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LotjaGi1g1v0436100.2

Overview

Field Value
Gene ID LotjaGi1g1v0436100
Transcript ID LotjaGi1g1v0436100.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description 1,4-alpha-glucan-branching enzyme; TAIR: AT5G03650.1 starch branching enzyme 2.2; Swiss-Prot: sp|Q41059|GLGB2_PEA 1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic; TrEMBL-Plants: tr|X5CRZ1|X5CRZ1_LENCU Starch branching protein I; Found in the gene: LotjaGi1g1v0436100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:93034783..93040981) extracted from Lotus japonicus Gifu genome v1.2.

ACTTGTCTCTTCCCAGATAGTAATGACTAATGACCGGTCAAAGGGTTAGGGAATTAATGAAAATGAAATGAAGCATTTGT ACTGATGTGCTGTATGTTTAAAGAAAAATGAAAGTTTACATATCTTTATCTACATATGTGATGTGCTGCATGTGGATAAG TTATTTCAGTGTGCTTTCCTACAACCAGGTGAGCACTGGTTTCAAGGGCGTAGCTGTTATTACAGATAACAAGTCAGCAA TGTCTGCCACTGAGGAAGATTTAGAAAATATAGGCATCTTGCATATCGATCCAGCCATAAAACCATTTAAAGATCACTTC AAATGTAGACTGAAGAGATATATAGACCAGAAAAAGCTAATTGAAGAATATGAAGGAGGTCTTGAGGAATTTGCACAAGG TGATTGTAATTGCTGGCATTGTTTCCCTTCTATTTTCCCTTTCTATATATCTATGCCTACTAAGATTAGGTAACTACAAA TTAGATGTTCATGATAAAGCCGGGGTATTAATTGATTCTTGATAGTGAGTGTTAGTGGTAGTAGAGAAGTCATATTAAAT TGTCTGGCATGCACAAGCCAATCTAGAACACAATCAATTGATTATGTTGGAATGAAAACAATTTCATTTAACTATCAACT GTTATATTTCTGTTAAAATGCCTTACTAATTTATTGGCTGAGACTAGTTGCAGCTTCAATATAATGTTTCTTTTTGTTTT CCCTTCCCTCTTTTCTCTCAGGTTATTTGAAATTTGGATTCAACAGAGAAGAAGGTGGCATTGTGTACCGTGAGTGGGCA CCTGCTGCTCAGTAAGTTATATCAAACAACACAAATTAGTCATGTTCGTTGCCATTGTTCTATTCACTTTTCTTTTCAGA TTTCACATCTCTTTCAATGCAGGGAAGCACAAATTATTGGGGATTTTAATGAATGGAATGGTTCCAATCACCCAATGGAA AAAAATCAGTTTGGTGTCTGGAGTATTAAGATCCCTGATGTTGCTGGGAATCCAGCTATACCTCACAATTCTAGAGTGAA GTTTAGATTCAGACATGGTGGAGTCTGGGCTGACCGCATTCCGGCTTGGATTAAATATGCCACTGTAGATCCTACCAAAT TTGCTGCGCCATATGATGGTGTCTATTGGGATCCACCGCTTTCAGAGAGGTCCTGTTATTCACATATGTAGAATATCTGT TGACTTGTTATCCTCAGTAAAGAATTAAGCATAGCATTGAAGTTGAAGTATCAATACTAAAAGGGACTTCAATGTATGCA ACATATCAACTGATTTTAAAATTATGTGAATAATTTCTTTTTTAATTTTTTTATATGAATACATTAACTCAGTTCAAAAG