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LotjaGi1g1v0390800.1

Overview

Field Value
Gene ID LotjaGi1g1v0390800
Transcript ID LotjaGi1g1v0390800.1
Lotus japonicus genome version Gifu v1.2
Description Potassium channel; TAIR: AT4G32650.1 potassium channel protein; Swiss-Prot: sp|P92960|KAT3_ARATH Potassium channel KAT3; TrEMBL-Plants: tr|G7JC98|G7JC98_MEDTR Potassium channel KAT3 protein; Found in the gene: LotjaGi1g1v0390800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:87457680..87464882) extracted from Lotus japonicus Gifu genome v1.2.

GGGTATTATATATAGTATAGTATTATTGGGTGAGTTATGACTTAAGAAGACTAAGTTGGTAATTTACTCATTTTATTGTG ATAATATTGAATCATTTAATAGGCGGAGATCAAGTAGCCTGTAGAGAAGAAAAATAATCCGTTGACAAATACTGAGTGTG CCGTCCATGTTGACAAATTTCATGGATTACGCCCTCATCTCAATCTTTCATATAATAAGTTATCTTTAATAATTAAGATA AGTGAAAGCTCCCTGTCACCTTCCCTCTACATATTATTAATCTAGTTCATAATGTTCATGGAAACTCACACAAGAAGTTG ACTTTAATTTTGTCATTTGAATATAAGTAGACAACCTTACCCAGTGCATATACATTATTATGCAAAACCGCGTGACTAAC TAGAAGTGTTAATCTCTTTCTCTTGATCCTCACGGTGGCTCTGATTAACAATGTCATTGCCATCTCTAGTTAGAAGACGT TCAACTGCGGAAATAAGGAACTTGGCCGCAGTTTCCAGCAGCCTCTTACCAGCATTTGGCACCGTTTTGAATGAAGGTAA CACGAATCTAAGAAAACATGTCATCGCTCCCTATGACCGAAGATATAGGTACATATTTTCATTTCCATCACACAATTAGT CATTTGAATTTCGTTTTTTACTAAATTTCTCTGGACCAGTGTGGTAAAAGTCAAAGAGTGTGGCTCCTAATTCGAACTTT AGACTAAAGATTCAAATAATCAATTTTAACTGGTGCAAATTTTTTATGCAGGTTGTGGCAAATGTTCCTAGTGGTATTGG TGGTTTATTCAGCCTGGGCTTCTGCATTTGAGCTAGCTTTCAGAACACTGTCAGTTGGGTCATTGTTGGTGGTTGATCTA GTTGTGGATGTGTTCTTTGCAATTGATATAGTTCTAACTTTCTTCGTGGCTTACTTGGATACTTCAACTTATTTCCTTGT TGATGACCATAAGAAGATTGCTATTAGGTACGTCAAGAAGTTACACTTTGCCATGGACCTGGCTTCTACTGTGCCAATTC AGCAGATATACCAACTTCTGGCAGGTAAATCACACGGAAATGAGTTCTTTGGTTTCCTGAATTTGCTTAGACTCTGGCGA TTAAGGCGTGTTAGCGAACTCTTCACGAGGTACATTCATCAAAGTGAAAATCTCTTATTTCTCTTTCGAAATGTGTGCTA CTCTTGAAAAGTACTGAATTGATTATGAATAATTAAATATTATGGTCTTTAAATATCTGCTACATAATGCTTTGATTTCC TATTTTCCAGGCTAGAGAAAGACATACGAGTTAGCTACTCGGTAACAAGATTTTTTAAGCTTGTATGCGTAAGTAAATCA CTGAATTTTCTCTCTGAGCATAGATCTAAATGAGATATTATCATCAAATTGACTAATGTAAGTTGGTTCATACCTCACTT