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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0372700 |
| Transcript ID | LotjaGi1g1v0372700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA cross-link repair 1A protein; TAIR: AT2G45700.1 sterile alpha motif (SAM) domain-containing protein; Swiss-Prot: sp|Q38961|SNM1_ARATH DNA cross-link repair protein SNM1; TrEMBL-Plants: tr|A0A151QYV3|A0A151QYV3_CAJCA DNA cross-link repair 1A protein; Found in the gene: LotjaGi1g1v0372700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:85102438..85108710) extracted from Lotus japonicus Gifu genome v1.2.
CGAAGGTGGATATGGCAATGATTCGCTTCCATTATGAATTCCATGAACTCCATCAAAGACAACACTGGGAGAGCTGGTGT AGATTAATCGCTTCACTTTTTGCTCAACGCAAGCATCGATCACATTCTGTGTTCCTTGTACATTGACGGAGTGATGCAGC TGGTAGCTGTTAATGGAAGAGTTCGGAGCAGCCATGTGGAACACAACTTCAGCTCCTTCAAAAGCTGCATTCAAACAAAA ACGGTGAAAACTATGCAGATATGGTTGTTTCGGTTTCGAGGTCGAAGAAGAAGAAGTAGAAGTAGAGGTTGTTGCCTTTC AAGACTTGAGCCTTGTCGCGAAGATCGACGGAGATATATTCAGCACGACCAGAGTGCAGAGCTTCACCGAGAACCCCCAA TTGCTCACCGGGTTCGAGCTCAATGGTGGGTCCCAAATCGGCGACGCGAACGCAGTACATGTTGTGCCGGATTAGCATCT CAACCAAATGCCTCGCCGCGAAACCTCGACCTCCGGTGACCACGCACCACCCGTCCTCCGCCGCAACCGCCTCCATATTC CGATCTCAGATTCACGAGCACTACACAAGACAAGAGTGTCACAAGTCACAACAACTAACAAGTGTTAGCGCCACCTGTCA CTTTCTTTTTTTTACAAAACAAAGTTTTATTGGGCCTTATGGGCCGGGCTTTCTGCAAGCCCATGATTCAGGACGCGAAA ACACACAACCTAACCTTTCACTTTCCCTCCAAAAGTTTTGAAAATCGCGTTTGGATTTATCGATTTACAGAGAAGCTATG AGCTTCTTCTTCTCCGCAACCGCAACCACGATGAGTTTGGATATGGATCTTGCTCTGTTCGACGACGATGAATTCGAGAT TCCTCTTACGCAGACAGCAACCATTCACCGCCCATTGAAGAAACACAAACTCGAAACGACGGCGTTTGGTGGTAGTGGCA AGGAGAATGTTCCTCCAAACGCGTCCTCTTCTACTATTCACGACGACGGTTACGAAATTGAGAATTGCAGCTTGGATTTC ATTCCTTCTACTATAGATTCAGTTGGAACCGCTCTAACTGATTCTTCTTCTTCTTCTTCTTCTGCATCTGTATCTGCGTT TGTGATTTCGTCTCCGGTGAAGGTGAAAATGAAGGGGACTGCGTATTTTGGCAACTCGATTGAGTCGAAGCTGGTGGTTT CGAGAGCGAACGCGATTAATAATGCAGAAGCTGGTTCGGAGCTGAATTTGAGCGATGAGTTAGATGGCTCCGTTCGGTGT CCTCTCTGTGAGGTTGATATTTCCAACTTGACTGAGGAACAACGGCATCTTCACACCAATGATTGTCTTGATAGAGGAGA TGATGTAAGTTAAATGCATTTTCTTCATCAATGATTGTGACGTTCAAACTGTGTTCATGGTGATTGGAGATTGTGAACGT AATCATTAGAAGCTAATGCAATAACGGTTTTATGCAGGTTGCTGTTCGTGATGACAACGTGGATGCTCAGTTTGCGCCGA AAGTCTCTCGTGTAGTTGATTGGCTGCGTGATCTCGGTTTAGGGAAATATGAAGACGTTTTTGTTAGGGAAGAGGTTGAT