AAATGATTAAAAATTGAATTATATTTTGGATCAAAATATTCTTAATTATTTCAATTAAATAATAAACGAATTTTCTCATC TCTGGGACATATATGGAATGGAAATATAACATGAAATAAGATTTCTTATTAAATAAACTAAATTTGTTTGCCAATGCATT ATACCAAATTCCTATCACATGTCATTATTTAAAATTGTCAATTTAAATCCTGATTGTTGAATGAACAAATAATGATTTCA AATCTGTGTTATGATAGAATTCATGTACAAATGCTAGGAGTTCCAGGTTTTTTCAATTCCTTATTCGATTTATATGACCG GTAATAAAAAGAAGCCTTTTCTGGGCTTATCTGTTTGATGTCTATATTTTTCCTCATTCCACCCTTGATTAAGTTTTGGT GAAATTATCTCAGCTGTTTGTTCACCCTCTTGTTTGTTTGGCAGGTATCAGTTTAAATATCCTCGTCCACCGAAGCCCAA GGCCCCGCGGATATATGAAGCTCATGTGGGAATGAGTAGCTCTGAGCCCCGCATAAACTCGTACAAGGAATTTGCAGATG ATATTCTGCCACGTATTCGGGCCAATAACTATAATACAGTCCAGCTGATGGCTGTGATGGAGCATTCCTATTATGCATCG TTTGGGTATCATGTAACTAATTTTTTTGCTGTGAGCAGTAGATCTGGAACCCCTGAAGATCTTAAATATCTGATAGATAA GGCCCATAGCCTAGGCTTACATGTTTTGATGGATGTCGTCCATAGTCATGCTAGTAATAATGTTACTGATGGACTTAATG GCTTTGATGTTGGCCAAGTTTCACAAGAATCATACTTCCACACTGGAGATAGAGGCTATCATAAATTGTGGGATAGTAGA CTCTTTAACTATGCCAACTGGGAAGTTCTTCGTTTCCTTTTATCTAATTTGAGGTGGTGGCTTGAGGAGTTCAAATTTGA CGGATTTCGATTTGATGGAGTAACATCAATGCTGTACCATCACCATGGAGTCAACATTGCATTTTCTGGGGATTATAATG AATACTTTAGTGAAGCAACAGACGTGGATGCTGTTGTCTATCTAATGCTGGCTAATTCTCTGATCCATAATATTTTGCCA GATGCAACTGTAATTGCTGAAGATGTTTCTGGCATGCCTGGACTTGGTCGTCCAATTTCTGAGGTGGGAATTGGTTTTGA CTATCGTCTAGCCATGGCTATCCCGGACAAGTGGATTGACTACTTGAAGAACAAGAAAGACCATGAATGGTCTATGAAGG AAATCTCTTTGAGTTTGACAAATAGGAGATACTCTGAGAAATGTGTGTCTTATGCTGAAAGTCATGACCAGGTATGAGCT TTTGATATTTTTATGTTAAGTGTTACTTTGTGATGGAAAAAATACTATAAGAATTTAGGTTAAACTAATTTGTGTTAGAA AATCGGGTGTGATAATCCTGGATAAAGTCAAGAATCGTGAGCGTCCACTTTCCGAACAAATTATTTCGACCCTGTAATTG CCTGGGTTCACGAAATCTTTGTTGGGATAATGCTTGACAGTCAATCTGTTTCTTGGCACAAGAGAACAGATAAAGAAAGT AGAGAGATGTTGTGTTGTTCGAATATCTGTTTCAGAATACTGTTTCTGGTTTTTTGTCTTCATTCCTTAGGCTGCAAGCA ACCTTATATAAGAGGCTGCACGAATGGTCACAACTGTTCGAAATTAAGTCACAACTTTTCAAACAATTTCAAACTAGGGT CACAAACGTTCAGAAAAAATTTCTAACAGCGGGACCCCAGCCAGGGGCTCCGCCCCTTGGACCCCGGTTCGTATTCGCGG TCAATTATGCATTGGCTCACCGAGCGTGCACTCCGCACTAACCTGACTCGATTCCGAGCCTAACGCATAATTGCATCAGC CTATAGTAGATCACATTACTACTAAAATACATTGATGATTCTAAAATCACCAACAATTTGTGAACAGGTAAATGATGGAA ACTACAGGGGACGAGTAATCGAGAATTTCTGTTATTTGATTTGTTTTTTAATGCCTGCACTATTATTGTTTATTTTTTTA