TTGGCTGGTTTATCACAGGTTACGCTATGTGCAGTGCACTTCGCAGGCTGCACGTATTTCTGGTTGGCGGTACATCATAA AAATCCTGAAAACACATGGATCGGGAAGCAAATGGAGGATTTTAAACATAGAAGTGTCTGGTTGGGTTACACTTATTCCA TGTACTGGTCAATGGTCACTCTTAGCACTGTTGGCTATGGAGATTTACATGCAGAAAATTCAAAGGAGAAGCTTTTCAAT ATATTATATATGCTGTTTAACATTGGCCTCACAGCATATATAATCGGAAACATGACAAATCTGGTGGTTCATAACTCTGT CCGAACCATTGCCATGGTAAATTACTAAAAAATATTTAAAAACTGACACATTCACAATCACTTTCTGTGTCATAGCATTT ATATCTTTCTATTTTTTTTTTCCTATCACGTATCCATCATATTTTCCTATTCTCTCTCAAGGTCGAGGTAAATTTTTAAT TACCTCCTCCCATATTTCACCTTCACATGTTGCTAAGGTTATAAAATGGGATTTATGAAATATTTGAACAGCATATGCTC ACTTAATTCAGACAGGCTTAAACAGGAATTTATTAGAAAATGGGCAATACAAGAGAACACATGTGGTTTCAGAAAACTTA CCTGAGGCATACAATGCCAAAAACTAATATGTTTCATCGCCTTGCTTCACAGAGAGATGCCTACAACAAAATATTACAAT ATGCAAGCAAAAACAGACTCCCAGAAGGTTTGAAGGAGCAAATGTTGGCACACACACAATTGAAGTTCAAGACAGCAGAG TTACAGCAAGAACAAGTGCTACAAGACCTGCCTAAAGCAATTAGAGCCGGCATTGCTCAGCATCTTTTCCGCAATGTAGT TGAAAATGCATATTTATTTAAAGGAGTTTCTAATGATTTTATCACACTGCTGGTAAAGCTTCCTCCCTTTTAGGTTTCAA TTAAATAAATTCTAAACACCTCAACAGCAACTAAAACTGACATCATGACATTACACAGGTAACAGAAATGAAAGTAGAAT ACTACCCATCTAAGGTTGACATAATCTTGCAAAATGAGATGCCAGCATATTTCTACATTTTGGTGTCTGGATCAGTGGTA AAACATCTATAACTTTTTCAACCATGCTTGTACCATGCTTAAACAATTAACTTCAAACTGAACTGTTTCTATCCGCAGGA TGTGTTGATATACAAGAATGGGTCTGAAAAGGTAAGATGGAATCCCCCAGACAAATAATTTCAGGGCATTAGTAACATGT TTAACTGAGCAATAACTTAGACGCCGAGTGAACTGGAAAAACTAGTACATAAATCACTAATATCATGTGGAAGAAAGTAG TTTGAAGAGGAAATAAAGATAACGAAAAATTAAACCTCAGTTGGAAAAAAAAATGAACTGAAATTGTAATTCATTTAATC TGAATTTCAGGAAACCTTGGATCCATTAGAGCTTGTCAATTATAGAGAATGAAAGTATCTAATAGTCATACAAATGCATG ACAACATATTGCATAACCCAGAGGTATAAGTCATTTAGGAAGAGCATGTTTACTTTACAGAATTAAGAGTTCTTCAACTT CAAGCACTTCCAGGCAACCTGCTGAGCAAACACATCAAACAAAGTGAAATTCATTAAACTGTATCCAGAAATCATCCTCA TCATACATGTAAATTGAACATATGGTCGAGCTGGGAAGTAAGAACCACAAGTGTACACAGCCAAAGAGATTTAGAGGGAT AAAGGAGAGAAGAAAAATAATATGATTCAAAAGAAGTATCTGTGTTTCTAAGTTAATGATGACACATTGCTTAACTAAGC TCATAAATATTTTTCAGTTCTTGCACAAACTAGAACCAGGAAGCACGGCAGGAGAAATCGGCGTGATGTTTAATAGTCCA CAACCTTATACAGTGAGAAGTAGAAGGCTCTCCCAGGTTATACGAATCAATCATCACCATTTCAAGCAGATGGTGCAGCC ATTCAGTGACGATGGGAAGGCAATCATCAACAACTTCATTCAGGTTCGAAGATTCAACCATACATAAGATAGAAAGACAT