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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0336400 |
| Transcript ID | LotjaGi1g1v0336400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SWI/SNF complex subunit SWI3A; TAIR: AT2G47620.1 SWITCH/sucrose nonfermenting 3A; Swiss-Prot: sp|Q8W475|SWI3A_ARATH SWI/SNF complex subunit SWI3A; TrEMBL-Plants: tr|G7J3D7|G7J3D7_MEDTR SWI/SNF complex protein; Found in the gene: LotjaGi1g1v0336400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:79598271..79604703) extracted from Lotus japonicus Gifu genome v1.2.
ACAAAACGTTGTGGTTTGAAAAAAAAATAAAAAGCGGCGCACCACCGGCGATCCATGGAAGTCAAATACGTGGTGGTGGT TTATGTTATAGAGTTATAATTAGTTCGCAGCACACTTCCACCACCACCACCGGCGGATCCATGGAAGTCCTGAAAGACCC GAATTCAAACCCGGGTCGGACCGACGATTCCGAATCTGAGCTCGAACTCTACACTATTCCAAGCTCTTCCAGTAAGCACT CTCTTCTCTCTCTCTCTGAACCCTAATTTCACCATTCCCGAAAATCTCTAACCGTCGTCGTTTTCGCAGAATGGTTCGCG TGGGACGAGATTCACGAAACGGAGAGAACAGCGTTGAAGGAGTTCTTCGATGGAACCTCGATTTCAAGAACGCCCAAGGT ATACAAAGAGTACAGGGATTTCGTGATCAACAAGTACAGGGAAGATCCTTCAAGGAAGCTCACGTTTACCGAGGTGCGGA AATCGCTGGTGGGCGATGTCACGCTCCTCCGCAAGGTTTTCCTCTTCTTGGAGAGCTGCGGTTTGATCAACTACGGCGTT GGGGAGGCGGAGAAGGAGGAGGAGAGGGAGGATGAGGAGGAGGGGGAGGGGGAGAGGTGTAAGGTTAGGGTTGAGGAAGG AGCGCCTAATGGGATCCGTGTGGTGGCTACGCCGAATTCGTTGAAGCCTCTTTCGGCGCCTCGCAATGCGAAGAGTGGTG GTGGTGGTGGTGGTAGTGTGAGTGGTGGTGCTGGGGTTAAGTTGCCGCCGCTGGCGTCGTTCGCGGATGTTTATGGCGAT TTAATGAGTGCTAAGGAGTTGAATTGTGGGATTTGCGGTGATAAGTGTGGTTTTGAACATTACAGAAGCACCAAGGTTAT TTTCTTGTTCGATTTAATTTGAATTTTCTACATGTTATCATTATATTCACATTGCTCTTAGTTATGTGCATGGTGTAGTT ATTATGTTTTATAGCCTCTTTTAATATTCTTCTGCACTGCACAAGTAACATATGACAGAAGGATTAGTTTATTAATAAAG GATAGATATCTATTGGAGATGGAAATTGGTTACTTGGGTGTAGCATTGGTAGGGATTTTGGTTGAGAATAGGAAGTTGTG GTAATGATTTCTCATCTCACATCTTGTTTCTGGTTGTGAGTAATTAGCAGGTATCGTGAGTAAATGCTTAGCATTGGGTA TGATTAGGGGCTGGAAAGGGAAAGAGTCACGAGAAAATGGAAGCGAAAGGGAGAGGGTGTTGATGTATAAATTATTCCAA ATTGGGTGAACTTAATGTTTATAACGGTGAATAAGGGTGGGGTGCGGAGTAGGGCATTGCTTGGGTACCAATTAAAATGG GAGGGTTTTTTTTCGCACGCTTCGTGTGACTAATGTATTAAGATGGAGTTTTTAAATAATAAATCTTTTGTGAAATACAT TATGAAATCACAAAAAAAAAGACCCAAGTTCTATTTTGAGATTTTGAAAACATATTAAGGCCCCGTTTGGATAAACAGCT