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LotjaGi1g1v0289100.1

Overview

Field Value
Gene ID LotjaGi1g1v0289100
Transcript ID LotjaGi1g1v0289100.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Importin subunit beta-1; TAIR: AT5G53480.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q9FJD4|IMB1_ARATH Importin subunit beta-1; TrEMBL-Plants: tr|V7ASE2|V7ASE2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0289100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:70068821..70073351) extracted from Lotus japonicus Gifu genome v1.2.

GTAGTAACCGCAATTGAGAATACTTCTTGGTCTTTGTTCACTGCTCTCTCTCTCTCTTTCTTTCTTTCTCCCTCTCGCTC TCGCTCTCGCTCTCTTTGCCGCTGACTCACTCACTCTCCTTCGTTCCCTCTCTGTTTCGTTCCTTCAGATCTCTTCTCCG ATTCCGCCAGGTAACTACGTTAATCCGATCTCACCATTTTCATTCGTTTCCGATTTCACCTTATTTTTTGTTTGGGCGTT TTTCGATTTTGTTTTAGGGTTCTTCACTGCGATTGTTCTATTGTGTTTTTGAATTATTGTAATCGATTTGAATTGGTTTT TGTATTCACTTCGATTCGATTCGATTCGATCTCTCGTCGATTTGAATCCGAAGCAAACCACATTCCAATTGCAGATTTGC TTGGTTTAACGCGTATGTGATATAGGTTTTCATTTCAACTGATCATAGCATGTGTTTAATTTCAGAAATTCAATTTATAT ATACAGGTTTTTTCTTTGTAGCAGAATCATATGATATGATTTTATATTTTGTAATATTTTCCTGTTAGGTAATATTGCTA CAGAATGAGTTCAAAATTTGCTGGCAATTTTGTTGATTTCTGGATTTGAGATTGAGATAATTTGACGAATACTTGCTTCT TCAATTGATTTATTGACTTGCCGTGCCGATTTTTGTTGAAATTTACTTTTTAGTGGAAATTTAAGTAAGAGCTGATTTTA TGTTTTGTTTTATTAGGTATAGCATGGCGATGGAAGTTACTCAGGTGCTTTTGAATGCACAATCGATAGATGGGAATGTA CGGAAGCATGCTGAAGAAAGTCTGCGACAGTTTCAGGATCAAAACCTTCCTGTTTTCTTGGTCTCCCTCTCTGGGGAGTT AGCGAGTGAGGATAAACCAGTGGATAGCCGGAAGCTGGCGGGCTTGATACTTAAGAATGCGTTGGATGCCAAGGATGAGA ACAGAAAGCGGGAGTTGGTTCAAAGATGGTTGTCGTTGGATCATGCTGCGAAGACCCAGGTTAAGTCGTGCTTGTTGCAG ACTCTCTCTTCTCTTGTGGTTGATGCCCGGTCTACAGCAACTCAAGTTATTGCTAAGATTGCCGGGATTGAGCTTCCTCA GAAACAGTGGCCTGAGTTGATAGGGTCACTTTTATCAAATATTCATCAGGTTCCTGCCCATGTCAAGCAAGCAACTTTGG AGACTCTGGGGTATTTGTGTGAGGAAGTCTCTCCTCAGGTTGTTGATCAAGATCAAGTAAATAAAATACTTACTGCTGTA GTTCAAGGTATGAATGCGTCTGAAAGTGATAATGATGTTAGGCTTGCTTCCACTAGGGCATTATACAATGCTCTTGGATT TGCTCAGGCTAATTTTAGCAATGATATGGAGCGTGATTATATCATGAGAGTTGTTTGCGAGACAACTATGTCTCCCGAAC