TCACAGAAAGCCCCAAACACACATTTTCATTTTAAAGTTAATCTACACTCTTCAAATTTGAGCCATTGGTTACCCAAATT CCCACATTTTACAAGCCCATATCTGAATTCCCTTCATACTAACTTCATATCTATATCTCAGTATCCATGTCAACAAGCCC ATATATTTTTATATTAATGCCGGTTCTTTTACTCAGTTTATGAAAGGTCTAAAAAGAGACGTGCTAGAAGAAATACCATG CGTAACAGAATTGCTGGGTGACCTGAATGATGAGGTATATATTTTAACTTTGAATTTCAACAACTAAAACTTTTGCATGA TCTAAGATAGAAGCATAAACTATTTATTTATCTCAAATGTAGAAAAAATTCAAATAAAGAAAAGGATGCACAATTCTTGG ATCCCAAACATTGCATTTAGCTAAAACCTTAGGTAAACTTATTTACAATTAGTGCATGAGAGAATGATGGTGGCCACAAG CATAAAATTCCGCCTGAAAGATGCTAAAATCTTGGATATTGCTTCAAGCCATATTTTTTAGAAAGAGAAGAAGGAGAAAT GAAGGACAAAGGAATGAATGCTCATTAAAATAGAAAATTTCCCCTGATCCCCTCCAATGCACCCGTTGCTCCTTTTACCA AAAGGGACATTCAGGAAAGGTTACCTGATGATGTATAGATAATCACTTTCTTTGAATGTCTAGACTGTGAAGATACATGT AGTAACATGTGAAAGATGAAAAATTTAGATTATATTATGCATCATGAAGCAACTCCTCCAAAAACTCAAATTGTAAGCTA ATGCACATGAATAGTTTTATATTCCCATTATTGTGCATGATACATCAGCAAAGGCCTGAATAAACACTTAGCTATTAAGT TAATAATGAAATTAGTCTGTGGAAGATACAAATTGTTATATTAGTCCCTCAAGGATGAAAATTATAATATAGATCCTGAA CAATGTTTTGACTGCCAAATTCATCCCTGAATATGTATGTCATCAATCATATTAGTCTTTACAATACTTAATCTAAGGAC TAAATTGGTCAAAATTTCAGCATTCAGAGACACTTTTGGCAATTTATATCTTTGAAGGACTAAAGAAACTTATTTGGTTA ACACTTTTACATGATATGATCCAGAAAGAAAAAATGTAATACAACAATAGAACTGTAGAGGATACATAGTGTACAGTCCC CGTTCAGATGGCAGTGACACAGACAAATAAAGTCATTATAATGTTGGCAAAATAGTGTACATATTTGATGAACATTGTAT GCTTCTTGCAGCATCTAACACAAACGCAGGGCACACACAATGAAGTTAGAAGTCATGAAGATGATCCATATGAAGAAGGT AACCTTAATTCTATGGAATTTGTAAAAAAATACTGATGTCTTTTGAGCTAAATGACAAAATTTACTTGCTTAGCTAAGTT AGAGTGATAAGCTCATGCTAGTATGCTACTAATTGCAGGGAGAACAGAAAGTTCCAATCCACAGTCAAGCCCAGTCCCCA TCAGAGTCAAAATCTACGGACATCGTCCCAATGAAAACGAAATGGGAAACGGAACAACACCGAAGCTCATACTTCTCCCA AATTCACTCGAGGATCTTTTCAGAGTCGCAGGTATGAGTATGAAGTATGAACTAATTGACTACATTCAAAATGCATACAT ACATATTAAATGCTTACCCCAAATGATTATGAGTGGTTTCATGATTGAATGATACTGAAAAAATAAAATTAGCCTATTGC ACTTTAGTCTAAAACAGGAAGGGGGAAAAAACAATCCCCTATATGATTTCATTATTCAAAGACTTCATGTTCTGCCATAA TAACATATTGCATATTATATCATAATTAGTCTTCTACTCATAGAATTAAACATATTGAGGTAGCAGCATATTACAATAAC AAGGTGGCTGGGTTGATTTGAGGTTTTGTGTATGCAGAGAAAAAGTTTGGAAAACGCGGAAGCAAAATTGTTATGGCTGA