Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0379100 |
| Transcript ID | LotjaGi1g1v0379100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Two-component response regulator; TAIR: AT2G25180.1 response regulator 12; Swiss-Prot: sp|B8AEH1|ORR23_ORYSI Two-component response regulator ORR23; TrEMBL-Plants: tr|I1K8P7|I1K8P7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0379100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86001139..86005667) extracted from Lotus japonicus Gifu genome v1.2.
CTATCCACAACTTCTTTCTTCACAAACTCTCTTCCTTATTTTATCTATGACAAATAATGTGTTACTTTGACTTCCCTCCA CCCTCACTCTTCCCACACCCACAATGAGAGCATTGATATTGACAATTAATTTGATTTTTCAATACGTTAATTGATTGACA TTTAATAATATGATCCACATAATTTCTCTAGTCAATAGCAATCCATGGCCTAAATTCTTACTATTTCCTTTGTTGTTACG TTTTAGTCATCTATCACCTTAAATACATTAATGTTATGAATTTATTCCTACTTATTGTCTGATTTGATGAAAATCACAAC CTGCAACTTCATGCTATGATAAAAGGGCACAGTGGCAGCAAATCCTTTATCCAATATCCAAAATCACATTCTTTTGTTTC ATTGCTTTCTGCGTCTCGAGTGCACGAATCAGATCGTAGAGCAAAACCGGGACTTTAGATTTAGTGAGTAGGTGAGTATC TCTTTTCTTCTCAAATAATTTAGTAGAAGGAAGTAGATTACAGTCAGATTCCACCTTTTAGCTTAGTGCTTAGTGACTCA AAAAAAAAGACATCCACTTTCTTGCTTCTTCCTTTATTCTTAAGACCCTCATTTTATGTTTTCTGCTAAAAATATATTTG GTTGATGATTGCTTCAGTTTCCAGAAGAACAGAATGGAAGATCAGTTTCCCAAAGGAATGCGTGTTCTTGCCGTCGATGA TGACCCTACTTGCCTCTTCGTTTTGGAAACCCTGCTCCGAAGATGTCAATATCACGGTCCGTTTCTTCTTCTTCTTCTTA ACTTTTTCTGTTCAGAATGATACTTATCTTATGTATGGCTTGGGATTGCAGTAACTACGACAAGTCAAGCAAAAACAGCA TTGACGCTGTTGAGAGAAAACAAAGGCCAGTTTGACCTGGTAATCAGTGATGTGCACATGCCAGACATGGATGGATTTAA GCTTCTTGAACTTGTTGGACTTGAAATGGACCTTCCTGTCATAAGTAAGCAGATATGTTTTATATAATCTTCAAAACTTT AGATTTTTACCATTTCTTAATCATGGCCCTCATTGGTTGATTATGGGTATAGACGTATAGTTATTGATCAATATAGATTC AGGGGAAATTCAGATTTTTTTCAATAATCAGTTTTCTTACTATGCTCGTGTATTTTTACTCAAGTATATTATATTTACTG CTAGCATGTTTGGTTCAATGGCGAAATGTTCTAAGAGACAATTCTGATTAGAAGCTATGAGTCTTAGCTTTTGAGTAAAC GTGCCTTCGATTATATACAAATCATGAAACCAAACATGCTGTTAATAATGTTCTTAGTCCTACCAAAGAATTTGTTCAAG TTTCAAAATTGATTTTTTATAAGCATGAAGCTGTGACTTGCGAATAAACTCATTTAGGAAAGCTTTATTTTAAATTGTGA TGTATATTGAATGATTGTTTGGCAAACCTTTGATGGTATAAAATGTTTGATTTCAGTGCTTTCTGCAAATGGGGATACAA AGTTGGTGATGAAGGGGATTTCTCACGGGGCCTGCGATTATCTGCTGAAGCCTGTGAGAATGGAGGAGCTAAAGAACATT TGGCAGCATGTGATCAGGAGGAAGAAGTTTGATCCAAAGGAGAAGACCAAAACCAGCAACCTTGATAAACCAGCTTCTGA