TGAGAATACGACTGGCAGGTTTTGAATGTTTGGTCTCGATTGCTGCGATGTATTATGAGAAATTGGCTCCTTACATCCAG GGTATATATGACATCACAGCAAAGGCTGTTAGGAGTGACGAGGAGCCTGTTGCTCTTCAGGCCATTGAATTTTGGAGTAC CATTTGCGATGAGGAGACTGATATCTTGGAAGAATATGTGGGTGATTCCACAGGGGACTCTGATATGCCTTGTTTTTATT TTATTAAGCAAGCTCTTCCTGCACTTATCCCTCTGCTTTTGGAAACATTACTCAAACAAGAAGAGGATCAGGATCTGGAT GAAGGGGCGTGGAATATTGCTATGGCAGGGGGTACATGCCTTGGTTTAGTTGCTCGTACTGTTGGAGATGATATTGTGCC ACTGGTAATGCCCTTTATTGAGGAAAATATTACAAAACCAGATTGGAGACCGAGGGAGGCGGCTACTTATGCTTTTGGCT CTATCTTGGAGGGGCCTTCCCCAGACAAATTAGCAGCTCAAGTTAATCGTGCTTTACCATTTATGCTTACTGCCTTAGTG AACGATCCAAACAACCATGTAAAAGACACTACTGCTTGGACTTTGGGACGAATGTTTGAATTTCTTCACAGTTCAATTAT TGGTACACCAATTATTAATGAGGGAAATTGCCAACAGATCATTACAGTTCTCCTTCAGAGCATGAAGGACGTCCCCAATG TTGCTGAGAAAGCCTGTGGTGCTCTGTATTTTCTCGCCCAAGGCTATGAGGATGAGGGACTCGCATCTCCTCTAACTCCT TTTTTCCAAGAAATTGTTCATTCCCTTCTTACTGTTACCCACAGGGAGGATGCTACGGAATCACGATTAAGAACTGCAGC ATATGAAACATTGAATGAAGTGGTAAGGTGTTCCACTGATGAAACAGCTCCTTTGGTGTTAGAACTAGTGTCAGTCATCA TGATAGAGCTACACAAATGTCTTGAATCACAAAATCTTTCATCTGATGAAAGAGAGAAGCAGAGTGAACTTATAGGCCTT CTTTGTGGATGCTTGCAAGTGATTATACAGAAGTTAGGGTCTTCAGAAGCTACAAAATATGCTTTCTTGCAGTATGCTGA TCAGATAATGGGATTGTTCCTCAGGGTCTTTGCTTGCAGAAATGCCACTGCACATGAAGAGGCAATGCTAGCAATTGGAG CTCTTGCCTACACGATAGGCCCTGATTTTTCTAAATACCTGCCTGAATTTTATAAGTTTATGGAGATGGACCTTCAGAAT TTTGAAGAATACCAAGTATGTGCTGTTACTGTTGGTGTGGTAGGGGACATATGCAGGGCATTGGAGGATAAAATACTTCC TTATTGTGATGGGATTATGACTCAACTTCTCAAGAATTTGTCAAGTGATAATTTGCACCGATCTGTAAAGCCTCCATTAT TCTCATGCATTGGTGATATAGCTCTTGCAATAGGAGATAACTTCAATAAGTATTTAATGTATGCGATGAACACGCTACAG CTTGCTGCAGAAATGTATGCCCACACGTCAGGTTTTGATGACGAGATGACTGAGTACATTAATTCCTTGAGAAATGGGAT ATTGGAGGCATATTCTGGGATTTTTCAAGGGTTTAAGAACTCATCGAAAACTCAGCTCTTGATTCCATATGCTCCTCATA TCCTCCAGTTCTTGGATAGCATATACATGGAAAAAGACATGTGAGAAAGAATTTTTTTTCTTCTTTTCATTGTTTCTTTG TAATATGTCCCATTATTTTTACTGACTTCATTTACTTTTTCAATGCAGGGATGACGTGGTTATGAAAACAGCAATTGGAG TGCTTGGAGATCTTGCTGATACTCTTGGAAGCAACGCTGGTTCTATAATACAACAGTCTTTGTCAAGCAGAGAATTTTTA AATGAATGTTTGACCTCAGAAGATCATTTGATTAAAGAATCTGCTGAGTGGGCCAAGTTGGCTATCAATCGTGCTATATC