTTGATACCACATTAACATACACCTATTTGAAACAAA CACAACTAAGAAATCATGAAACAGGGAGATGAAAAAGAACCTTGAATCAGAGATGATGTGGTGGCCATGCTTTATGGTGA CTTGGACGATGAACGTGCTCCATTGGGGTTGCTCCTCGGTGGTGCCCGCTCCTCCTTGGTGGTGGTCGGACGGGAAGTGG AGGGCTGGCGGCGGTTGCTTTAGGCCTTGAGGAGTTGAGCGGCTGCTGGGTGAGAGGCTGAGAGAGTGAGAGTTAATAGA GTCCTCGAGGGTTAGCTCAAGTGGTAAAAGCTAGGGGACATAAGGGTTGGGTGGGATGAAGGGTGAAGGGTCCAGGGTTC GAACCCTGAGGAGAGACTAATTTACAAACATTACTAACAACTAACATTTACCTATAAAAAAACAGAGTGAAAGACAAAAG GAGAGAACTTTTCTAATTTAGGTTTTCATCTTAGAATCTTCTCTTTTAGTTTTTAGTATTTTTGTATTTTTTAGACATGA TATTAAATTTATTAATATTTTTTGTTACAATTAAATTTATTAATTTATCAAAAACAATAATTAGGTAAGTGGGCCGGCCT ATCAGGCCTAATGGGCTTTTTTGTAAGCCTAGGCCTAGCCTTTTTAACTAATCAAGGTTTTTTCAAAGCCTAAGCATGGC CTTTTTAGCAAATAAGCCCGGCCTTTGGTAGGCTAGTTCGTAGGACACCAACGAGCCGCCCGGCCCTGGGCCCGTAATTT ACTCTCTTCTTTGAGACTGAATCCTACTGAAAGTGAATAGTTTGTATTTTACAACAAATAATAACATTTAGTCTGTTTTC TGTATAGAAAGTATGAAGAAAAGCATGTTTCTTTATCTCTTTTTGTCTAATTTTTATATTGTCAGTAAAACTGTTTTGGG AAGTAATAATGGCCAAGGTCATAGATAATCTTCAGTGTGATGATTGAACTGTGAACATATTTGATATTTTTGAGACTTTT AAATATTTGCAGCATAGTTCTTTTACATGGACCCCCAGGAACTGGAAAGACGTCTTTATGCAAAGCATTAGCTCAGAAAC TATCAATTCGATTCAATTTAAGGTGCATTGATCTATTATTAATTTGTAATGTTATGATATTTGCCAGTGAAAACAAGTAA ATAAAGGGAGCAAAAATTAACCTTTGCCTTTTTTATTTTACACACTCAGATACCCACATTGCCAGCTTATTGAAGTGAAT GCACATTCTTTGTTCAGTAAATGGTTCTCCGAAAGTGGCAAGCTGGTATGCATGAACGCCTTTACTTAGGTTTATGACTC TTTCATTGGTTTGCTTATTCTTTTTTCCTTAAGTCACAAACTTATTGCGAATTGACTCCAAAACTTCTTGGTTTCTTTTC TGTTAAGTGGGGCATAGAATTTCCTGTATGTATCATTGCCACTGGCAAGTTTATATTAAGTAAGATCTAAGGATTGGTTG ATTCAGGGTGCTAGGACCTAGGAGGAACACCTTTTGGTAGATAGAACTTAGAATTGCACGCTGAAAATGTGGAATTTCAT TATTTGTTCCTATGTATTAGGCAAGACTTTTTTTAACTTTGGTTAGTGTCTCCAGATATTTTCCTATAGCACTGGATAAA GTTGTTTGGGTGCCATTCTACTTCCATATGATGGATAACAGTTTTTTATGGGAACACATTTACTTGAACATTATTACTTT GGGAGTAGACTTAATTTTAGATAGAATTTTTTCATCTTTCAACTGGACCAGTTTTCCTTGTTTGTAGTTTTTCATTGGAG GATGTCGTATCCTCCCTTGATACGTCCTCTAGATGGGTGTGTGTAGGTATGTAGGTCCACCAAAGTCGTAAATCAATTGG GGGATGGAGTTGATCTAGCATAATGGTGGTCATGAGTTTGAGCTCTAGGTATGGAGCTGTGCTAAACTTAGAGTGAGAGT TTTGAGACCAATTTTGCTCTATTTGGCTTGAGTATATTGCAGATATATCTACCAAGAGGGAACTTTATAAGCGAGAATGA GAAGAGTAAATCTTAACCATGACAACCCTAAACCCTAAATACATGGATGATCAATATTAAAGGTTATTTAATGGTTACAT GACCATTTAAAAATGATAAGTTACTGCTTAAAAACATCATGTGAGTATGTTTTAATCTTGATTATTTATTATTAGATCTT ATTATTAAGATTTTATTATTCTCATTATCATGTATCATGTGAGCGGATTTATTGTGAGAGAGAGATAAGAGGAGTATATC TTGAAATGGTGAAGATTAAAACATAGCCATGTGATCATGTAATCATTTAATAATGTTTAAGCTTAATCATCTATATTTGA TTATTATACGTCATGATTTTAGGTCTAATCTCTCATAATAAGTCTTCTTTACATGATATATAGATAATGTGATGAGGAAC