TGGGACACCTTGCAGTGGCTCACAGAGGAGGTGAGCCTTTATCAGTTCATTTCATGCCATCAGTTTTTGGTTCATAGTTG TTGCTTGAACTTATTTGATTGCTCTTCTCTTTAACATTTTTGTAGGATCTCTTGAGCATGGGTGTCACTGCACTTGGCCC TAGAAAAAAGATTGTGCATGCCCTGTGTGAATTTAGAAAAGGAATTGCTGCTTCAAATGAAAAACCTGAGGATGCTCTGG CAGAGCCTAGAAGGAATAGAAACCAGAATGTCAAAATGCAGCCTCACAGACCTGAAAGGAAAGTTGATGGCACTAGTAAA CCAGCTGCAAACAAAAAAATTACTGAATATTTTCCAGGATTTGCTACTAATGGGAAGAAAGTTTCCACCGCTCCTGAAGA GCAACAAGAAATGAAAAGCAGTGGCTCCGTTTCTGGGCGTAACCACAAAGGAAAAAATTCGTCAACAAATAGAAAGCTTC GTGATGTTCCCAAATGGTGTAGCATAGAAGGAACACCTTTCCGAGTGGTAAATAGTATTCTAAATGATACATGTGTATTC CCTTGATGCATGCCATTAGTACTTTGAAATTATATTATGTCTAGAAGAAGAAAATGTTTGTAATGGTCTGAGAAATGTAA ACTCTGTCCTTGTTTACATTCACGTTGTGTTTTCAATGCACCATTACCATTTAAAGGGGATTTTTCATGTGTAGCGTGTG GTGACTGATTTAGGTATCCTATCCAGAACATATTTATTAGACTCTCCTTCTTGGATTACAATTCAAATTGAGCATACATG TCCATCAAATTTCTGTTAACCTGCTGATCTAGGAAAAGAAAATACAAGATAAGGAACAAAAAAAAAGCTTTATATATATA TCCAATATTCATCCGTAAAATAGCCACTAGATTATGAAGATTAGTATCTTATAAATTCATTTTATATATGCAGGATGCTT TCAAGTATCTCAGAGGAGATTGTTCTCACTGGTTTCTCACACATTTCCACTTGGACCGTAAGTCTGCTCCTGCATGTTAA CATTCAATATTTATCATCAATAGATTTTCAGCTGTGAAAAACTTTTTTCTTGCAGTGATTGGATCTGTGTGTGTGTAATA ACTAATATGTATATAAATTTAGATTGATTGTGGTTTTATATCCATATAAGCTGACACCACCTCGTATGAAAAACCTTGTT GGTTGGGGTGATAGTTGTTGTATGTCCATGAATTAGTTCAATCCGGTTAACCTCTAAAATTTAGTCAATTTAAGAATGAC ATTTTCACAGAATTTTAATTGCAGCTGGGAATTCAAGTTCTGGTTTTAAGATCTTTTCTTATGTATTTCATAGGCACGCG ATTGTTAGATCTAAATATTTTTGACACAGATCTCCGTCAAATGGGTTAGCTAATTAAATTTGAATGTTTTGGTGTGTTTT CTTTCATATTGGATGACTTTGTTCATACAATTTGGATATATAGTTACTAAGATTTATATCCACATTGATGGATCAGATAT ATGCATTTTCATGGACAATTGGCAACAAAGTAGTTTTGGTGCTTCTCTGATATAAGGAAGTGAGTTAAATGTGGCACATT GAAGTGTGGATTTCGATTTCCTCAGAACTATTTTTGGGTGCATCGATACCCATTCGCATATCCGTAAAATGTTAGAGTTT CAGATCACATGTTAAAACCTATTCGGAACTTAAAACTACAAAATAAATTAATAGTAGAGTTTCTTGTGTTTAGCTCCTTT TAAGCGGATTATTACAATCAGAGTCAAAGTTTTCCAATTTATGCCTTGGCTTATGGTTCTCATTGTGATCACAGATTATC AAGGTCTCACGAAGTCGTTCAATCATGGAAAGATATATTGCTCTTCTATTACAGCTAGACTTGTAAATATGAACATTGGG ATTCCATATGATAAGTTACATATTTTGCCTCTGAACCAAAAGGTTGAAATAGCTGGTATTGATGTGACTTGCTTGGATGC CAACCACTGTCCAGGTTCCATAATCATACTCTTTCAACCTCCGAATGGTAAGGTGTGCCTTGGATAGACTTACTAATGAG GTTAAATATTGTCTGCTAGCTATCCCTGATTATCATGGAATTGACTAGATATTTTCTGTCCATTTAGGCCGTACTCCACA