TGTTTGAGGTTCATCTGATTTAGCATATCCTTTATCATAAACTACATGCATGCATTTGGGTGAGTTGAGGGCAGCGGGTC TTGGGATTGCATGTGTCAAATCGTCTGCATAGTCACTGGTCAGACAACGGAAGGTATCTATTAGAAGGTCTTCAAGTTGT CACTAACTCTTGCATCATCACCAATGCATCACTGACTTTTGCATGAGCACCACTGAGTCCAGCACGGTCAAGAGGAGGAA GAAGGTATTGGCGGGTTTGCAAATGTGGGTCCTGTAGGTCTTCATGAAGCATATAGTTGGTTGAATGGCCGAATGGAGGT AACTGATTCATGATTCATGATTCAGAAGCTAACCTTCTCTTAGTTGGACTTGGATATTGAGCTTGAAGTTGGTATCATCC AAGAACGGACCCTTTCTAGGCTGAAAATGGATTTTTTTTTCCTGAACTGGTCATGGGTGATTGGAAAGGATGAACCTCAC AGGGTTGAACTGGTTTTCATCAGCACCACCTAAGTGCTTTGTTTCTAGAAAATCCTCTTCATTTTTCTGACTTTTAACCC TGCATCATCTTGAATTATTTTGTTCATCGTCCCGTTGTGTATAAATGGTCCCTAGGCTGTTTATCATCCATATTAATTTC TCTCTCCTTTATTACATTTCTAGGGTGAGGGTCGTTTGTAGTTGGTGACCCAGAAGGGGAGAGATTATTTCCTACTTGCA TTATGCATTTCTGTTTTGATGTCAGTTTCTTAGGTCAAAAATCATCATGCATTCATGAAATAAGCATCCCTTTCTAAATT TCTTTGTTTTGAAATGTTCATATATTGGCTATTCATATGGATTGGAACCAAAACTGGTCTTATATTTGTGATGTCAAAAG AACCAACAGATTGCGTTGGATTGCTGCGTTTGTTATTTTGGGAATTTTGATGCACTGGGCATTCAAGTGTTATTTCCTGT ATTATTATGGTTTGGTGATATGAACTTTTTTGTTCCCTGAGACAATATGAAATTGTATATAATGTTTGGCTACTTTCAAT TGGCAGATTTTAAATTCCATATTTTGAGATAATCATATTTTGAGATAATCA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0289100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGATGGAAGTTACTCAGGTGCTTTTGAATGCACAATCGATAGATGGGAATGTACGGAAGCATGCTGAAGAAAGTCT GCGACAGTTTCAGGATCAAAACCTTCCTGTTTTCTTGGTCTCCCTCTCTGGGGAGTTAGCGAGTGAGGATAAACCAGTGG ATAGCCGGAAGCTGGCGGGCTTGATACTTAAGAATGCGTTGGATGCCAAGGATGAGAACAGAAAGCGGGAGTTGGTTCAA AGATGGTTGTCGTTGGATCATGCTGCGAAGACCCAGGTTAAGTCGTGCTTGTTGCAGACTCTCTCTTCTCTTGTGGTTGA TGCCCGGTCTACAGCAACTCAAGTTATTGCTAAGATTGCCGGGATTGAGCTTCCTCAGAAACAGTGGCCTGAGTTGATAG GGTCACTTTTATCAAATATTCATCAGGTTCCTGCCCATGTCAAGCAAGCAACTTTGGAGACTCTGGGGTATTTGTGTGAG GAAGTCTCTCCTCAGGTTGTTGATCAAGATCAAGTAAATAAAATACTTACTGCTGTAGTTCAAGGTATGAATGCGTCTGA AAGTGATAATGATGTTAGGCTTGCTTCCACTAGGGCATTATACAATGCTCTTGGATTTGCTCAGGCTAATTTTAGCAATG ATATGGAGCGTGATTATATCATGAGAGTTGTTTGCGAGACAACTATGTCTCCCGAACTGAGAATACGACTGGCAGGTTTT GAATGTTTGGTCTCGATTGCTGCGATGTATTATGAGAAATTGGCTCCTTACATCCAGGGTATATATGACATCACAGCAAA GGCTGTTAGGAGTGACGAGGAGCCTGTTGCTCTTCAGGCCATTGAATTTTGGAGTACCATTTGCGATGAGGAGACTGATA