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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0384400 |
| Transcript ID | LotjaGi1g1v0384400.8 |
| Related isoforms 8 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase; TAIR: AT5G11170.1 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp|Q56XG6|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15; TrEMBL-Plants: tr|A0A151RLG2|A0A151RLG2_CAJCA DEAD-box ATP-dependent RNA helicase 56; Found in the gene: LotjaGi1g1v0384400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86775602..86778948) extracted from Lotus japonicus Gifu genome v1.2.
ATGCGTCAGAAAGGTTTTGTTTTACTTATCACCACTTCCTTCGGCCCTGTTTTCTTTGCTTTATCATCAGTGCAACATGA GTGCATCCCTCAAGCAATCCTTGGAATGGATGTAATCTGCCAAGCTAAATCTGGAATGGGGAAGACTGCTGTCTTCGTTC TCTCGAGTTTGCAACAGATTGATCCCGTTCCAGGCCAAGTTTCTGCACTGGTTCTTTGTCATACAAGAGAGTTAGCTTAC CAGGTAGTTATTTGGGGTTCAGTGCAAGAAAGTTAGGGAATTTAGTATTATAGTTGCTCTTGATTTAAGATGTGCAATCT CTTCTGTGCAGATATGCCACGAGTTTGAGAGGTTTAGCACCTACTTACCTGACCTCAAGGTTGCTGTCTTTTATGGTGGG GTCAACATCAAAGTTCACAAGGATCTGTTGAGAAATGAGTGCCCTCATATTGTTGTTGGAACGCCTGGAAGAATACTTGC ATTGACTAGGGATAAGGACCTTTCTTTGAAGAATGTTAGGCATTTCATTTTAGATGAATGCGATAAGATGCTGGAATCAC TAGGTAATGTTTCTTTGGTGAGTTAAATTATTGTTGGTCTTTTTGTATTTTTCCAATCTGATTATTCTTGTTCCTATTAT GCTTCCTGCAGACATGAGGAAAGATGTTCAAGACATTTTCAAGTTGACTCCCCATGACAAGCAAGTTATGATGTTTTCTG CAACACTCAGCAAGGAAATCCGTCCAATCTGCAAGAAATTTATGCAAGATGTAATGTCTCATGGCCAGTACTACTTGAAT TAGAATTCTCTTTTTCATACTGCCCGCATTCCTTGGGAATTTTTTAGATGTTTAGAATGATGTGGTTTTATCAGCTTTTA CTTCTTATTGGAGTTCTGTTGGATGGTGTGTTCTATCCATTCTATTTTTACTGAAACACCTGGCTGGCAGGCGGAGCGTG GTTGGGTATAGATTGGACTAGGAACATTTGTGTGCCATGTTTCAGTAGTTCTCCTGATTGTCGCCATATGTATTTTCTCT TCTCTCTTTAGGTTCATGTTGGAAGTTAGTTTTGTCTCTATAATCAGGTTGGTGTCAAGTATGGGTTTTTCTGTGTGTTG GGATTTTTTTTCCTTTAGAGAGGGGTAGGGTTGTTAGGTTATTCTGGGTTTGTTGCTGCCAGTTTTCTTAGTGAGTGTCA AGTGTTAGTGGCACTTGCTTGGCGTGGCCAAAAAAGTTTCTGCAAGGAGACAAAACAGATGCAAAGAAACTATGATTCAG GAGATCTGCATCCATCATTCATTACGTTCTGGATTCCATTAGCTTGTGGAAGGACCCTAATTTGATTCACTGAAATTTGT TCCTTTCAGCCTATGGAAATTTATGTCGATGATGAGGCCAAGTTAACCCTTCATGGACTTGTGCAGGTATGGTTTTATCA TTTCTTTTTATTTCTGCCCTTTTAAATGTGTCATTATAGCTTACCTAGATGCTGGATGTGGCAGCACTACATCAAACTGA AAGAGGAGGAGAAAAACCGGAAGTTGAATGATCTTCTTGATGCACTAGACTTTAACCAAGTAGTTATCTTTGTGAAAAGT