TAATTAAGCGCTTATGGTCATAAGCGCTTATGACATAAGCGCTTATTCATAAGCTATTTTTAAAAATTTATTGAAATAAA TTAAAAATAAGCTGTGTATAAGCATAAGCTGTTTTTCATAAGCTATCCTGAGTAGCTTATGAAAATAAGCTGAAAATAGC TTATAGCAGACCATAAGCTGTTTGCATAAGCTCTCCCAAACACTGGCATAAGAGCTTATGCTGTCAGATAAGCTCAAATA AGCTCTTCCAAACTGGGCCTATAACCACTTAAATAGAATAAGATTAATCCGGCATACTAATACACTAATCGGGATTTTAG TGGGCCATACCTCTCTAGGCTTTGTTTTTGGGTGGGGAGGCTTATGAGAAGCCCTCCATCGTTTGCGAGTTATTAAAAAA TGGGGGAAGGGTTTGGATCTTTGGGGTGTTTCGGAAAGCCCTCTAAAACCCCCATCCAGTTGTTCTTATGAGTTCCCCCA AATTGTGGATTTTTGAACTTCCAATCAAGGGGATGAGTTACCCTCCCTTGCTCTTCCCTCACCTATAAACTCCAAAACAA ACCTGAAAGGTATCAAAACCCTCTAATTTCAATGGGTACTGATGAATTTTTTTTTCAGAATATTTTATTATAAATTTATT ATCCCTTGTTTAAAAAAACCGCAACGAGATTTTTCCCTTCCATCTCTCCCATCCAAACATGCCCTTAGGATCTTTTGGTT GAGTAGGTGAGAAATTAGATGCTAAAAATCTTGGAATAAAAATAAACTCACACTTGCTTGGTGCAGCAAAAATATAAAAA ATAGAATATAGAAATATCAACTGATTTTCTTTGTGCTATCACTCTACTTGAAATTTGAGAACCATTTTCACACAACGCTC TTTTTTTCTTACATCTAGTAAAGCCACGGCATGTGATATCTCTCACATAACTTTGCAACACATTTTAATTCTGTTGATCT GTCCAGCTTTCCGAATAGTGCTTCTTCTCATCCTTTTGCTTCCCGTTTTTTATAACAAGAGTTCACTGATTTTATTTACC TCCCTGATGTTCCCTGAACGTGTGCTGACAGAGCGTGCTGACAGAGCGTGTTTGAAATTAAATAGATTTTTGCAGTATTT TTTCTGCCTCTTCAGGCAAAGTTTATCACATGTCGTTAATCTTTCTTTTTGCAGTTTCACTTATATTCTGATACTAATAT TGATTTTAGTTCTTCTATTGTTTAAATAACATGGCAGGACAATTTCACTATTTGTATGAAATGTTTCAAAAATGGGAATT ATGGGGAGAAAAGGTCTGTGGAGGATTTCATATTAAACGAGTCAAACGAAAATAGTGTCAAACAGAGCACTGTCTGGACT GAGGGAGAAACTCTTCTCCTTTTAGAATCTGTTTTGAAGCATGGAGATGACTGGGAACTCGTTGCTCAAAGTGTTCAAAC CAAGACTAAACTTGATTGTATTTCAAAACTCATTGAGCTGCCTTTTGGGGAGCTCATGTTAGGCTCTGCTCACAGAAATG ACAACATTAATATTGCTAATGGCATTGTCAATAATGCAATACAAGTTCAGTCATCTTCTTCTGATCATCAAGAAACCTCA AAGACACAGAATCAAACTCCTGAGCTTACAAGTGAAAAAGAGCCGAACGGAGATGCTGTGAATGAAAGTCCCTCAAAAAG ACAGCGTGTTGCTGCCCTTTCCGAGTCCAGCAGTTCACTAATGAAGCAGGTAAGAGATAATCTTGAGTTTTATGTTCCTA TGTGATGCTTATAATTTCTGAATTGGGTTGCATTTCCCTTGTTCTTGTGGCGTTTTATCTTTAGTGTAAAAGTTTTGAAA GACTCATTTTTATGTTGGTGCTTCTTTGGTTACGGCTGCTCTAACATATATTGACCTGGGAAAAAGAACATTTGAATATT GATATCATTTGGATTTCATTCATTTTAATACTTACATTTAGTTGGTTATAATCTTTTTCATCATTTCTTTAACGTTGGAA AATAAGGTGTGTCTGTGAATCAATTATTTGCTTTCACCTGTTTTGGGATGACCATGAGTCAATGGTGTCTTGAATCAGGT