TCTTGGAAGAATATGTGGGTGATTCCACAGGGGACTCTGATATGCCTTGTTTTTATTTTATTAAGCAAGCTCTTCCTGCA CTTATCCCTCTGCTTTTGGAAACATTACTCAAACAAGAAGAGGATCAGGATCTGGATGAAGGGGCGTGGAATATTGCTAT GGCAGGGGGTACATGCCTTGGTTTAGTTGCTCGTACTGTTGGAGATGATATTGTGCCACTGGTAATGCCCTTTATTGAGG AAAATATTACAAAACCAGATTGGAGACCGAGGGAGGCGGCTACTTATGCTTTTGGCTCTATCTTGGAGGGGCCTTCCCCA GACAAATTAGCAGCTCAAGTTAATCGTGCTTTACCATTTATGCTTACTGCCTTAGTGAACGATCCAAACAACCATGTAAA AGACACTACTGCTTGGACTTTGGGACGAATGTTTGAATTTCTTCACAGTTCAATTATTGGTACACCAATTATTAATGAGG GAAATTGCCAACAGATCATTACAGTTCTCCTTCAGAGCATGAAGGACGTCCCCAATGTTGCTGAGAAAGCCTGTGGTGCT CTGTATTTTCTCGCCCAAGGCTATGAGGATGAGGGACTCGCATCTCCTCTAACTCCTTTTTTCCAAGAAATTGTTCATTC CCTTCTTACTGTTACCCACAGGGAGGATGCTACGGAATCACGATTAAGAACTGCAGCATATGAAACATTGAATGAAGTGG TAAGGTGTTCCACTGATGAAACAGCTCCTTTGGTGTTAGAACTAGTGTCAGTCATCATGATAGAGCTACACAAATGTCTT GAATCACAAAATCTTTCATCTGATGAAAGAGAGAAGCAGAGTGAACTTATAGGCCTTCTTTGTGGATGCTTGCAAGTGAT TATACAGAAGTTAGGGTCTTCAGAAGCTACAAAATATGCTTTCTTGCAGTATGCTGATCAGATAATGGGATTGTTCCTCA GGGTCTTTGCTTGCAGAAATGCCACTGCACATGAAGAGGCAATGCTAGCAATTGGAGCTCTTGCCTACACGATAGGCCCT GATTTTTCTAAATACCTGCCTGAATTTTATAAGTTTATGGAGATGGACCTTCAGAATTTTGAAGAATACCAAGTATGTGC TGTTACTGTTGGTGTGGTAGGGGACATATGCAGGGCATTGGAGGATAAAATACTTCCTTATTGTGATGGGATTATGACTC AACTTCTCAAGAATTTGTCAAGTGATAATTTGCACCGATCTGTAAAGCCTCCATTATTCTCATGCATTGGTGATATAGCT CTTGCAATAGGAGATAACTTCAATAAGTATTTAATGTATGCGATGAACACGCTACAGCTTGCTGCAGAAATGTATGCCCA CACGTCAGGTTTTGATGACGAGATGACTGAGTACATTAATTCCTTGAGAAATGGGATATTGGAGGCATATTCTGGGATTT TTCAAGGGTTTAAGAACTCATCGAAAACTCAGCTCTTGATTCCATATGCTCCTCATATCCTCCAGTTCTTGGATAGCATA TACATGGAAAAAGACATGGATGACGTGGTTATGAAAACAGCAATTGGAGTGCTTGGAGATCTTGCTGATACTCTTGGAAG CAACGCTGGTTCTATAATACAACAGTCTTTGTCAAGCAGAGAATTTTTAAATGAATGTTTGACCTCAGAAGATCATTTGA TTAAAGAATCTGCTGAGTGGGCCAAGTTGGCTATCAATCGTGCTATATCTGTTTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0289100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAMEVTQVLLNAQSIDGNVRKHAEESLRQFQDQNLPVFLVSLSGELASEDKPVDSRKLAGLILKNALDAKDENRKRELVQ RWLSLDHAAKTQVKSCLLQTLSSLVVDARSTATQVIAKIAGIELPQKQWPELIGSLLSNIHQVPAHVKQATLETLGYLCE