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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0422200 |
Transcript ID | LotjaGi1g1v0422200.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | AP-4 complex subunit mu; TAIR: AT4G24550.2 Clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|Q9SB50|AP4M_ARATH AP-4 complex subunit mu; TrEMBL-Plants: tr|I1JT85|I1JT85_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0422200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:91633578..91638641) extracted from Lotus japonicus Gifu genome v1.2.
ATTTAAATTCCGTATCTGTTTTAGTGGGTGCAAAGCCTAAGGGGTGGGGCTCCAAACCCAACTCCCGTTTGTTGCGAAGC GTTTTCCACAGACACAACACAAACCAAAACCAGTGAAGTGAAGAGGGAAGAAGACGATGAGTTGAGTTGAGTTGAAGCAG AAGCAGAACCAAACATGATGATTTCTCAGTTCTTCGTGCTTTCTCAGAGAGGCGACAACATCGTCTTCCGCGACTGTAAG TTTAGCATCATTTTCCATAATCCATCAAATCCATTTTCACATTTCCAACTTCAATTCATTCAAATTCAAACCCTAACATC ACTGATTGAATGCAGATCGCGGTGAAGTGCAAAAAGGAAGTGCTGAGACATTCTTCCGAAAAGTCAAGTTCTGGAAAGAG GATGCTGAAGGAGATGCTCCTCCTGTTTTTGTAGGTATTTCTATTTCAGTCATCATCATATACTGCATGCTAAATCTGGA TAACTTTTTTGTATTTTTAATTTTCAGAATAATTTATATAAGATTCATGATATTTTTCATTGTTTTGATCTTGATTGTTT TTTTGTTTATGTGTGCTCTCCATGTTTTTATTAGAATGTAGATGGTGTGAACTACTTCCATGTGAAGGCTGCTGGGTTGT TATTTGTTGCTACAACTAGAGTCAATGTCTCCCCTTCTCTTGTTTTGGGGCTTTTGCAACGAATCGCGCGTGTTATCAAG GATTACCTTGGTGTTCTTAATGAGGATTCTTTTAGGAAGAACTTTGTGCTTGTGTATGAATTGCTGGATGAAATGATCGT AAGTATTTGCTATTCTTCCTAGCTTGGTTGAACTTATTTATAAATGAGAAAGTTTAACAATAACAACCAAAGTTCTTTTT CACTAGATGAGGTTGGCTTGGCTGCATAGATCAAATAGTGCTATAATGTCCTTTCATTAATCAAATTCAATGGTAGACCA TTTCAATCTAAATCTTTGTAGTTTATATTTTATATAAATGCTCCATATTTTTAATCTAAACATGGTATGTGGGTTATGCT TTAAAATAAAGGGAAAGTTGAGCCTGATTTGGTTACTTGGTTTAAATATCTATTGATAGTTGTAAAAAACTGAATTCTGT TTATTTCCTTCGATACCATTTTATGACTTTTTCACTTTGTTGTATTTTCCCAGATTGCAGTATATTCTGTTTACATATCT AGTTGTAATAAAGTGGATTTGTTCCAGGATTTTGGTTATGTGCAAACAACATCTACTGAACTTTTGAAGTCATATGTTTT CAATGAGCCAATTATGATTGATGCTGCGCGGCTTCCTCCCATGGGTCCTGCTTCCATTTTTATGGTAACTATTTGTAGAG TGAAATGGTCAATTACTTTGTCAAGGCATATTTTCGTTGTCAAACATGGTTATATTTACTTGTTAAACTCATATTTGCAG CAAGGGACCAAACGAATGCCAGGTACAGCTATTACAAAATCTGTTTTTGCTAATGAATCTGGTGGTAAGAAGAGGGAAGA GATCTTTGTTGATGTAATTGAGAAAATAAGTGTTACATTCAACTCTAGTGTGAGTAGCTTGTTCTCTTTTTTTCTTATAT