TAGTGGAAAGTTGACTAAAAAGAGGAAGGATCAAGATGAAGGTGCAGATGAGGAGCAAGAGAATGATCATGACGCTGAGG ATCCATCAAACCCGAAGAAGCCTCGGGTTGTTTGGTCTGTGGAGCTGCACGGCAAGTTCGTTGCTGCTGTTAATCAGCTA GGCATTGACAGTATGTTCTTTCCTCTGCCTACAACATACAAAACAATTGTTAATAGTTTTTATCAATTTCTCCAAGACCT TAATCAAATTCTTTCTCATTTTATATCATCAAAATATATTTGAATATCCTAGAGGTCAGAATTATCAATCTGATTTCAGA ATAATTTATAATATAGACAAGTGCCACTTTGAATAAATATCATGTCAAAATTATGACTCAAAATTTGTGTCTTATTGTGA AGTTCTTCATTACTGAATGGGTGTGGACCTCATGATGTTATTGTTTTGCTGGCAGAGGCTGTGCCTAAAAAGGTTCTTGA TTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCCAGCCATTTACAGGCACTGTTTCTTGCTCTCTTGACTTTTA GTTTAATATAACCTAAAACTTTTATTTCCCTGAATGTTTCTGGTTTATGAATTGGCTGCAGAAATATAGGCTTTATCTGA AAAGAATTAGCTCACTTAGCTGCATGGCAAGCCAACAGACTAGTATGATGGCGGCCTTAGGGAGTATTGATCGATCCTAT TTGAAAATGGGCTCTATGAGTGGGGTTGGACATTTGCAACCAGTAAATGGTCTTGGACAGTTTCATAATAATGCTTTCAA ATCCTTTTCACCTAGTGGAATAATTAGTAGATTGAACACTGCAGCTGGTCTGGATGTGCATGGATTTCAAACTTCCGGAG TACTTCAGTTGGGTCAATCACAATATCTAAACAATTTCAAAGATGATCAGCTTAATATCCAGCCAGCCACAGTTCCTGTT AATCCTAATCGTGTTCGAGGAATGTCAGTGACTATGGGGCTTGATCAATTGCAAGATAATATGGGTGTCATTCCTGTTCA AAACATGACCACTGATTTTGATAGGAGAACAACTACTTCACCCATTTCAAATAAACTCCCAGATCAAAGAGCAAGAATAA CCACTTCTGTCTCTCACACACCACTTTTGGGTAGCTTAAACAATGCCTTGATGTTGGAAACTCACCCTCAAGATAAACCA GGTGGTATAGGATATGAAAATTCATCCTCTGCAGGAGCCTTCCAACATTCAGAAATTGCTTTCTCTTTGCTGGATAAAGG TAGATATACTGATAATTGGTCAAGCGACGTGAAGTCATCTGCGATCATGACAAATTCTTACCCTCCAAGTGAGTGTTTTA GACAAACAGCTACACCTCCTTCTATCGATAACATGGCTTCTTTACCCTTGCAAGGAGTGAATTTTACAAATAAGCCTGGG CAGACAAACAGTAACGTTCCATTTCAAGGGTGGGATGACCACAATCAGAATGCTACTTACTATTCAAATGTTATTGATGG ATCAATAAGCTCTCCGACTACAGTTAATGAAGCTGTTGTTCCAGCAGGCCATACTCCTACTAACTCAACCATGCCCAAAA CCTTGGACTACAATTTTTGTGATCCCTTGCAAATGAAGCGTGATGGCTTCGTGGAGTTAACTGAAGACACCCCGTTGAAG CAACATCAGGGGAATATCATGAACCAGCAGAAGCCTCAAGAAAGTTGCTTCTCTAATAATTTTGGTTCACTGGAAGACTT GGTCTATTCAATGATGGCACAGGTAATAATATTTCTGTTATATAAAGAGGGTTTTCCCAAAGGTTTCTGTATGACTTCTT TTTTAACATATTTACTACAATCAGTCTTCAGATGCTTGATGACTTTAAACCATTTGAAGTTCTGATTCAAGTACCTGGTG TTGTATCTGGTTCAAAACTTTCACTTAGGTACCATAACAGCATATTTAGATCTTTTGAATCAGGTTGATGCCACCTCAAC CTTAATTTTCACGGATCTCGCACACTTTTTATTTATTTATATATTATTATGTCGCACTTGTTGTATGCCAATCTCCTTTG ATTAGTAAAAGTACAATCAGTAGCCTGATGGAGAGTGTTACTCATTCACTACATGTTGTTGTCATGCAGGAGCAACATAA GATGAAACTATTGGATGCGGACCTCATTTGTGATAATTACTGTGGTGGGATATCAATGTTACAGCAAGTTTGGGACAATA