GTGAGTAGAGCAGCTGAGCTGGACAAACTACTTGTGGAGTGCAACTTTCCATCTATATGCATTCATTCTGGCATGTCCCA GGAAGAAAGGTATGTTCCATGATACCTCAATGGGTGCTTTTATATTTTTTTAGTTCATGCTTTGATTGATGATTTGGTTG GCCAGTTTCATTTGGTGTGTTGTTGTTCTTTGTTTCAAACTTTCAATTTTGTTTACTTGTGTTGTGTTCTTTGTTTGTAA GCTTTCAATCTGATATTAATTTTTATTGGAGTAATTTCAATTATCTTTTGGGCTGTGGGGCACAGTACGGGTGCAGCTTC CCTTTTAAGAGGGGAACACTGATTTTCAGTTTTAGTCTTTTTTTGTTGTGAATGGTGACATTTATTTTTTTGATACAATT TATGATGTTGGAATCCGCTATAGTATTATATGCTTGAAAGGCTGGAAAGAAAACTATAGATCAGATCTGTGGATTGTATA TGGAGCTGTGCAGAAAAAAGCACTGATCTTGCACTGACATATGACAATAATGGCTTAGAAAGCTGCCTTTGCTTGTTCCT TTTAATATATGCACTATTGATCTGGTATCAGTTATCTACACTTTTAACTGTCCAGAGATTGTATCTGCAATGGTATATTT AATAACAGCAGAATTAACAAATTTGTGAAAGTCTGAATGAACTTAAGTTCTAACTTCCAAGCTGCCTTTGTTAACAAGTT GGTGATTATGTAAGTTGGGAATTTCTGAATAGAATTGCTGGAGTGGGTGATGAATGGGTTTGTTCAATCGTCTCTTTATG GAGTATCTTTGGTTTTGATGTTCTAAAGTGTTAGCAAATGCCACTTTTGATGTGAAACAAGACACATGATGACTCTTTGG AAAAAAACTAATTGTATGTATGATTAATGAAGTTGAGAGAAGGGGTGCTTCTCTTAGTGTCTCCTTTCATTTAGTATTTA CATAGTTCGCTGATAATAGTCTTCGATTTCTCCATTTTTCCATTGAAGTATGTTAATATTGGTTACTGATTTCTATGTTA AAGATATCAGCCAATTTTATGTTGGCTACCGTAGGCGTAACACAACTTTTCTTCTTTACCCGGACCAGCTATGACAGCAT AGGCGGGGTTTTTAATTTGCTGTTTTGTTATTGTTTTTTTTTCCTGGTCACACTGTAAAGAAGCTGTTCTCTGAATCAAT TATGTTTGTGTATGATCTTGGTTTATGTATCTGCAGGTTAAAGCGTTATAAAGGTTTCAAGGAGGGGCATACAAGGATTC TGGTGGCAACAGATTTGGTTGGTAGGGGGATTGACATTGAGCGAGTCAATATCGTTATAAATTATGACATGCCTGATTCT GCTGACACATATTTACACAGGGTATGGTTGAACAAAACCTGATAAGTTACATCTTTTAGCAATTTCTTGTAAATAATTTT AACTTGGGGTAGTCTAACTTTTTTTGGAGCGAGCGTACAGGTTGGCCGAGCTGGAAGATTTGGCACCAAAGGCCTTGCAA TCACATTTGTTTCATGTTCTGCTGACGTCGATGTTCTAAACAATGTAGGGAGCTATTTTTGTTGGATTTCGTTGACATAT TTGGCTGTTTCCATTAACATTTTTTATTTGGCTGTTGTGATTTTCAGGTCCAGTCAAGGTTTGAGGTGGATATAAAGCAG CTTCCTGAGCAGATTGATACCTCTACCTACAGTATGTGATTTTTCATTCAATTATTAGTTCCTTTGA
CDS sequence (LotjaGi1g1v0384400.8) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGTCAGAAAGGTTTTGTTTTACTTATCACCACTTCCTTCGGCCCTGTTTTCTTTGCTTTATCATCAGTGCAACATGA GTGCATCCCTCAAGCAATCCTTGGAATGGATGTAATCTGCCAAGCTAAATCTGGAATGGGGAAGACTGCTGTCTTCGTTC TCTCGAGTTTGCAACAGATTGATCCCGTTCCAGGCCAAGTTTCTGCACTGGTTCTTTGTCATACAAGAGAGTTAGCTTAC CAGATATGCCACGAGTTTGAGAGGTTTAGCACCTACTTACCTGACCTCAAGGTTGCTGTCTTTTATGGTGGGGTCAACAT