AAGTCAGTTACATATTTACATGTACGAGACAAATGTCTTTTTTAGTTAACATTAATCCAAGAATCCCTTACACTTTGAAA TTGCCAACCATAAAAATGCAGTATCCGATACATGAGTGTTTTTGTATGGTTTGTTGAATGCGTGACTGTTTCTTTGTTTT CAAGGTAGCAAAACTTTTTCAAAAGATTCAAGAAATGGTGGAGGAAGAAGGCAATCTAGTATTTGTTTTGATTGGTGAGG CATAACAGGACAAAATTCAACTTAATGCCCATGTTTTTGTTCTTATCTGCTTGAGCATATATGCTTGTAATCTGCAGATG AAGTTGAAAGCCTAGCTGCTGCAAGAAAAGCTGCCTTATCTGGTTCTGAACCTTCGGATTCTATTCGGGTAAAGGCCTCC CTCCTGTGCTCCTGGCTGGAATATACTCCCTTCTTCCCACTATTGAAAAATTTAGATTGCACACAAACACGCTAAGTGTC ATTCGGAGGTATTTTCTCTTTTTAGTGTGTTTGTGTATTAATGCAATTTAAATCTGAATATGCAATTTCAGGTTGTCAAT GCTTTGCTAACTCAGCTGGACAAGTTAAAATCAGCTCCAAATGTGATAATTCTAACCACATCCAACATAACTGCTGCCAT CGGTAAGCCTTAATCAGTTCTCATAAATTTAATTTTACGGCTGCAAGTTATGTCCTGTCGTCCCATAAATTTGAATAGTT AGATCTGTTTTGGTCATAATTTGAACAGTAAGAACAGAAGATGTAGCTTCCCGATACTGGGATGTAGTGAATTCTTGATT TTATCATGACTAACGGTGGGAGTTGGAATCCTGTACAGTGCATAATGGCCTGTTTGGGGTATTTGAATTTGGAAGTCAAA TTTTTACAAAATGTTGCCAGCATAAGCACTAGAACAGTAAGGATTATGCTCCTCCTCTAGAGTGAGACTCACATTAGAAA AATCAATGGTTGACCATAATGCTATACATGTGCAAGTATATGATCACAATCACAACCGTTAATTTTTCAATCAACAGCTG TGATGACTTACTCTACACTCTAAAATGAGTCCCTCTAAAGGGAGCCAAATCTGAACAATAATATGCCCAGATCTGAAAAT AACACCACTTTCATATAAAGCACATCACAACAATAGTCTTTCTCTACCAAGCGGGAACACCACCCCCATGTCTTGTTAAA ATAGTTTCTTCAGTATCCACTTCCCTCATAAATTTTCATTTGAAATGCATTGTTTTCATATGTTGCGGATCATACAGATT TATTGCTTTTATTGCAGATATTGCTTTTGTTGATCGAGCTGATATCAAAGCATATGTTGGTCCCCCAACTCTTCAAGCTC GGTATGAAATATTAAGGTCTTGCGTGCAGGAACTGATCCGTTCAGGGATATTAGCTAGTTTTCAGGTGAAGAGACTTCTC AATCTTGTCCAGGAAACTTTTATAGAAACAAGAAAGCCATTCATATTTTAATCTTTGTTCGGATTCAGACATTATGGCCT TGTTAGTCTTACAGGTTACAGCTAATAATACTTCCTTGGTTAGGATTGTAAGAATGTCATGCTTCCAAATTATGCTAACG CAAAGGAGAGGTTGAGCGCACCAGATTTTCATGAGCCTGATGCATCCATTCAACTGTGCAAGCAACTACTTGAAACTGCA GAGGCATGTGAGGTAGGAAAAAAGTACTACTTGTGGATCTTGAACCTCACAATCTTGACGTGGTTAACTCTTAATTTTGA CTGTTGTGTTTGATTTGTTAACAGGGAATGAGTGGAAGGTCTTTGAGAAAGCTTCCATTTCTGGCACATGCTGCACTTGC AAATCCTTTTGATTGCAACCCTATTAAGTTCTTGTGTAAAATGGTAGAAACAGCAAAGCGGGAGCGTTCTGAGCTTCCCG ACTAAATTAACTCGAGTTTTCAATTAAAAATGCTAATCAGTAGTGTAACGTTTACATCTGTTAGTGCGATAAATGTTGGT GCAGCAATGATGGATATTTATTATGTCACAGTTAACATTGCGATGAACACTTAACAGGACCTACATACTTATATGAGATG CACCTTTCTGATTTCGCATGCTGACGATAGGGTTAGGCAATTTTAGTGGAGCACTTGAAGACAGAAAATTAGATGTAGGT ATACATTCCATACAACATACCATCCTAAATTCAAATCTCTTATGGTTGGTTCCATAGGTCTTA