TATCAGCATCATGCTATCCTCGCTGATGAACTTTGTAGCATGATAAGTCTTCTACTAGTTTTCTGCAGGCTTTATCTTTT CCAGTTTTCTTTTTCCTGGGTGGTATCTAGATTTCTTCCTTTGAAGTGTTTGGTTTAGAGTTTTGTTGGAATTAGTTTGG TAGAATTGAGTTTGAAAAGTAGACCAAATCATTTTAATGTGGGCATTGATTTCATGTATGTTTGATTTTTTGTTGAATTT AATGTCGATCCACATTTGAGCCAAGGTGACAAAATCTTGTTTCTCAGTTGATGTGATGGGATGTATTTTTCTGTTTGCAT CAACATAAAAAAGGCAGGAAATAATGTGGAAACTACAAAACTCAAACAAGGTGTTCACTTTATTTTCTCTTTTTATTTTT ATTCTCTTTCTCTTCCTATTTCTCTCATTTTTCTATCACACTCTTCCCATCTGTCTTCTATTTTTATCAATCACATATAT TTTCGAAACCTTTTTGACACTTTCGAAGGGCTAAAATACAGAAAATGGGGGAAGTTCTGATTGTTTCAGAATATGAACGT TGTTCCATATTTGAAGCCCCTCCAAAATGTCTAAGAAGTTTCTTAAGAA
CDS sequence (LotjaGi1g1v0379100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGATCAGTTTCCCAAAGGAATGCGTGTTCTTGCCGTCGATGATGACCCTACTTGCCTCTTCGTTTTGGAAACCCT GCTCCGAAGATGTCAATATCACGTAACTACGACAAGTCAAGCAAAAACAGCATTGACGCTGTTGAGAGAAAACAAAGGCC AGTTTGACCTGGTAATCAGTGATGTGCACATGCCAGACATGGATGGATTTAAGCTTCTTGAACTTGTTGGACTTGAAATG GACCTTCCTGTCATAATGCTTTCTGCAAATGGGGATACAAAGTTGGTGATGAAGGGGATTTCTCACGGGGCCTGCGATTA TCTGCTGAAGCCTGTGAGAATGGAGGAGCTAAAGAACATTTGGCAGCATGTGATCAGGAGGAAGAAGTTTGATCCAAAGG AGAAGACCAAAACCAGCAACCTTGATAAACCAGCTTCTGATAGTGGAAAGTTGACTAAAAAGAGGAAGGATCAAGATGAA GGTGCAGATGAGGAGCAAGAGAATGATCATGACGCTGAGGATCCATCAAACCCGAAGAAGCCTCGGGTTGTTTGGTCTGT GGAGCTGCACGGCAAGTTCGTTGCTGCTGTTAATCAGCTAGGCATTGACAAGGCTGTGCCTAAAAAGGTTCTTGATTTGA TGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCCAGCCATTTACAGAAATATAGGCTTTATCTGAAAAGAATTAGCTCA CTTAGCTGCATGGCAAGCCAACAGACTAGTATGATGGCGGCCTTAGGGAGTATTGATCGATCCTATTTGAAAATGGGCTC TATGAGTGGGGTTGGACATTTGCAACCAGTAAATGGTCTTGGACAGTTTCATAATAATGCTTTCAAATCCTTTTCACCTA GTGGAATAATTAGTAGATTGAACACTGCAGCTGGTCTGGATGTGCATGGATTTCAAACTTCCGGAGTACTTCAGTTGGGT CAATCACAATATCTAAACAATTTCAAAGATGATCAGCTTAATATCCAGCCAGCCACAGTTCCTGTTAATCCTAATCGTGT TCGAGGAATGTCAGTGACTATGGGGCTTGATCAATTGCAAGATAATATGGGTGTCATTCCTGTTCAAAACATGACCACTG ATTTTGATAGGAGAACAACTACTTCACCCATTTCAAATAAACTCCCAGATCAAAGAGCAAGAATAACCACTTCTGTCTCT CACACACCACTTTTGGGTAGCTTAAACAATGCCTTGATGTTGGAAACTCACCCTCAAGATAAACCAGGTGGTATAGGATA TGAAAATTCATCCTCTGCAGGAGCCTTCCAACATTCAGAAATTGCTTTCTCTTTGCTGGATAAAGGTAGATATACTGATA ATTGGTCAAGCGACGTGAAGTCATCTGCGATCATGACAAATTCTTACCCTCCAAGTGAGTGTTTTAGACAAACAGCTACA