TGGCTCAGAAGTAGAAGAACTAAGCGCCTTAAGAGAGAACGATGAATTATATATCATCTAATGATCACATCAGACAGAAA TTAACGAAACAGGATAGGATTGCAATGTACAAAAATGATAGAAAATATGCATGGAATTTTGAAACGTATGGAGTTAAATT TCATATATAATTAAACAGAAGCATGTAGAATGATACCGTAGAGCGTTTTAATCTCTGTTGAGCATGTCAAGAACAGCATA AGCAGCTTTCTGAAAATGATCCTTCTCTTCATCTAAGGCTCTTTTCCTCTCGAGAGCAGAACCTTTGCATTTCTCCACCT CTTCATCTATCACTGCAGAATTCTGATTAATTTCACTGCAAAATGAGAGTTGCGTACAAGTAGCCGTTAGATCCTGAACC AGAAACTAATCACAAGTGCAGATCTGAAACCGAAAGCAGAAGAATATATAACAATTGTCTTAATCGGAACGTGATCTTGA AAATGAGTAAAAAATGATGATTAGGAAGCTAACGCTGTCATCTTAAGCATGTTCTCCATCACCGATTGTGCTTCATTTGA AATCTCTGCACGGTTTAGCAGAATAATCAGGATTCAAAGCAAACAGGCACAAAGTAAAATCAATGATCAATCAAACTATG CAGATCTTGGATCTAGATTACACTAACATCGCATTTGATTCGAATAAACAACAATTAGGTTTGAAAATCGCAGCGATTGT GAAAACTCGAGTTGAAGAATGCGATAGGGTGGTTATGGCTCACCGTAGATGAGAGAGGTGAGGTGGCTTTCGGTTTCTGC TACCGTTAGTGCTGACTCTGGATCCGCCATTGATGTGAAGCTTCTTGCTTGCTTGGGAGGGAAATTGCAACTGAATATCG ATGCGCGCGCTTCGAAGATTTTTTGAATGGGTTTTTATGAAATGAGAGGGTTTATATAGGAGGGGAAAATGAAACTAAAT TAGTTTAATATGATCTTTTACCTTTTTACCCCTAGTTGGTTCCGTTTTGTTCGGGCCTGGGCTTGTTAAGTTTTTGCTTC CTCTAACATTCTTTCGGCCCGCGGCCCACGACATGATTCTAACTGCCCCCATCACTCACAAAATCGCATTTTTTTATTTT TGAAAAAAAAATATAGTGGTGTATATATATAGGCATTTCAAATGTAAAGTATAAATATGTTCACCAAAAGTAAATGCACT TTTGTTAGAACCAAAAAGCCCGTAACAACTACTTTGGTAGTCGAAAATACAGGTCAACTGCATTATAATGATTAGTTGTG GTATCCTGCCGAAACAACAGGATTAACCATTGACACAATAAGGCAAAAGAGTCAAACAAGGGAAACGTGCATCTGGATTG GATTTGTAGACAAAGATAGAATTCTGAGTGTAAAAGAGAAGATATTTAAGGTAGTTAGGGTTTCGTCACGTGTTTTTGAG AGCTTTATTTCTAATCCTTAATAATATGAATGGTGATTCCACTCTGAACTAGCTAATACAAAGAAGATTGGTCAAAATAG TATTCCGAACTAACTAGGAGTGAGAAGACAATAACACATCACGATTTATAAAGTGGCTTGTGTGAAGAGCAAGACGTGAA TCAGTGGTAATATGTCAAATTAACTGTTATAGTTAGCTGATTTCTCCTTATTAAAAATGCGCAATCAAAAGCCATCAATA CAA 

CDS sequence (LotjaGi1g1v0390800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCATTGCCATCTCTAGTTAGAAGACGTTCAACTGCGGAAATAAGGAACTTGGCCGCAGTTTCCAGCAGCCTCTTACC AGCATTTGGCACCGTTTTGAATGAAGGTAACACGAATCTAAGAAAACATGTCATCGCTCCCTATGACCGAAGATATAGGT TGTGGCAAATGTTCCTAGTGGTATTGGTGGTTTATTCAGCCTGGGCTTCTGCATTTGAGCTAGCTTTCAGAACACTGTCA