GGGTTTGATTTCTACTTCGGTTGACCCTCACATCACAGCTGCTGCCGCTGATGCTGCTATTACAGCACTCTGTGATGAAA ACTTGTGTCCAAGGGAGATATTTGATGTTGAAGAGGACTATGCTTCCAGTGCAAACTCTCTAATTAGTGATTCAGAAAGG TGATCTACAGTATAAACCGACCAGTAGTGTACTTTTATTTATCCTTCAGATTTTGCTAGGTGATAACTTTTAAATTGAGC GGCTTTATATAATCCTTATACTTGTTTACTTTCATTTGTCTGTGTCAGAGCCCATGAGGTTGAAGGTTTAGAGATGGATA GGTCCACTCAGGCAGGTAAAATTCTAATTGTATGTGCATGAAGATGATATTTTGATTTTCTTTTGACAAACCCTATTACT TGAATACTTGTATATTTGAATCTCTTAAAGTTAATTACTTTATATACATGGAACAAAAAATAGTTGGGCTCCCTCAAGTT AAGTTGTTAAATTATTCTCGGGCATTACTTTTGTTCCTAAATTTTGCCTGTTACACTTCTCAATACTAATGCAAGATCAA TTGATCACTAAAATAATGGTGCAAGTAGGTGGATATTGTATTGGAAACAATCTCATGGAGAGAAATAGTTATTAGATGGT GAGTTCATTTGCCTTGTTGCAAGAAAGTTTTGGTTTGTACCTTATTATGGTATGATTCTTGAACGCAGCGGATGGTAAAG GTTCCTTACTTCAAATGAATTAGAAACCTTAAGGATAAAGAGAACTGTTGCGGAAGTGGCATGGGGAGGGGACAAAATCA AAATAATCTGATAGGGATTAGGGAGAGGCTGGCTCTTGAACACCAGTGTTTGTATAATTATTCCATAGTATAATTCTGTT CCTATCATAATCAAGCCCTGAAGAAGATACTAATGAAGAAGAATCCAAAGGCATGTGCTAATCAACAACTTGATCATTCC TTATTTTGACTTATCTTTACCCTTTAACAAGGGGTAATTCATGGGCACCGTTTTACATTTTTCACGATCAAATTTATTAT GAAAAAGGTTGTGAAGTTATAACATGGAAGATTGATTTCTCGCAATTAATATGATGATCTTGAAGATTTGGTATGGCTCC TCCAATCTTCACATTTTATTTCGTGTACCACGCTGGTCCTTTGCAGATACTTGATTTGAGGATTCCTCGTAACGTGAGAG ATGGATTACTTTATTTGTTCTTTAAATTAACAACAGCATGCGTGTATGGTTCCTTATTATTTGTGCATCTTGTGCTAATA TATATGCAACTATACTATGTTGGTTATGAAGTGTTGCTTCATGTCACCTTTAATCTGAGCTTAATCTCACAGAAAAAGAT GACAGAGGCCCAAAGGATGACATACCATTGCCCCTGCGCTTAAGAGCTGGCATTGCAACTGCTCTTGGAGCTGCTGCTGC TAGAGCTAAGTTAATGGCGGACCAGGAAGACAGAGAGATTGAACATTTAGTGGCAACTATAATTGAAGCACAGGTTGTTA GCTCATGATTTTATCTATCTGCAATTCCTGCCACTATTATAATTTCTCTGGTCAGGTATCAATCTTGGGGACTAACTAAT TTGTTTTTGCTTATTTGTTTACTAGATTGGTAAATTGCAACACAAGGTTAAACATTTTGACGAGCTGGAGTTGTTGATGA AAAAGGAACATGCTGAAATAGAAGAGCTAAAAGATTCTATCTTGACTGAGCGGATTGATGTGCTGCAGAAGACATTTAGA TCTGGAATCACTAGATGGAAGGATTATTCTTACGTAAAATCTTAGACTGGTTTGTAATTTTTTATGCATTTGTATAGTCT TAGTGCTCTATGGCGCGTGATTGGAGCATCATTTTTTAATTTTCTAAAAGCACTCCAGTAATCAGCTCACTGCTTACCTT TTAGATACTTTCAATTTCTTGGTTAGGAATTTAAGTTTTACATATAACTTAATTTGCAAAAAAATTGAACTGATTTAGGT ATAAAAAGTTGTCTATAATCACGCTGGGGGGCAGAGTAAACATTCGCTTGCCCTTTAATCAATGAGGTTTTGAGTTCAGA