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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0329100 |
| Transcript ID | LotjaGi1g1v0329100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peptidyl-prolyl cis-trans isomerase; TAIR: AT2G15790.1 peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase; Swiss-Prot: sp|Q9C566|CYP40_ARATH Peptidyl-prolyl cis-trans isomerase CYP40; TrEMBL-Plants: tr|I3SXT9|I3SXT9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0329100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:78424411..78427837) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAAGAACAAGGTGCTTCTTGGACATCAGCATAGGTGAAGAGCTTGAAGGAAGGATATTGGTGGAGCTTTTCAACGA TGTTGTACCCAAAACTTGTGAGAATTTCAGAGCTCTCTGCACTGGAGAAAAAGGCATTGGTCCAAACACTGGTGTGCCTC TCCATTTCAAGGTTAACCATCATCCTCTATTTTCACTTTTTTCACTTTTTGGTCATGCCCACCATCTATTTGTATTAAGT TCTCCTTTCAGCTACCAAAGTTGATTCCTTTATGCTTTTTTAGGTCTTTTATTTATGATGTGATTTCTGCCCAAATTCAT GGATTCTGAAATGACTGGTGTTTTAATGAAAAGGGTGTTGTTTATTCTGTTACTGGCTTCGCTGTGCACTTTCAAAATGA AACCTTTGTATTTGGAGCATTGATTTTGTGTCTTGTTGCTTTATTTCAATGATCATAGGATCTGGATTTTGTAGTAATCC AAAATGTCTGTAGATACCTTCATTCTGAAAAAGACAGTTATGCCCCCTTCATTCTTCTACTCTGTAGATACTTTTTTTTT TTGCTACAAGAGGAAAGCATCTGTAGATGCTTTTTGATCACTCACTTTTGTTATATACCCGTATTCTTGCCAAATAGATT GTACAACTTGTATCAATGTTACTACTAGGATTTCTGTATTTTTCAATGTAAAAGTAAAATTTCATACGTTATTTGTATTT GATACCGAGCTATCAATCACTATAGCCCGCCCGACCTAGAGGATGGGGGACAAGAAGCATTACATGGCTTAGGAGGACAA CATGGCCTAGTCATATATGTGGAAGCCTATGATCCAGAGAAACTATAACCGCCAAAATTAAATAGTCGTCTATAACCCTC CAATTAATTGATATACCAATGATTGTGAAACATTCAATAACTCAAGATGCAACCTCAGACCTATTTAAAACTTAGGGGAA CTAGAGTTCCAGCATACTCACTCTAATGCCATTCCTCGACCTGCTTGGTATTCTGATCAGCTGAGCTTGGGAGTTTGGAG AAAACAACTGCGAATTATAATATCCCCAGAAATATGGCAACTTTCTGATAGTCTAGAATTTGGTTTTTAAAATGTTAGAG TCTATTGTCTGAGAATATAATCCCAGCAATGCAGATGGGGAAGGAAAAAAAGAAGTTAACAACAGATATCAGTAGCAGGG AATATTATATAGTAGTAGTTTAAACTCTGTAATTCATGTCATACCATGAGTTGACATTAGCTTCCTTGTATAAGACGTGT TCTTTGTTTATCTTGATTAAAGCCTGAAACAATTAGGGAACTATTCTTTTGGTTTCTATTCTAAACTTGCTGCTTAGTAC TTTCCTGTGACATGTGATTAACTGGATAGAACTTTACTCAAGCATCTATTATTTTGCTGGCTCTGTCGTGCTATGTTTTT TTGGATGCAGCTCTGAATCTGTTGGCTTTGGTACTGAGTGCAGTTTAGCGTAACATCAAATGATTGCTAATTATCATGCA TGCTTCCTGGGTTCATGATAATTATATATTTGGATATGGTGATCAATAACTCTCATCTATACTCTATAGGAGCGCTTTTG AATACACTCTCAATGATTGGTCTATTATTTAAAATGCCGATACACTTGTAATATGGAGATTAGGTCTCACGGTGTGAATA CCAACTTGTTATTTTCTTTATGTTACTTCAAGGTTAACTATTGAATTCACTTTATAATCTGTTGTATTTTCAGGGATCTT