TTTTTATTTTTGCTTTTGGCAGTCCATTGTTGGGGACAAGACTTTTTCATTTTTACTGATGGATGAGGAAATTTATTCTG GCATGTCTTGCTTGGCTGATGCTTCTCCTACTATCGAGCGAGGGATTGCTCTTCATAAGGTTGTTCATCTGACCATAAAG ACTATTGGACTACAATTATATAGAATTTGAATCATGAAGTTGATAATATATACATAATTAACGCTGCTTCATAATCTCCT TATAGTCATTGTTAATTTGTTATCTTAATATTTTGCAGATGATACATTTTATAACCATGTCATTAGGTGGAGAGGGCTAC CTTAATTTCATGGGCAATGAGGTATGCATATTGCATATTACGTAACTTCTGCTGCAAAAGTGCTGCTCACTGTTATTGCA TGTTGCAACTGACCTTTACCTTTTCATTGAATAAAAATGCATATTGTTCATGAAAAATGGATTCCTATGAGGTGATGTTT ATACAGGAATGAACTGAATGTTTCCTCTCTACTTTTTTCTTGTTCTTTTTTTGGTGGATGGGTTTCTCCTACGAGCTAGC CCCCTGTGAAATTATCTGCACATTATTTATTTCCAATAGCAGCTAAGCTGGAGATTGTCAAGCATCGCTCATTGCTATAA TTGTATACCATGTTATCACTTGTTAAATTGTACTCATGAGGCCATTTTTAGTTTGGCCATCCGGAGTGGATTGATTTCCC AAGAGAAGGCAATGGATGGAGTTATGAGAAGTGCAGGCGTCAGTGGAGTCTGGTGGATACAGATCACTTGAGATATAAGG TAATATATGTGTGTGTACATACTCAACGTATTGTGTTTATTCACTGGACACAGAACTTTGACATCTCTTTTGTTTGTGGC TTCATTTCTTGCGCAATTTTAACACCAATTGAGTCCTTAAGTGGATGTTATACCTGTATGAGTCAAGCTATCTTCTTTTA AAGATTGCTCACATTTGAACCTGATTCGGTAAAATAATCCACTTAGTCAAATTATAAAAGAAAATAATTCCTTGTTAATT GCGCTGAGCAAATATAAATATTTAAAGATACAATATGAAAATTTCCTCATTTACACTTTTTTCGAATACGATTTTAATGA AGATGACAAAAATGGTGTAAGCCGATACATGTAATTTGCATTTGAATCCTCATCAACTATGGACATTCATAAATTAAAAC TTCATTGGAATCTCTGTTTAGCTCTGAGTTCAGAATCTCCGTACGATATGCTAGGGCTTAAGTTAAAATGGGCCTTGCTC AAGAAATAATGTTAAAAATGGGCCTTGCCCTTGCATATTTTTGTGTGATGCTGTAGGCAACAGTGTAATCTGATTTTGTG GAGCTTCTTTTTTCCCCTAGTCGAGAACACTGCTTATTCTTTCATTCTTGCAGTTTGTTGCTTGTCTTTGAGATGTTATA TTTTTGTTTTTGGAATTTGTGCAGTTCATGAACGCATTTGACAAAGCTATGAATTTGCTTGATGATAAATTCTCATTCCT TGCATCAACAAAACAGATTGTGAGCAGCACAAATGAGGAAGACAAGGTGAATATAATTTTTGTAATATACTCATTCATAA TATGGTGTTTTTGCTACTTGCTAGTCAATTAGAGATTATTTATATTAAGACTGAGTGAAACAAGAATGCTTCCGAGAAAA TATACATCGGTATCGTGAACATCATGAAGTTGTTTCTGAAAATTAGCGATTTAAGAAGATAAAATCATTTACAAGCTATT GTCTTCTCTGAGTTAATCTCAAGTGGAACTCTATGCTATGTTATAATTAAATGCCTAATTTTTTTTCTTTTATAGGTTAT AGTCTTTGAACGTGGAGATCTGGTATTTGTGTTCAATTTTCATCCAGAGACTACATACGAAGGGTATGCAATATGTGTTC AATTTTCATGTTTGGGGAATTAATTTGTATCAGGTTGTGTGTCTGGTTTTATGTAAAGGTTTTATTAATATTTCTATAAT