CATCCTAAGTCTTTGATTGTTGTAATGGTCTACGTTATCAACTATTTATAGGCATAAACCTAACTTGCTACCATTTCATT TAAGATTCAGAAGTGTTTCTATATGATATTGTAAGTCGTTTTGGTGTTCCAAGATCTGTTGCGATGAACACCAGTACCTG ATGTGTAGATAAAGGATTCCAAGGTCTCCTGGAAGCATTGAAGATAAAGCAGCATTTCCCATATGTGGATCACTCTTAGA TGAACGGACAAGGTGAATCAATCAATTGGTATTAGTGCTGGCGCCAAATTTTAACATCAAATTGACAATATACGCCAAAT TGACAATTTCTTGTAGTGATAATCTACCATATATTCCTTGTTTTCCTTCAAGAGATTTCACTACAATAGACATAAAGGGC GCGTTTTGGGACTTCTAATAATGCAAGACTCACAAGACCCATACCAGATCTCACTCTCTTGAATCAGATCGACTCAATGT TCTTTTATCATACAACTTATCAGTCAGGTATGAATATGTCACTAGATCTGATGCCTATATATTTGGAGTCCGATATTGAT GTGCCAAATAGCTTGCCATGTTGTAATAATGAAAGTTGAATAATTTGTGTAAAGTCATTATCACGTGATGAGACATCTAA ATTAGTTTGTCATCATGTAATAATGAGTGTTGAAAAAAGTGTGCAAGTCAGTCAATATTGTACTGTAACACAAGTCAAAG TTATGTTAATGTCATTTTTAATGGTGATGCAAA
CDS sequence (LotjaGi1g1v0336400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGTCCTGAAAGACCCGAATTCAAACCCGGGTCGGACCGACGATTCCGAATCTGAGCTCGAACTCTACACTATTCC AAGCTCTTCCAAATGGTTCGCGTGGGACGAGATTCACGAAACGGAGAGAACAGCGTTGAAGGAGTTCTTCGATGGAACCT CGATTTCAAGAACGCCCAAGGTATACAAAGAGTACAGGGATTTCGTGATCAACAAGTACAGGGAAGATCCTTCAAGGAAG CTCACGTTTACCGAGGTGCGGAAATCGCTGGTGGGCGATGTCACGCTCCTCCGCAAGGTTTTCCTCTTCTTGGAGAGCTG CGGTTTGATCAACTACGGCGTTGGGGAGGCGGAGAAGGAGGAGGAGAGGGAGGATGAGGAGGAGGGGGAGGGGGAGAGGT GTAAGGTTAGGGTTGAGGAAGGAGCGCCTAATGGGATCCGTGTGGTGGCTACGCCGAATTCGTTGAAGCCTCTTTCGGCG CCTCGCAATGCGAAGAGTGGTGGTGGTGGTGGTGGTAGTGTGAGTGGTGGTGCTGGGGTTAAGTTGCCGCCGCTGGCGTC GTTCGCGGATGTTTATGGCGATTTAATGAGTGCTAAGGAGTTGAATTGTGGGATTTGCGGTGATAAGTGTGGTTTTGAAC ATTACAGAAGCACCAAGGACAATTTCACTATTTGTATGAAATGTTTCAAAAATGGGAATTATGGGGAGAAAAGGTCTGTG GAGGATTTCATATTAAACGAGTCAAACGAAAATAGTGTCAAACAGAGCACTGTCTGGACTGAGGGAGAAACTCTTCTCCT TTTAGAATCTGTTTTGAAGCATGGAGATGACTGGGAACTCGTTGCTCAAAGTGTTCAAACCAAGACTAAACTTGATTGTA TTTCAAAACTCATTGAGCTGCCTTTTGGGGAGCTCATGTTAGGCTCTGCTCACAGAAATGACAACATTAATATTGCTAAT GGCATTGTCAATAATGCAATACAAGTTCAGTCATCTTCTTCTGATCATCAAGAAACCTCAAAGACACAGAATCAAACTCC TGAGCTTACAAGTGAAAAAGAGCCGAACGGAGATGCTGTGAATGAAAGTCCCTCAAAAAGACAGCGTGTTGCTGCCCTTT CCGAGTCCAGCAGTTCACTAATGAAGCAGGTGGGTTTGATTTCTACTTCGGTTGACCCTCACATCACAGCTGCTGCCGCT