GCTTTCATCGTGTTATTAAAGGCTTTATGATCCAAGGAGGCGATATATCTGCTGGAGATGGTACAGGAGGAGAATCTATA TATGGACTTAAGTTTGAAGATGAAAATTTTGAGATGAAGCATGAAAGGAAAGGGATGTTATCAATGGCAAACTCTGGTCC TGATACAAATGGGTCTCAATTTTTTATTAGCACTACCCGAACGTCTCATCTAGATGGTAAGCATGTTGTGTTTGGGAAAA TAGTCAAAGGAATGGGAGTGGTCCGTTCAATTGAGCATGTTACGATCGATGGAGACCGTCCCGTTGTTGATGTTAAAATT GTGGATTGTGGAGAAATTCCTGACGGAGAAGATGATGGGACATCTAACTTTTTCAAAGATGGTGATACTTATCCTGATTG GCCAGCAGACCTTGATGAGAGCCCTGATGAACTGGACTGGTGGATGAAATCTGTTGACTCAATTAAATCTTTTGGCAATG AGCATTTCAAGGTATTGGTGCTTCCCCATAGTCTATCTCACCATGATTTTGACATATTATTTAATACTTTGAAAGGAGCT ATATTTTTCTGAGGAGAATAAAAGAAATATTCCTGTTCTGCCAATTAATAGTGGTTCAGTGCTCATTACTGCTGCAGTCA TCCCATTAGCAAATAAAACTAATTATTTTTGTCTGATAGAAACAAGACTACAAAATGGCTCTAAGGAAGTATCGTAAGGC TTTACGCTACCTGGATATTTGTTGGGAGAAAGACGACATTGATGAAGGTATGCGGCAGCTTGTTAGTATTTATTTCATTT AACTTATTTACTGTGCAATAGTGATTATACTACAATTGCACTTGACTTAACATGGTGTATTAATGATGCATTTGCAGAGA AAAGTTCGAGTATGAGGAAAACTAAGTCTCAGGTTTTTACAAACAGCTCTGTAAGTTGGAAGTTACTGTGTTGTATTATA GTGTTGCAGCTAACTTAACTTATGTTACCTTTGCTTTTATATTCCTTCTGTCCTGTTGCCATTCTGCATATATTAACTTC TTTTTCTTTTTCCTACTCTACTATTATGTTATGTCCTATTTTCCAGGCTTGTAAGTTGAAATTGGGAGATCTTAAAGGAG CATTATTGGATACAGAATTTGCAATCCGTGACGGAGACAACAATGCCAAAGCTTTGTTCCGGCAAGGGCAGGTTGGTATC ACGATTGAAGAGCTTACTTTGGGCTTCTTGTTGCTGGTATTTAATGTATCCTCATTTTTTTTCTGATATCTACTTTACTT CCAATTTATCAGACATACATGGCACTCCATGACATTGATGCTGCAGTTGAAAGCTTTAAGAAGGCACTAACCTTGGAGCC TAATGATGGTAAATCGTCAATATATTTTGGATCAGGCGCTTGTCACACACTATCCTGTGCTATAATTGCTGGGATGTATT AACTTCATAATTTATTAGTCAGATTTGAGAGTCAGATCCCTTTATATATAGATATATAAATGCACAAACATGCATAAAAG ATGGGATAGCCATTTTCATGATACAAGCTGAAAAATAATATATGAATGGTAGTAATAACTTAAATATTAATATTAATTTG GATTGTGAAGAAATCTGAGAGTCTGGGATGGGCAGGAAGGTAATTTGGAGAGATATTGAACTTAAGG
CDS sequence (LotjaGi1g1v0329100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGAACAAGGTGCTTCTTGGACATCAGCATAGGTGAAGAGCTTGAAGGAAGGATATTGGTGGAGCTTTTCAACGA TGTTGTACCCAAAACTTGTGAGAATTTCAGAGCTCTCTGCACTGGAGAAAAAGGCATTGGTCCAAACACTGGTGTGCCTC TCCATTTCAAGGGATCTTGCTTTCATCGTGTTATTAAAGGCTTTATGATCCAAGGAGGCGATATATCTGCTGGAGATGGT ACAGGAGGAGAATCTATATATGGACTTAAGTTTGAAGATGAAAATTTTGAGATGAAGCATGAAAGGAAAGGGATGTTATC AATGGCAAACTCTGGTCCTGATACAAATGGGTCTCAATTTTTTATTAGCACTACCCGAACGTCTCATCTAGATGGTAAGC ATGTTGTGTTTGGGAAAATAGTCAAAGGAATGGGAGTGGTCCGTTCAATTGAGCATGTTACGATCGATGGAGACCGTCCC GTTGTTGATGTTAAAATTGTGGATTGTGGAGAAATTCCTGACGGAGAAGATGATGGGACATCTAACTTTTTCAAAGATGG