Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0397800 |
| Transcript ID | LotjaGi1g1v0397800.2 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 26S proteasome non-ATPase regulatory subunit-like protein; TAIR: AT1G29150.1 non-ATPase subunit 9; Swiss-Prot: sp|Q9LP45|PSD11_ARATH 26S proteasome non-ATPase regulatory subunit 11 homolog; TrEMBL-Plants: tr|I3S4X3|I3S4X3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0397800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:88434121..88435613) extracted from Lotus japonicus Gifu genome v1.2.
TACTCGTTCTTTTGTGCAACCAATTTTCCCCTTTCTCTAGAAAAAAAAGGTAGCCTCCCTTTATATGTTACAGGCATCCG ATTTTTTAGGGGGAATTGCAGCTACTGTATGAGATGATAATTTTCACTTGCCAATTAATTGATTGTAATGCTAAAGTTGT TAATTTTAAATGTTTCTCCTCATTTTCAAATGTTTTATTTCAGGATTTTCTCTGAGCAGGAGCCATGTCTTCATCTTATC TTCCTGCCACAACAGAATCAGTTGCTTTGGCATTGGAGGCCAAAGACCCATCTGAGGGCATTTCCATTCTTTACCGTGTG CTTGAAGATCCTTCTTCTTCACCCGAAGCCTTGCGTATGAAAGAGCAAGCCATCACAAACCTCACTGATCTTCTCAGGCA AGAGAATAGGGGAGAGGATCTGCGCAGCCTTCTCACTCAATTGAGGCCCTTTTTCTCCTTGATTCCTAAGGCCAAAACTG CAAAGATTGTTAGGGGAATAATTGACTCTGTTGCTAAAATACCAGGGTCATCTGATCTACAAATTGCACTCTGCAAAGAA ATGGTGCAGTGGACCCGTGCTGAAAAGCGTACCTTTTTGAGGCAGCGAGTTGAGGCAAGGCTTGCAGCACTTCTGATGGA AACTAAGGAGTATTCAGAAGCTTTGACTCTTCTTTCTGGGTTGGTCAAAGAGGTTCGGAGACTAGATGACAAGCTGCTTC TTGTAGACATAGACTTGCTGGAAAGCAAGCTACACTTCTCATTAAGAAACCTTCCGAAGGCAAAAGCTGCTCTCACTGCT GCAAGAACAGCTGCAAATGCTATTTATGTGCCTCCAGCTCAACAAGGTGCAATTGATCTCCAGAGTGGAATACTTCATGC TGAGGAGAAGGATTACAAAACAGCATACAGTTATTTCTTTGAAGCTTTTGAGTCCTTCAACGCTCTTGAAGACCCCAAGG CTGTTTTTAGCTTAAAATACATGTTGCTGTGTAAGATCATGGTGAATCAAGCTGACGATGTGGGCGGAATTATTTCATCG AAAGCAGGCCTGCAATATGTTGGACCTGATTTGGATGCGATGAAAGCTGTTGCTGATGCTCATTCCAAGCGATCCCTCAA GTTATTCGAAACCGCTTTGCGTGACTACAAGGCGCAGTTGGAGGAAGATCCAATTGTTCACAGGCACCTGCAGTCCCTTT ATGGTACCCTTATGGAACAGAATCTTTGCAGATTGATTGAGCCATTCTCAAGGGTTGAGATTGCACACATTGCTGAGCTT ATTGAACTTCCCATTGATCATGTGGAGAGGAAGTTGTCTCAGATGATTCTGGACAAGAAGTTTGCTGGAACATTGGATCA AGGTGCTGGATGCCTCATCATATTTGATGATCCCAAGACTGATGCTATATATCCTGCAACTTTGGAGACCATTTCAAATA TTGGGAAGGTCGTGGACAGTCTTTATGTTAGGTCTGCCAAGATAATGGCATGA