GATGCTGCTATTACAGCACTCTGTGATGAAAACTTGTGTCCAAGGGAGATATTTGATGTTGAAGAGGACTATGCTTCCAG TGCAAACTCTCTAATTAGTGATTCAGAAAGAGCCCATGAGGTTGAAGGTTTAGAGATGGATAGGTCCACTCAGGCAGAAA AAGATGACAGAGGCCCAAAGGATGACATACCATTGCCCCTGCGCTTAAGAGCTGGCATTGCAACTGCTCTTGGAGCTGCT GCTGCTAGAGCTAAGTTAATGGCGGACCAGGAAGACAGAGAGATTGAACATTTAGTGGCAACTATAATTGAAGCACAGAT TGGTAAATTGCAACACAAGGTTAAACATTTTGACGAGCTGGAGTTGTTGATGAAAAAGGAACATGCTGAAATAGAAGAGC TAAAAGATTCTATCTTGACTGAGCGGATTGATGTGCTGCAGAAGACATTTAGATCTGGAATCACTAGATGGAAGGATTAT TCTTACGTAAAATCTTAG
Protein sequence (LotjaGi1g1v0336400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVLKDPNSNPGRTDDSESELELYTIPSSSKWFAWDEIHETERTALKEFFDGTSISRTPKVYKEYRDFVINKYREDPSRK LTFTEVRKSLVGDVTLLRKVFLFLESCGLINYGVGEAEKEEEREDEEEGEGERCKVRVEEGAPNGIRVVATPNSLKPLSA PRNAKSGGGGGGSVSGGAGVKLPPLASFADVYGDLMSAKELNCGICGDKCGFEHYRSTKDNFTICMKCFKNGNYGEKRSV EDFILNESNENSVKQSTVWTEGETLLLLESVLKHGDDWELVAQSVQTKTKLDCISKLIELPFGELMLGSAHRNDNINIAN GIVNNAIQVQSSSSDHQETSKTQNQTPELTSEKEPNGDAVNESPSKRQRVAALSESSSSLMKQVGLISTSVDPHITAAAA DAAITALCDENLCPREIFDVEEDYASSANSLISDSERAHEVEGLEMDRSTQAEKDDRGPKDDIPLPLRLRAGIATALGAA AARAKLMADQEDREIEHLVATIIEAQIGKLQHKVKHFDELELLMKKEHAEIEELKDSILTERIDVLQKTFRSGITRWKDY SYVKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 18 | 550 | 533 | 3.8E-148 | – | |
| PANTHER | 18 | 550 | 533 | 3.8E-148 | – | |
| SUPERFAMILY | 21 | 117 | 97 | 7.26E-26 | ||
| ProSiteProfiles | 24 | 121 | 98 | 25.416 | ||
| Pfam | 27 | 112 | 86 | 1.3E-25 | ||
| Gene3D | 30 | 116 | 87 | 3.0E-31 | ||
| MobiDBLite | 155 | 176 | 22 | - | – | |
| Gene3D | 254 | 304 | 51 | 5.4E-14 | – | |
| ProSiteProfiles | 254 | 305 | 52 | 17.394 | ||
| SUPERFAMILY | 254 | 312 | 59 | 1.17E-8 | ||
| SMART | 255 | 303 | 49 | 2.6E-6 | ||
| Pfam | 258 | 298 | 41 | 1.4E-9 | ||
| CDD | 259 | 296 | 38 | 7.49125E-6 | ||
| MobiDBLite | 330 | 374 | 45 | - | – | |
| MobiDBLite | 429 | 463 | 35 | - | – | |
| MobiDBLite | 435 | 463 | 29 | - | – | |
| Pfam | 475 | 549 | 75 | 1.9E-19 | ||
| Coils | 517 | 537 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0336400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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