CGGGTGATTTTCGGTTTAGTGATGAGTTAGCAATAAATCCTGTCCTGAGGATGTGTCCTGTTCATACTTTAATTCTTGAT ACAACATACTGCAACCCACAGGTGAGTCCATGTGTGAATAAATTGAGTTCTTTTTTTTTCAAGTATCTTGACTGTCTTAA GTTATTGTATTGGAACTATTGGCTTCTTTAAATATATACATTTTCATTGCAGTATGACTTTCCAAAACAAGAGGCAGTTA TACAATTTGTTATTGATGCCATTCAAGCAGAAGCTTTTAATCCCGGGACTCTTTTCCTGATTGGCAGTTATACAATTGGT AGAGTTCAATACAATACTTCTCTGGATATTATGTTACATACTAAACAGGTTTTAGTGGTTGGGTTTCTATGGTAGCATTG CCCAACTACCAGGAAACTAATGAGTGAAAATGAAGATGTTCACTTCTTTCTTTCCCCTTCTTATTTTTCCATTTTATGTT TTTATAGGAAAAGAAAGGCTATTCCTTGAGGTTGCTCGTTCGCTACGAAGAAAGGTTTACGTGAATGCAGCAAAGTTACG TCTTTTAAAATGTTTAGAATTTGAGGAGGAGGATATGCAGTGGTTTACTTTAAATGAACACGAAAGCAACATTCATGTGG CCCCTATGTGGACACTTGCAAGCCTCAAAAGATTGAAACATGTATCAAGTCAATATGCAGTGAGTGCCGCTGCCTGTTTT TCTAGCACACCCAATCTATGCTAACCTTGTCGTATTTTTTTTATGTAGATGGGGAACATATCTTGACGTACACATATAGT TACATTCATCTACCATACTATTTATATTCTACTTTGATCTGATATTTGTTTGATAACTGTTCCATTATCGAATAACATGG TAGTTGATAAACGAACCAGGGCTGCTACTTGGTCTACTTGCTCAGCAGTTTTACAGCTTTTGAACAGGCTATTCAATACT GAAATACATTTGTCTTTTAACTTATAGATTTACATTTCTAATTATTTGATGCGTTTTCTTTAATCAGAGTCGGTTCAGTC TTATAGTTGCTTTCTCTCCTACCGGTTGGACATTTGGCAAAGGTAAAAAGAAATCTCCTGGAAGAAGGTGGCAGAACGGT ACTATTATAAGGTGATACTTTAATGTCCTTTATTACTAAATTGTTTTATTTTTATTTTATACTAATGGATGAACTCTGGA ATCATAGCTAAATTAGATCCTTCAATTACATGTCTACATTCTCTTTCTACTTATGGTCCAATAGAGCATGTTTTAACTTT TAACAAAGCCCTGTACCTGTAGTAAGAAGAACAATTCATTCACTTTCCTTATATTTGTTAAACTATTAACTAATCGAACT TTTCCTTCTTTATCAGGTATGAGGTGCCTTACAGTGAGCATTGCAGCTTTACAGAACTCAAAGATTTTGTAAAACATATA TCTCCTGCTAACATTATACCAAGCGTGAATAATGATGGACCAGAATCTGCCAATGCAATGATTTCTCTCATGTCATCTTG ATTTGTTCACCAAAAGAGGTTAGGTCTACCATTGTAATATATTGTATAATGAATCTGAAATAAAGGGTTAATGATTTTGC CATCCCTTTTGTATTTAACTAAATCTTTTTTAATGCATTCGAGTTGTTTTAGATCAAGGTATCTTAGGCAGAAAAAGAAA GAAATTGATTACTTTTGCTGTAGAATATATGAAGATAAGGAAGTTGATGGATCAAATTTCTTACTATGGCCTCTAGTAAT AATTTGATTCTAATGGGTTGATGAAGGAAATACTTCATTTTCATTGATCATCAATAAACTGAATATACACACAAGTGTTC TTATATTAATAGAAGCAAATAACAGTTAACTAAAACTGATTGAATTAACAACCAGTAATATCTAACTTAAATAATGAACC AATTACCTAACTGATTAAGTTTACTGTAGTACTCCCCCTCAGGATGGAAGGAATATACTCTGGACTCCCATCTTGGACAA TAGAAGCTTGAAGATGTGAAGGCAAAGGTTTTACTTAACAAATCAGCTAATTGGTGGTGAGCACCAGTATGGAGGGAGAG AGTATACTCTGAGATAGAAAAATACCTTACTTGGATCTAGCAATCTCAAGCCCTACGGAATACTGCAACTTCCCAAAATC