GTTAACTTTGTGTTATCTGTTATGAATGATGTCTTTCTTCCCTTTATACTGCTGCTTAATTTTGAAGCATTTTTATATGA ATTCGTTGTTGGAAACAGGGATTTATACTTACTAGTGAGATAGATGGCACCATTCAAATGAAGAGTTATCTTACTGGTAA CCCAGAGATTCGACTTGCTCTCAATGAGGACCTGAGTATAGGAACAAGTGGTAGGTCAATCTATGTTATATTTTGTTCAA TATGGGAACATTTGGTAGGTCAATTTAGGAACAAGTGGTAGGAGGAACAAGTTGAATTGTTAAAAAATATATGTATTGTT TTGTTACCATGTCCATTTTTCGGGTTGTTTGACATATATTTTCGGCTATCAAGCACTATGTAGTTTACTTCTTTGTTATA ATTCTCTTGCTCTATCATATATGTAAGTTATTGGCATATTGATTTTTTTTATATTGTTTAGTGTCTGGAGGGGAATATTT TTAGTTGGGTTTAGTTGTTTAAGTGTTGATTAATTCATTGATGGATGGATAATTTTCTTGAAGAAACTTGTGTTATTGAC TAGTTGATTTTTGTATCCCTATGGACCTCATCAGTTTTTTCTATATATTTACCTGATCTCATTCTATCATCTTTAACAGA TTATAGAGGTTCAGGTGCCGTGATTTTAGATGATTGCAACTTCCATGAGTCTGTACACCTTGATAGTTTTGATGTTGACC GAACTTTATCATTGGTGAGTGCGTAGTACATTAGCTCAACTATGTAGAGTAAAAAAATAGTATGCTATACTCGAATCCCT TGACTAATTAATTATTCTGCCATTTTTTAACAGGTACCACCAGATGGGGAATTTCCTGTCATGAATTATCGTATGACTCA ACCATTTAAGCCACCCTTTCGTATTAATGCATTGATTGAAGAAACAGGACCCCTCAAGGTGGTTTCGACTCCCCCCTTCA ATTTTCTATGTCTTCTTGTTGCTTATTACGTTCTGACAATTTGTTATATTTTCGTAGGCTGAAGTGACCATTAAAATACG TGCTGAATTCAACTCAAGCATCAATGCTAATACAGTTCTTGTACAGATGCCACTACCAACATCTACGGCTCGGTACTTAA ATTTTCTTCCTGATTATTGTACTTACGAATTTAGTCATAGTTGATAAAATTATAGAAATGATTTAGTGTATAACTGTCAA TGCTGAGCTTGCTAACAAGCCAGTTGGTCTATTTGATAAATGGTAAGGATTTAAGCTCCTAGACCCCATATATAGGTGGG TCAAAAAACATAACCTTCATTAGTTCAACCCACCTTCAAAGATAGAAAGAAAATTTCATCATATTTTCCTTTTTTTTTTT AAATTAAAGTAATGGCAGATGACATATCTAATAATTTTGTATAGCATTAGCAATTATTATTTTAATAAATAAGGATTTTA GAAAATTTGGTTTAACCTCTGAATGAGCAGCAAAAGTTTGTTCCATTCTTGCAACCTGAACCACATCAAGCAGAAAGTAG ATTTCAGTAATTGGACAAAATCGGAAAATCACTGGCTGACAAGTTTCCCTTCATGTTATGCTTGCTTTCTTGCCATCAGT GGAATGGATGGACATAAACTGCAAAAGAAGAGATTGTGAAAAAAATAAGATATTTAAACAAAACAGTAACAGCAGTCAAT TTCACCATATTCTAACACATAAGCCTTTTCAAGCCTTTTTGCTTTTCCAGCACCCAGTATTCCCTCAACTCCGCGTTCAG GATAGAAATTTAATTCCTAATAATGAATTTCTTCAATCATAAACCAGAACTTGAAACATTCAACGTGCAAAATGGAAATA GAAAAGAAACAAGAGTGCTTTCTAGCATTTGTGCTGACTGCAGTATGCTGATCACTGCCTCACAAGTCACATGTGACTGG TTGTGTGGAAGAAAAAGAACTAAATAACGAAAGGAACTAGGAATGGTATGCATCAGAGGCTGATTTGTTCTTCTTGATAC AAATGTAGTGTGCGGATTCTGGAACTAAATGTTCTGCCTTGTTTTAATTTTACATGTGTTTGTTTGGTTTGACAGACCAG GCCAAAAGGCCCATTCATTAAGCATTGTTAAAGTATCATCCTTCTTATATGCTTACTTGCTATCTTGTTGGTATATTAAT