TGATACTTATCCTGATTGGCCAGCAGACCTTGATGAGAGCCCTGATGAACTGGACTGGTGGATGAAATCTGTTGACTCAA TTAAATCTTTTGGCAATGAGCATTTCAAGAAACAAGACTACAAAATGGCTCTAAGGAAGTATCGTAAGGCTTTACGCTAC CTGGATATTTGTTGGGAGAAAGACGACATTGATGAAGAGAAAAGTTCGAGTATGAGGAAAACTAAGTCTCAGGTTTTTAC AAACAGCTCTGCTTGTAAGTTGAAATTGGGAGATCTTAAAGGAGCATTATTGGATACAGAATTTGCAATCCGTGACGGAG ACAACAATGCCAAAGCTTTGTTCCGGCAAGGGCAGACATACATGGCACTCCATGACATTGATGCTGCAGTTGAAAGCTTT AAGAAGGCACTAACCTTGGAGCCTAATGATGATGGGATAAAATCTGAGAGTCTGGGATGGGCAGGAAGGTAA
Protein sequence (LotjaGi1g1v0329100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRTRCFLDISIGEELEGRILVELFNDVVPKTCENFRALCTGEKGIGPNTGVPLHFKGSCFHRVIKGFMIQGGDISAGDG TGGESIYGLKFEDENFEMKHERKGMLSMANSGPDTNGSQFFISTTRTSHLDGKHVVFGKIVKGMGVVRSIEHVTIDGDRP VVDVKIVDCGEIPDGEDDGTSNFFKDGDTYPDWPADLDESPDELDWWMKSVDSIKSFGNEHFKKQDYKMALRKYRKALRY LDICWEKDDIDEEKSSSMRKTKSQVFTNSSACKLKLGDLKGALLDTEFAIRDGDNNAKALFRQGQTYMALHDIDAAVESF KKALTLEPNDDGIKSESLGWAGR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 336 | 336 | 6.8E-175 | – | |
| PANTHER | 1 | 336 | 336 | 6.8E-175 | – | |
| Gene3D | 1 | 172 | 172 | 1.1E-82 | ||
| SUPERFAMILY | 3 | 177 | 175 | 1.07E-73 | ||
| CDD | 5 | 170 | 166 | 4.10155E-101 | – | |
| ProSiteProfiles | 7 | 171 | 165 | 43.42 | ||
| Pfam | 8 | 170 | 163 | 7.9E-50 | ||
| PRINTS | 24 | 39 | 16 | 9.8E-37 | ||
| ProSitePatterns | 56 | 73 | 18 | - | ||
| PRINTS | 61 | 73 | 13 | 9.8E-37 | ||
| PRINTS | 104 | 119 | 16 | 9.8E-37 | ||
| PRINTS | 119 | 131 | 13 | 9.8E-37 | ||
| PRINTS | 132 | 147 | 16 | 9.8E-37 | ||
| Gene3D | 207 | 340 | 134 | 4.0E-33 | ||
| SUPERFAMILY | 208 | 331 | 124 | 3.24E-24 | ||
| ProSiteProfiles | 211 | 244 | 34 | 6.844 | ||
| SMART | 211 | 244 | 34 | 2.9 | ||
| ProSiteProfiles | 211 | 244 | 34 | 6.802 | ||
| ProSiteProfiles | 263 | 330 | 68 | 15.796 | ||
| ProSiteProfiles | 297 | 330 | 34 | 13.806 | ||
| SMART | 297 | 330 | 34 | 1.3E-7 | ||
| Pfam | 297 | 330 | 34 | 3.2E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein peptidyl-prolyl isomerization | The modification of a protein by cis-trans isomerization of a proline residue. | ||
| Molecular function | Peptidyl-prolyl cis-trans isomerase activity | Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. |
Expression pattern of LotjaGi1g1v0329100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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