CCTCCTTCTATCGATAACATGGCTTCTTTACCCTTGCAAGGAGTGAATTTTACAAATAAGCCTGGGCAGACAAACAGTAA CGTTCCATTTCAAGGGTGGGATGACCACAATCAGAATGCTACTTACTATTCAAATGTTATTGATGGATCAATAAGCTCTC CGACTACAGTTAATGAAGCTGTTGTTCCAGCAGGCCATACTCCTACTAACTCAACCATGCCCAAAACCTTGGACTACAAT TTTTGTGATCCCTTGCAAATGAAGCGTGATGGCTTCGTGGAGTTAACTGAAGACACCCCGTTGAAGCAACATCAGGGGAA TATCATGAACCAGCAGAAGCCTCAAGAAAGTTGCTTCTCTAATAATTTTGGTTCACTGGAAGACTTGGTCTATTCAATGA TGGCACAGGAGCAACATAAGATGAAACTATTGGATGCGGACCTCATTTGTGATAATTACTGTGGTGGGATATCAATGTTA CAGCAAGTTTGGGACAATATATCAGCATCATGCTATCCTCGCTGA
Protein sequence (LotjaGi1g1v0379100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDQFPKGMRVLAVDDDPTCLFVLETLLRRCQYHVTTTSQAKTALTLLRENKGQFDLVISDVHMPDMDGFKLLELVGLEM DLPVIMLSANGDTKLVMKGISHGACDYLLKPVRMEELKNIWQHVIRRKKFDPKEKTKTSNLDKPASDSGKLTKKRKDQDE GADEEQENDHDAEDPSNPKKPRVVWSVELHGKFVAAVNQLGIDKAVPKKVLDLMNVEKLTRENVASHLQKYRLYLKRISS LSCMASQQTSMMAALGSIDRSYLKMGSMSGVGHLQPVNGLGQFHNNAFKSFSPSGIISRLNTAAGLDVHGFQTSGVLQLG QSQYLNNFKDDQLNIQPATVPVNPNRVRGMSVTMGLDQLQDNMGVIPVQNMTTDFDRRTTTSPISNKLPDQRARITTSVS HTPLLGSLNNALMLETHPQDKPGGIGYENSSSAGAFQHSEIAFSLLDKGRYTDNWSSDVKSSAIMTNSYPPSECFRQTAT PPSIDNMASLPLQGVNFTNKPGQTNSNVPFQGWDDHNQNATYYSNVIDGSISSPTTVNEAVVPAGHTPTNSTMPKTLDYN FCDPLQMKRDGFVELTEDTPLKQHQGNIMNQQKPQESCFSNNFGSLEDLVYSMMAQEQHKMKLLDADLICDNYCGGISML QQVWDNISASCYPR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 636 | 636 | 6.5E-160 | ||
| Gene3D | 2 | 143 | 142 | 4.0E-35 | – | |
| PANTHER | 3 | 587 | 585 | 9.1E-203 | – | |
| PANTHER | 3 | 587 | 585 | 9.1E-203 | – | |
| SUPERFAMILY | 7 | 133 | 127 | 1.08E-36 | ||
| SMART | 9 | 121 | 113 | 1.7E-32 | ||
| ProSiteProfiles | 10 | 125 | 116 | 43.489 | ||
| Pfam | 11 | 119 | 109 | 4.3E-24 | ||
| CDD | 12 | 125 | 114 | 1.87441E-28 | ||
| MobiDBLite | 132 | 161 | 30 | - | – | |
| MobiDBLite | 132 | 180 | 49 | - | – | |
| Gene3D | 176 | 239 | 64 | 3.0E-31 | – | |
| ProSiteProfiles | 177 | 236 | 60 | 11.491 | ||
| SUPERFAMILY | 178 | 237 | 60 | 1.11E-18 | ||
| TIGRFAM | 180 | 233 | 54 | 1.0E-23 | ||
| Pfam | 182 | 232 | 51 | 2.2E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Phosphorelay signal transduction system | A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. |
Expression pattern of LotjaGi1g1v0379100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…