TTTCAATTTTTCAGTGTTAATTTTGAGTTAGAACCTGGAGCAGTTGGTCACACAACTGATTTTAAGGAAACAAATAAAAG ACTGGAATGGGGCATAAAAAAGGTAATATTGATCTTTTGTTTTTCCATCAACTATCAATATATTTTAAAACACCAATTTA TTTTATGTTCATAAAGGATTCTTCTGTTAGGTATTTGAGGCCAGTATGAGTATTACTAATATGGATGAAAATAATGTCTG GTCGGTCATCTTACAGGTTGTTGGTGGTTCTGAACATACTTTACGAGCAAAACTGACACTTTCACATGAGTTTCATGGTA CAATGCCGATAGTTCTGTTTTGGCTGAATGTCTAACGGTATTATTCTTTGAAATGAAATGTTGAATTAACGTGTTTGTAA TAAACACAGGAAACATCATGAAAGAAGCAGGGCCTCTTAGCATGACTTTCACTATACCTATGTACAATGCTTCAAGGCTT CAGGTAAAGTACTGAGGATTTTTTTGAAGCTACATTTTCTTTTACATTTGTTAAATTAAGTTTATAGCCTGTTTTCACAT TTTGTGTTTCTTAATTGTAAAATGTGCCAGATCTTACCTTTGTTTTCTTAAAGATTGAGTTAATGGTACTAAAATTGATA GTTTTTTCACATTATCAGTGGAGATTATAGATTCAACTTTCATCTCTGTGATTGCAAATTGTTTTTCTTTTGTACCATCT ATTTTTACATAGTTCTAAGATGCAATTTGTTGGTGCAGGTGAAGTACTTGCAAATAGCAAAGAAGTCAAAAGCACATAAT CCATACCGATGGGTTAGATATGTAACCCAAGCAAACTCGTATGTTGCTCGGTTGTAATTTCAACATCTGCAAGTGCAGAT TCTGAAGTTACTTGTTTTCCTACTCATTAATTTTCATGTATGCTGAATTATTCCAGGATAACTACATGTAGTGTTTTTAG TCAGTTAAAATTGACTGTTTAACTTGCAACTTGTAATTAAATTTGGTTTTTGGTTGCACGCACTCAGGTGAAAAAAATTG GCATCCCTTGTGCCTCTAAAAAGGAAGATAATGATAAATTCACATGGCACTGTAGGAAAAGAGATTTCAATTTCTTACCC TTGGCCTCCAATTTGCCACACCATAAGATGAACTGAACTCTTTTTTCCATTAGAAAATCACATGAGCACAGATCAATCAA TCTTTGTATCAGGTTTTAGGCCGAATAAATCACCGTCTCTGATCACGGGTTCTAGAGTCCAAAATATGATTTAAGAAGAT ATTGTTTCCATTAGTTAATTATTA
CDS sequence (LotjaGi1g1v0422200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGATTTCTCAGTTCTTCGTGCTTTCTCAGAGAGGCGACAACATCGTCTTCCGCGACTATCGCGGTGAAGTGCAAAA AGGAAGTGCTGAGACATTCTTCCGAAAAGTCAAGTTCTGGAAAGAGGATGCTGAAGGAGATGCTCCTCCTGTTTTTAATG TAGATGGTGTGAACTACTTCCATGTGAAGGCTGCTGGGTTGTTATTTGTTGCTACAACTAGAGTCAATGTCTCCCCTTCT CTTGTTTTGGGGCTTTTGCAACGAATCGCGCGTGTTATCAAGGATTACCTTGGTGTTCTTAATGAGGATTCTTTTAGGAA GAACTTTGTGCTTGTGTATGAATTGCTGGATGAAATGATCGATTTTGGTTATGTGCAAACAACATCTACTGAACTTTTGA AGTCATATGTTTTCAATGAGCCAATTATGATTGATGCTGCGCGGCTTCCTCCCATGGGTCCTGCTTCCATTTTTATGCAA GGGACCAAACGAATGCCAGGTACAGCTATTACAAAATCTGTTTTTGCTAATGAATCTGGTGGTAAGAAGAGGGAAGAGAT CTTTGTTGATGTAATTGAGAAAATAAGTGTTACATTCAACTCTAGTGGATTTATACTTACTAGTGAGATAGATGGCACCA TTCAAATGAAGAGTTATCTTACTGGTAACCCAGAGATTCGACTTGCTCTCAATGAGGACCTGAGTATAGGAACAAGTGAT TATAGAGGTTCAGGTGCCGTGATTTTAGATGATTGCAACTTCCATGAGTCTGTACACCTTGATAGTTTTGATGTTGACCG