TCTGCTTAAAATAGGATTGCAGATTTGCAGTAACGTGTGGATTTGAGTCCGCAATGATAATATCATCTACGTCCACTATT ACGGGGGCAAAGAATGAGTAGTCACTCATTGATTAAATAAAGCCACACTGCAAAAGGGCTGGAGTGAAGGCCATGGATTG ATTTATGGAGTTTGCACTTTGCAGACCGATTTCTCCACTCATTTGAAAAATCTATTTTGATAGGTAAAGCCTTGCGTAGG TCCATATATTTATTAATCTGATAACTTCTCTCAATTTTCTGTTATAATTAAAGAACAGGAAAAACAATATCTATAGAACT GTTGTCCTGTGATTTATTCCTCCTAAAGTCTCA
CDS sequence (LotjaGi1g1v0372700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCTTCTTCTTCTCCGCAACCGCAACCACGATGAGTTTGGATATGGATCTTGCTCTGTTCGACGACGATGAATTCGA GATTCCTCTTACGCAGACAGCAACCATTCACCGCCCATTGAAGAAACACAAACTCGAAACGACGGCGTTTGGTGGTAGTG GCAAGGAGAATGTTCCTCCAAACGCGTCCTCTTCTACTATTCACGACGACGGTTACGAAATTGAGAATTGCAGCTTGGAT TTCATTCCTTCTACTATAGATTCAGTTGGAACCGCTCTAACTGATTCTTCTTCTTCTTCTTCTTCTGCATCTGTATCTGC GTTTGTGATTTCGTCTCCGGTGAAGGTGAAAATGAAGGGGACTGCGTATTTTGGCAACTCGATTGAGTCGAAGCTGGTGG TTTCGAGAGCGAACGCGATTAATAATGCAGAAGCTGGTTCGGAGCTGAATTTGAGCGATGAGTTAGATGGCTCCGTTCGG TGTCCTCTCTGTGAGGTTGATATTTCCAACTTGACTGAGGAACAACGGCATCTTCACACCAATGATTGTCTTGATAGAGG AGATGATGTTGCTGTTCGTGATGACAACGTGGATGCTCAGTTTGCGCCGAAAGTCTCTCGTGTAGTTGATTGGCTGCGTG ATCTCGGTTTAGGGAAATATGAAGACGTTTTTGTTAGGGAAGAGGTTGATTGGGACACCTTGCAGTGGCTCACAGAGGAG GATCTCTTGAGCATGGGTGTCACTGCACTTGGCCCTAGAAAAAAGATTGTGCATGCCCTGTGTGAATTTAGAAAAGGAAT TGCTGCTTCAAATGAAAAACCTGAGGATGCTCTGGCAGAGCCTAGAAGGAATAGAAACCAGAATGTCAAAATGCAGCCTC ACAGACCTGAAAGGAAAGTTGATGGCACTAGTAAACCAGCTGCAAACAAAAAAATTACTGAATATTTTCCAGGATTTGCT ACTAATGGGAAGAAAGTTTCCACCGCTCCTGAAGAGCAACAAGAAATGAAAAGCAGTGGCTCCGTTTCTGGGCGTAACCA CAAAGGAAAAAATTCGTCAACAAATAGAAAGCTTCGTGATGTTCCCAAATGGTGTAGCATAGAAGGAACACCTTTCCGAG TGGATGCTTTCAAGTATCTCAGAGGAGATTGTTCTCACTGGTTTCTCACACATTTCCACTTGGACCATTATCAAGGTCTC ACGAAGTCGTTCAATCATGGAAAGATATATTGCTCTTCTATTACAGCTAGACTTGTAAATATGAACATTGGGATTCCATA TGATAAGTTACATATTTTGCCTCTGAACCAAAAGGTTGAAATAGCTGGTATTGATGTGACTTGCTTGGATGCCAACCACT GTCCAGGTTCCATAATCATACTCTTTCAACCTCCGAATGGTAAGGCCGTACTCCACACGGGTGATTTTCGGTTTAGTGAT GAGTTAGCAATAAATCCTGTCCTGAGGATGTGTCCTGTTCATACTTTAATTCTTGATACAACATACTGCAACCCACAGTA TGACTTTCCAAAACAAGAGGCAGTTATACAATTTGTTATTGATGCCATTCAAGCAGAAGCTTTTAATCCCGGGACTCTTT TCCTGATTGGCAGTTATACAATTGGAAAAGAAAGGCTATTCCTTGAGGTTGCTCGTTCGCTACGAAGAAAGGTTTACGTG AATGCAGCAAAGTTACGTCTTTTAAAATGTTTAGAATTTGAGGAGGAGGATATGCAGTGGTTTACTTTAAATGAACACGA