CDS sequence (LotjaGi1g1v0397800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCATCTTATCTTCCTGCCACAACAGAATCAGTTGCTTTGGCATTGGAGGCCAAAGACCCATCTGAGGGCATTTC CATTCTTTACCGTGTGCTTGAAGATCCTTCTTCTTCACCCGAAGCCTTGCGTATGAAAGAGCAAGCCATCACAAACCTCA CTGATCTTCTCAGGCAAGAGAATAGGGGAGAGGATCTGCGCAGCCTTCTCACTCAATTGAGGCCCTTTTTCTCCTTGATT CCTAAGGCCAAAACTGCAAAGATTGTTAGGGGAATAATTGACTCTGTTGCTAAAATACCAGGGTCATCTGATCTACAAAT TGCACTCTGCAAAGAAATGGTGCAGTGGACCCGTGCTGAAAAGCGTACCTTTTTGAGGCAGCGAGTTGAGGCAAGGCTTG CAGCACTTCTGATGGAAACTAAGGAGTATTCAGAAGCTTTGACTCTTCTTTCTGGGTTGGTCAAAGAGGTTCGGAGACTA GATGACAAGCTGCTTCTTGTAGACATAGACTTGCTGGAAAGCAAGCTACACTTCTCATTAAGAAACCTTCCGAAGGCAAA AGCTGCTCTCACTGCTGCAAGAACAGCTGCAAATGCTATTTATGTGCCTCCAGCTCAACAAGGTGCAATTGATCTCCAGA GTGGAATACTTCATGCTGAGGAGAAGGATTACAAAACAGCATACAGTTATTTCTTTGAAGCTTTTGAGTCCTTCAACGCT CTTGAAGACCCCAAGGCTGTTTTTAGCTTAAAATACATGTTGCTGTGTAAGATCATGGTGAATCAAGCTGACGATGTGGG CGGAATTATTTCATCGAAAGCAGGCCTGCAATATGTTGGACCTGATTTGGATGCGATGAAAGCTGTTGCTGATGCTCATT CCAAGCGATCCCTCAAGTTATTCGAAACCGCTTTGCGTGACTACAAGGCGCAGTTGGAGGAAGATCCAATTGTTCACAGG CACCTGCAGTCCCTTTATGGTACCCTTATGGAACAGAATCTTTGCAGATTGATTGAGCCATTCTCAAGGGTTGAGATTGC ACACATTGCTGAGCTTATTGAACTTCCCATTGATCATGTGGAGAGGAAGTTGTCTCAGATGATTCTGGACAAGAAGTTTG CTGGAACATTGGATCAAGGTGCTGGATGCCTCATCATATTTGATGATCCCAAGACTGATGCTATATATCCTGCAACTTTG GAGACCATTTCAAATATTGGGAAGGTCGTGGACAGTCTTTATGTTAGGTCTGCCAAGATAATGGCATGA
Protein sequence (LotjaGi1g1v0397800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSYLPATTESVALALEAKDPSEGISILYRVLEDPSSSPEALRMKEQAITNLTDLLRQENRGEDLRSLLTQLRPFFSLI PKAKTAKIVRGIIDSVAKIPGSSDLQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMETKEYSEALTLLSGLVKEVRRL DDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNA LEDPKAVFSLKYMLLCKIMVNQADDVGGIISSKAGLQYVGPDLDAMKAVADAHSKRSLKLFETALRDYKAQLEEDPIVHR HLQSLYGTLMEQNLCRLIEPFSRVEIAHIAELIELPIDHVERKLSQMILDKKFAGTLDQGAGCLIIFDDPKTDAIYPATL ETISNIGKVVDSLYVRSAKIMA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 422 | 421 | 3.5E-261 | – | |
| PANTHER | 2 | 422 | 421 | 3.5E-261 | – | |
| Pfam | 16 | 128 | 113 | 3.5E-34 | ||
| Gene3D | 46 | 421 | 376 | 1.6E-158 | – | |
| SUPERFAMILY | 129 | 323 | 195 | 7.46E-6 | ||
| ProSiteProfiles | 223 | 391 | 169 | 19.253 | ||
| Pfam | 285 | 386 | 102 | 4.3E-20 | ||
| SUPERFAMILY | 314 | 396 | 83 | 8.7E-19 | ||
| SMART | 320 | 403 | 84 | 1.2E-18 | ||
| SMART | 320 | 403 | 84 | 1.2E-18 | – | |
| Pfam | 392 | 418 | 27 | 3.1E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0397800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…