AACTTTATCATTGGTACCACCAGATGGGGAATTTCCTGTCATGAATTATCGTATGACTCAACCATTTAAGCCACCCTTTC GTATTAATGCATTGATTGAAGAAACAGGACCCCTCAAGGCTGAAGTGACCATTAAAATACGTGCTGAATTCAACTCAAGC ATCAATGCTAATACAGTTCTTGTACAGATGCCACTACCAACATCTACGGCTCGTGTTAATTTTGAGTTAGAACCTGGAGC AGTTGGTCACACAACTGATTTTAAGGAAACAAATAAAAGACTGGAATGGGGCATAAAAAAGGTTGTTGGTGGTTCTGAAC ATACTTTACGAGCAAAACTGACACTTTCACATGAGTTTCATGGAAACATCATGAAAGAAGCAGGGCCTCTTAGCATGACT TTCACTATACCTATGTACAATGCTTCAAGGCTTCAGGTGAAGTACTTGCAAATAGCAAAGAAGTCAAAAGCACATAATCC ATACCGATGGGTTAGATATGTAACCCAAGCAAACTCGTATGTTGCTCGGTTGTAA
Protein sequence (LotjaGi1g1v0422200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMISQFFVLSQRGDNIVFRDYRGEVQKGSAETFFRKVKFWKEDAEGDAPPVFNVDGVNYFHVKAAGLLFVATTRVNVSPS LVLGLLQRIARVIKDYLGVLNEDSFRKNFVLVYELLDEMIDFGYVQTTSTELLKSYVFNEPIMIDAARLPPMGPASIFMQ GTKRMPGTAITKSVFANESGGKKREEIFVDVIEKISVTFNSSGFILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIGTSD YRGSGAVILDDCNFHESVHLDSFDVDRTLSLVPPDGEFPVMNYRMTQPFKPPFRINALIEETGPLKAEVTIKIRAEFNSS INANTVLVQMPLPTSTARVNFELEPGAVGHTTDFKETNKRLEWGIKKVVGGSEHTLRAKLTLSHEFHGNIMKEAGPLSMT FTIPMYNASRLQVKYLQIAKKSKAHNPYRWVRYVTQANSYVARL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 2 | 444 | 443 | 1.2E-283 | – | |
Pfam | 2 | 131 | 130 | 3.8E-5 | ||
SUPERFAMILY | 2 | 142 | 141 | 2.98E-36 | ||
PANTHER | 2 | 444 | 443 | 1.2E-283 | – | |
Gene3D | 2 | 144 | 143 | 1.6E-49 | – | |
PIRSF | 2 | 444 | 443 | 4.0E-112 | ||
CDD | 4 | 144 | 141 | 7.48949E-91 | – | |
PRINTS | 13 | 33 | 21 | 4.0E-29 | ||
PRINTS | 102 | 129 | 28 | 4.0E-29 | ||
CDD | 179 | 444 | 266 | 2.84144E-155 | – | |
Pfam | 182 | 443 | 262 | 9.1E-71 | ||
SUPERFAMILY | 182 | 443 | 262 | 2.22E-72 | ||
Gene3D | 183 | 439 | 257 | 3.6E-89 | – | |
ProSiteProfiles | 184 | 443 | 260 | 37.514 | ||
PRINTS | 249 | 276 | 28 | 4.0E-29 | ||
Gene3D | 291 | 443 | 153 | 3.6E-89 | – | |
PRINTS | 362 | 373 | 12 | 4.0E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. | ||
Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. | ||
Cellular component | Clathrin adaptor complex | A membrane coat adaptor complex that links clathrin to a membrane. |
Expression pattern of LotjaGi1g1v0422200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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