CAAAGTTCACAAGGATCTGTTGAGAAATGAGTGCCCTCATATTGTTGTTGGAACGCCTGGAAGAATACTTGCATTGACTA GGGATAAGGACCTTTCTTTGAAGAATGTTAGGCATTTCATTTTAGATGAATGCGATAAGATGCTGGAATCACTAGACATG AGGAAAGATGTTCAAGACATTTTCAAGTTGACTCCCCATGACAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAGGA AATCCGTCCAATCTGCAAGAAATTTATGCAAGATCCTATGGAAATTTATGTCGATGATGAGGCCAAGTTAACCCTTCATG GACTTGTGCAGCACTACATCAAACTGAAAGAGGAGGAGAAAAACCGGAAGTTGAATGATCTTCTTGATGCACTAGACTTT AACCAAGTAGTTATCTTTGTGAAAAGTGTGAGTAGAGCAGCTGAGCTGGACAAACTACTTGTGGAGTGCAACTTTCCATC TATATGCATTCATTCTGGCATGTCCCAGGAAGAAAGGTTAAAGCGTTATAAAGGTTTCAAGGAGGGGCATACAAGGATTC TGGTGGCAACAGATTTGGTTGGTAGGGGGATTGACATTGAGCGAGTCAATATCGTTATAAATTATGACATGCCTGATTCT GCTGACACATATTTACACAGGGTTGGCCGAGCTGGAAGATTTGGCACCAAAGGCCTTGCAATCACATTTGTTTCATGTTC TGCTGACGTCGATGTTCTAAACAATGTCCAGTCAAGGTTTGAGGTGGATATAAAGCAGCTTCCTGAGCAGATTGATACCT CTACCTACAGTATGTGA
Protein sequence (LotjaGi1g1v0384400.8) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRQKGFVLLITTSFGPVFFALSSVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVPGQVSALVLCHTRELAY QICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDM RKDVQDIFKLTPHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDF NQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDS ADTYLHRVGRAGRFGTKGLAITFVSCSADVDVLNNVQSRFEVDIKQLPEQIDTSTYSM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 19 | 19 | - | – | |
| SignalP_EUK | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 5 | 15 | 11 | - | – | |
| Gene3D | 13 | 204 | 192 | 5.1E-58 | – | |
| Phobius | 16 | 20 | 5 | - | – | |
| SMART | 17 | 218 | 202 | 9.5E-53 | ||
| PANTHER | 18 | 363 | 346 | 1.6E-214 | – | |
| PANTHER | 18 | 363 | 346 | 1.6E-214 | – | |
| Phobius | 21 | 378 | 358 | - | – | |
| CDD | 22 | 204 | 183 | 2.97747E-136 | – | |
| Pfam | 23 | 188 | 166 | 2.5E-37 | ||
| ProSiteProfiles | 29 | 202 | 174 | 25.461 | ||
| SUPERFAMILY | 67 | 346 | 280 | 1.06E-68 | ||
| ProSiteProfiles | 214 | 375 | 162 | 22.096 | ||
| CDD | 215 | 344 | 130 | 7.76923E-58 | – | |
| Gene3D | 216 | 378 | 163 | 8.0E-53 | – | |
| Pfam | 228 | 335 | 108 | 5.2E-28 | ||
| SMART | 254 | 335 | 82 | 4.4E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi1g1v0384400.8, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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