GTTGGGTCATTGTTGGTGGTTGATCTAGTTGTGGATGTGTTCTTTGCAATTGATATAGTTCTAACTTTCTTCGTGGCTTA CTTGGATACTTCAACTTATTTCCTTGTTGATGACCATAAGAAGATTGCTATTAGGTACGTCAAGAAGTTACACTTTGCCA TGGACCTGGCTTCTACTGTGCCAATTCAGCAGATATACCAACTTCTGGCAGGTAAATCACACGGAAATGAGTTCTTTGGT TTCCTGAATTTGCTTAGACTCTGGCGATTAAGGCGTGTTAGCGAACTCTTCACGAGGCTAGAGAAAGACATACGAGTTAG CTACTCGGTAACAAGATTTTTTAAGCTTGTATGCGTTACGCTATGTGCAGTGCACTTCGCAGGCTGCACGTATTTCTGGT TGGCGGTACATCATAAAAATCCTGAAAACACATGGATCGGGAAGCAAATGGAGGATTTTAAACATAGAAGTGTCTGGTTG GGTTACACTTATTCCATGTACTGGTCAATGGTCACTCTTAGCACTGTTGGCTATGGAGATTTACATGCAGAAAATTCAAA GGAGAAGCTTTTCAATATATTATATATGCTGTTTAACATTGGCCTCACAGCATATATAATCGGAAACATGACAAATCTGG TGGTTCATAACTCTGTCCGAACCATTGCCATGAGAGATGCCTACAACAAAATATTACAATATGCAAGCAAAAACAGACTC CCAGAAGGTTTGAAGGAGCAAATGTTGGCACACACACAATTGAAGTTCAAGACAGCAGAGTTACAGCAAGAACAAGTGCT ACAAGACCTGCCTAAAGCAATTAGAGCCGGCATTGCTCAGCATCTTTTCCGCAATGTAGTTGAAAATGCATATTTATTTA AAGGAGTTTCTAATGATTTTATCACACTGCTGGTAACAGAAATGAAAGTAGAATACTACCCATCTAAGGTTGACATAATC TTGCAAAATGAGATGCCAGCATATTTCTACATTTTGGTGTCTGGATCAGTGGATGTGTTGATATACAAGAATGGGTCTGA AAAGTTCTTGCACAAACTAGAACCAGGAAGCACGGCAGGAGAAATCGGCGTGATGTTTAATAGTCCACAACCTTATACAG TGAGAAGTAGAAGGCTCTCCCAGGTTATACGAATCAATCATCACCATTTCAAGCAGATGGTGCAGCCATTCAGTGACGAT GGGAAGGCAATCATCAACAACTTCATTCAGTTTATGAAAGGTCTAAAAAGAGACGTGCTAGAAGAAATACCATGCGTAAC AGAATTGCTGGGTGACCTGAATGATGAGCATCTAACACAAACGCAGGGCACACACAATGAAGTTAGAAGTCATGAAGATG ATCCATATGAAGAAGGGAGAACAGAAAGTTCCAATCCACAGTCAAGCCCAGTCCCCATCAGAGTCAAAATCTACGGACAT CGTCCCAATGAAAACGAAATGGGAAACGGAACAACACCGAAGCTCATACTTCTCCCAAATTCACTCGAGGATCTTTTCAG AGTCGCAGAGAAAAAGTTTGGAAAACGCGGAAGCAAAATTGTTATGGCTGATGGCTCAGAAGTAGAAGAACTAAGCGCCT TAAGAGAGAACGATGAATTATATATCATCTAA 

Protein sequence (LotjaGi1g1v0390800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSLPSLVRRRSTAEIRNLAAVSSSLLPAFGTVLNEGNTNLRKHVIAPYDRRYRLWQMFLVVLVVYSAWASAFELAFRTLS VGSLLVVDLVVDVFFAIDIVLTFFVAYLDTSTYFLVDDHKKIAIRYVKKLHFAMDLASTVPIQQIYQLLAGKSHGNEFFG FLNLLRLWRLRRVSELFTRLEKDIRVSYSVTRFFKLVCVTLCAVHFAGCTYFWLAVHHKNPENTWIGKQMEDFKHRSVWL GYTYSMYWSMVTLSTVGYGDLHAENSKEKLFNILYMLFNIGLTAYIIGNMTNLVVHNSVRTIAMRDAYNKILQYASKNRL