AAGCAACATTCATGTGGCCCCTATGTGGACACTTGCAAGCCTCAAAAGATTGAAACATGTATCAAGTCAATATGCAAGTC GGTTCAGTCTTATAGTTGCTTTCTCTCCTACCGGTTGGACATTTGGCAAAGGTAAAAAGAAATCTCCTGGAAGAAGGTGG CAGAACGGTACTATTATAAGGTATGAGGTGCCTTACAGTGAGCATTGCAGCTTTACAGAACTCAAAGATTTTGTAAAACA TATATCTCCTGCTAACATTATACCAAGCGTGAATAATGATGGACCAGAATCTGCCAATGCAATGATTTCTCTCATGTCAT CTTGA
Protein sequence (LotjaGi1g1v0372700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFFFSATATTMSLDMDLALFDDDEFEIPLTQTATIHRPLKKHKLETTAFGGSGKENVPPNASSSTIHDDGYEIENCSLD FIPSTIDSVGTALTDSSSSSSSASVSAFVISSPVKVKMKGTAYFGNSIESKLVVSRANAINNAEAGSELNLSDELDGSVR CPLCEVDISNLTEEQRHLHTNDCLDRGDDVAVRDDNVDAQFAPKVSRVVDWLRDLGLGKYEDVFVREEVDWDTLQWLTEE DLLSMGVTALGPRKKIVHALCEFRKGIAASNEKPEDALAEPRRNRNQNVKMQPHRPERKVDGTSKPAANKKITEYFPGFA TNGKKVSTAPEEQQEMKSSGSVSGRNHKGKNSSTNRKLRDVPKWCSIEGTPFRVDAFKYLRGDCSHWFLTHFHLDHYQGL TKSFNHGKIYCSSITARLVNMNIGIPYDKLHILPLNQKVEIAGIDVTCLDANHCPGSIIILFQPPNGKAVLHTGDFRFSD ELAINPVLRMCPVHTLILDTTYCNPQYDFPKQEAVIQFVIDAIQAEAFNPGTLFLIGSYTIGKERLFLEVARSLRRKVYV NAAKLRLLKCLEFEEEDMQWFTLNEHESNIHVAPMWTLASLKRLKHVSSQYASRFSLIVAFSPTGWTFGKGKKKSPGRRW QNGTIIRYEVPYSEHCSFTELKDFVKHISPANIIPSVNNDGPESANAMISLMSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 610 | 610 | - | – | |
| PANTHER | 129 | 693 | 565 | 5.5E-290 | – | |
| PANTHER | 129 | 693 | 565 | 5.5E-290 | – | |
| SMART | 201 | 266 | 66 | 1.8E-13 | ||
| ProSiteProfiles | 203 | 266 | 64 | 15.732 | ||
| Pfam | 204 | 260 | 57 | 1.5E-18 | ||
| SUPERFAMILY | 204 | 264 | 61 | 2.97E-17 | ||
| Gene3D | 205 | 277 | 73 | 1.2E-18 | ||
| CDD | 207 | 260 | 54 | 1.8928E-20 | – | |
| MobiDBLite | 271 | 307 | 37 | - | – | |
| MobiDBLite | 290 | 305 | 16 | - | – | |
| MobiDBLite | 323 | 357 | 35 | - | – | |
| MobiDBLite | 326 | 349 | 24 | - | – | |
| CDD | 353 | 505 | 153 | 1.14503E-77 | – | |
| Gene3D | 367 | 678 | 312 | 2.9E-108 | ||
| SUPERFAMILY | 371 | 676 | 306 | 3.28E-42 | ||
| Gene3D | 508 | 655 | 148 | 2.9E-108 | – | |
| Pfam | 577 | 680 | 104 | 1.0E-24 | ||
| Phobius | 611 | 629 | 19 | - | – | |
| Phobius | 630 | 694 | 65 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0372700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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