EVSPQVVDQDQVNKILTAVVQGMNASESDNDVRLASTRALYNALGFAQANFSNDMERDYIMRVVCETTMSPELRIRLAGF ECLVSIAAMYYEKLAPYIQGIYDITAKAVRSDEEPVALQAIEFWSTICDEETDILEEYVGDSTGDSDMPCFYFIKQALPA LIPLLLETLLKQEEDQDLDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFIEENITKPDWRPREAATYAFGSILEGPSP DKLAAQVNRALPFMLTALVNDPNNHVKDTTAWTLGRMFEFLHSSIIGTPIINEGNCQQIITVLLQSMKDVPNVAEKACGA LYFLAQGYEDEGLASPLTPFFQEIVHSLLTVTHREDATESRLRTAAYETLNEVVRCSTDETAPLVLELVSVIMIELHKCL ESQNLSSDEREKQSELIGLLCGCLQVIIQKLGSSEATKYAFLQYADQIMGLFLRVFACRNATAHEEAMLAIGALAYTIGP DFSKYLPEFYKFMEMDLQNFEEYQVCAVTVGVVGDICRALEDKILPYCDGIMTQLLKNLSSDNLHRSVKPPLFSCIGDIA LAIGDNFNKYLMYAMNTLQLAAEMYAHTSGFDDEMTEYINSLRNGILEAYSGIFQGFKNSSKTQLLIPYAPHILQFLDSI YMEKDMDDVVMKTAIGVLGDLADTLGSNAGSIIQQSLSSREFLNECLTSEDHLIKESAEWAKLAINRAISV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:1.25.10.10
1 871 871 0.0
IPR011989
PANTHER
PTHR10527:SF63
2 869 868 0.0
IPR027140
PANTHER
PTHR10527
2 869 868 0.0
IPR040122
SUPERFAMILY
SSF48371
3 861 859 1.98E-155
IPR016024
Pfam
PF03810
23 102 80 2.4E-11
IPR001494
ProSiteProfiles
PS50166
23 103 81 17.107
IPR001494
SMART
SM00913
23 103 81 7.0E-9
IPR001494
Pfam
PF13513
381 437 57 2.4E-9 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006606
Biological process Protein import into nucleus The directed movement of a protein from the cytoplasm to the nucleus.
Subterm of
GO:0006886
Biological process Intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
Subterm of
Part of
GO:0006913
Biological process Nucleocytoplasmic transport The directed movement of molecules between the nucleus and the cytoplasm.
Subterm of
GO:0008536
Molecular function Ran GTPase binding Interacting selectively and non-covalently with Ran, a conserved Ras-like GTP-binding protein, implicated in nucleocytoplasmic transport, cell cycle progression, spindle assembly, nuclear organization and nuclear envelope (NE) assembly.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0289100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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