CDS sequence (LotjaGi1g1v0197900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGCTCCCATGGACACGGAGCAAAACCCCACAACCACAATCGACCAAAACGCCGTCGCTTCCCAACACTCACAACC CGCCGTCGCTTCTCAACACTCACCACTTCCTTCTTTCATGTTTTCCGAGGACAAAGTTCTCGTCCCTGTTGAGGTATGCT TAAAACCTTCCAGCACAGCTCCAATCGACCATGTCCGTTCAGCCGTTGAGGGGATGCTTGAAAAGAGGAGTTTGAGCTAT AGTGGAGGACCCATTCCCGTTCCCACGGATGAACCGTTTCTTACAGATAACGTGCAAAGAATTTGTGTTTGTGATACAGA TGAAGGGATGCACGATGATAATGTTCTTTTGTTCTGGCAAGTCAAACCAGTTGTACACGTCTTTCAGCTTAGCGAGGAAG GACCGTGCGAGGATGTAAGCTCTGATGGCCAGTCTTCTAGCTTCAATGAGTGGATGCTTCCTGCAAAAGAATTTGATGGC ATGTGGGAAAGCTTAATATATGAATCTGGCCTAAAGCAACGATTGTTACGTTATGCAGCAAGTGCTTTGCTCTTTACTAA AAAGGGTGTTGACCCATTTCTAGTTTCATGGAACCGCATAGTTCTTTTACATGGACCCCCAGGAACTGGAAAGACGTCTT TATGCAAAGCATTAGCTCAGAAACTATCAATTCGATTCAATTTAAGATACCCACATTGCCAGCTTATTGAAGTGAATGCA CATTCTTTGTTCAGTAAATGGTTCTCCGAAAGTGGCAAGCTGGTAGCAAAACTTTTTCAAAAGATTCAAGAAATGGTGGA GGAAGAAGGCAATCTAGTATTTGTTTTGATTGATGAAGTTGAAAGCCTAGCTGCTGCAAGAAAAGCTGCCTTATCTGGTT CTGAACCTTCGGATTCTATTCGGGTTGTCAATGCTTTGCTAACTCAGCTGGACAAGTTAAAATCAGCTCCAAATGTGATA ATTCTAACCACATCCAACATAACTGCTGCCATCGATATTGCTTTTGTTGATCGAGCTGATATCAAAGCATATGTTGGTCC CCCAACTCTTCAAGCTCGGTATGAAATATTAAGGTCTTGCGTGCAGGAACTGATCCGTTCAGGGATATTAGCTAGTTTTC AGGATTGTAAGAATGTCATGCTTCCAAATTATGCTAACGCAAAGGAGAGGTTGAGCGCACCAGATTTTCATGAGCCTGAT GCATCCATTCAACTGTGCAAGCAACTACTTGAAACTGCAGAGGCATGTGAGGGAATGAGTGGAAGGTCTTTGAGAAAGCT TCCATTTCTGGCACATGCTGCACTTGCAAATCCTTTTGATTGCAACCCTATTAAGTTCTTGTGTAAAATGGTAGAAACAG CAAAGCGGGAGCGTTCTGAGCTTCCCGACTAA
Protein sequence (LotjaGi1g1v0197900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSAPMDTEQNPTTTIDQNAVASQHSQPAVASQHSPLPSFMFSEDKVLVPVEVCLKPSSTAPIDHVRSAVEGMLEKRSLSY SGGPIPVPTDEPFLTDNVQRICVCDTDEGMHDDNVLLFWQVKPVVHVFQLSEEGPCEDVSSDGQSSSFNEWMLPAKEFDG MWESLIYESGLKQRLLRYAASALLFTKKGVDPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFNLRYPHCQLIEVNA HSLFSKWFSESGKLVAKLFQKIQEMVEEEGNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQLDKLKSAPNVI ILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCVQELIRSGILASFQDCKNVMLPNYANAKERLSAPDFHEPD ASIQLCKQLLETAEACEGMSGRSLRKLPFLAHAALANPFDCNPIKFLCKMVETAKRERSELPD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 41 | 460 | 420 | 1.1E-182 | – | |
| Gene3D | 144 | 366 | 223 | 1.4E-40 | – | |
| SUPERFAMILY | 151 | 431 | 281 | 4.21E-38 | ||
| SMART | 197 | 349 | 153 | 1.2E-11 | ||
| CDD | 199 | 347 | 149 | 1.84745E-17 | – | |
| PRINTS | 201 | 219 | 19 | 1.6E-5 | ||
| Pfam | 201 | 346 | 146 | 3.9E-32 | ||
| PRINTS | 315 | 329 | 15 | 1.6E-5 | ||
| ProSitePatterns | 319 | 338 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi1g1v0197900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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