PEGLKEQMLAHTQLKFKTAELQQEQVLQDLPKAIRAGIAQHLFRNVVENAYLFKGVSNDFITLLVTEMKVEYYPSKVDII LQNEMPAYFYILVSGSVDVLIYKNGSEKFLHKLEPGSTAGEIGVMFNSPQPYTVRSRRLSQVIRINHHHFKQMVQPFSDD GKAIINNFIQFMKGLKRDVLEEIPCVTELLGDLNDEHLTQTQGTHNEVRSHEDDPYEEGRTESSNPQSSPVPIRVKIYGH RPNENEMGNGTTPKLILLPNSLEDLFRVAEKKFGKRGSKIVMADGSEVEELSALRENDELYII 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 30 30 -
Phobius 1 17 17 -
PANTHER 10 623 614 0.0
PANTHER 10 623 614 0.0
Phobius 18 26 9 -
Phobius 27 30 4 -
Phobius 31 53 23 -
SUPERFAMILY 47 294 248 5.36E-43
Gene3D 52 296 245 2.0E-22
Pfam 53 294 242 5.0E-31
Phobius 54 72 19 -
TMHMM 57 79 23 -
Phobius 73 83 11 -
Phobius 84 108 25 -
PRINTS 88 98 11 2.9E-11
TMHMM 94 116 23 -
PRINTS 99 108 10 2.9E-11
Phobius 109 192 84 -
Phobius 193 216 24 -
TMHMM 193 215 23 -
Phobius 217 236 20 -
Phobius 237 258 22 -
TMHMM 238 260 23 -
PRINTS 242 259 18 2.9E-11
Phobius 259 269 11 -
PRINTS 268 279 12 2.9E-11
Phobius 270 295 26 -
TMHMM 273 295 23 -
PRINTS 286 295 10 2.9E-11
Phobius 296 623 328 -
Gene3D 298 362 65 5.5E-5
SUPERFAMILY 301 490 190 5.22E-38
Gene3D 363 502 140 1.7E-22
CDD 372 485 114 3.72503E-23
SMART 372 489 118 1.1E-22
ProSiteProfiles 372 491 120 23.29
Pfam 393 475 83 9.3E-14
MobiDBLite 518 552 35 -
MobiDBLite 526 540 15 -
ProSiteProfiles 554 623 70 26.001
Pfam 554 622 69 1.4E-18
CDD 568 622 55 6.86998E-10

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Ion channel activity Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).
Molecular function Voltage-gated potassium channel activity Enables the transmembrane transfer of a potassium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.
Biological process Ion transport The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Biological process Potassium ion transport The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Biological process Transmembrane transport The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0390800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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