AGTAACTGTTAACCACAAATGATTTGGAAGAAACCTTGAACATACAGGTATAAAGTTGGATGTGACTTGCCTGGGAAATA TAGAGTTGCACTGGATAGTGACGCTCGGGAATTTGGAGGCCATGGAAGAGTAAGAAGCCCTAATCTTCACACAAGTATAA ATTGTTGTATTTTCCTCTGTGAGAGGTAGTGAGGGACAGAGTGCTGTGAGTGGCAGTGAGGTGTGGAGAACAAAAAGAAT GGGAGGGTGAAGGTGCTCATTACTATGTTATTCTATGGTTTTTGAATATGTTCCTTGTCATTTTTCCTGGTTATGCACTT GTGTCTAAGGTTGACCATTTTCCACTTCTAGGTGGGGCACAATGTAGACCACTTCACCGCTCCAGAAGGCATACCAGGAG TTCCCGAATCAAATTTTAATAATCGGCCCAATTCCTTCAAGATCCTCTCCCCTCCTCGTACCTGTGTGGTATGTTATCTC GTGCCTTTTAATATCTCTTTTATTTGCTTTTATCCGGTTTGATTGCATAACTTTTTATTTATTTATTTCAATGGTGGTTT AGAAGTTTGAATTTATGATTTCTGGCAAAACATCGTAACAAATCATGATTAACTCAAACCTTTTTACTGTATGTATGGCA TATTTTAATGCATAAAAACTTCTGTTGAGTTCCCCCCTAAATCTTCAATATCTATGAAAGACAAGTCAGATATGCAATAG TCACAGCTGAAGCTCAAATCTACCCTTGCTCCATGACAA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0436100.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTGCCACTGAGGAAGATTTAGAAAATATAGGCATCTTGCATATCGATCCAGCCATAAAACCATTTAAAGATCACTT CAAATGTAGACTGAAGAGATATATAGACCAGAAAAAGCTAATTGAAGAATATGAAGGAGGTCTTGAGGAATTTGCACAAG GTTATTTGAAATTTGGATTCAACAGAGAAGAAGGTGGCATTGTGTACCGTGAGTGGGCACCTGCTGCTCAGGAAGCACAA ATTATTGGGGATTTTAATGAATGGAATGGTTCCAATCACCCAATGGAAAAAAATCAGTTTGGTGTCTGGAGTATTAAGAT CCCTGATGTTGCTGGGAATCCAGCTATACCTCACAATTCTAGAGTGAAGTTTAGATTCAGACATGGTGGAGTCTGGGCTG ACCGCATTCCGGCTTGGATTAAATATGCCACTGTAGATCCTACCAAATTTGCTGCGCCATATGATGGTGTCTATTGGGAT CCACCGCTTTCAGAGAGGTATCAGTTTAAATATCCTCGTCCACCGAAGCCCAAGGCCCCGCGGATATATGAAGCTCATGT GGGAATGAGTAGCTCTGAGCCCCGCATAAACTCGTACAAGGAATTTGCAGATGATATTCTGCCACGTATTCGGGCCAATA ACTATAATACAGTCCAGCTGATGGCTGTGATGGAGCATTCCTATTATGCATCGTTTGGGTATCATGTAACTAATTTTTTT GCTGTGAGCAGTAGATCTGGAACCCCTGAAGATCTTAAATATCTGATAGATAAGGCCCATAGCCTAGGCTTACATGTTTT GATGGATGTCGTCCATAGTCATGCTAGTAATAATGTTACTGATGGACTTAATGGCTTTGATGTTGGCCAAGTTTCACAAG AATCATACTTCCACACTGGAGATAGAGGCTATCATAAATTGTGGGATAGTAGACTCTTTAACTATGCCAACTGGGAAGTT CTTCGTTTCCTTTTATCTAATTTGAGGTGGTGGCTTGAGGAGTTCAAATTTGACGGATTTCGATTTGATGGAGTAACATC AATGCTGTACCATCACCATGGAGTCAACATTGCATTTTCTGGGGATTATAATGAATACTTTAGTGAAGCAACAGACGTGG ATGCTGTTGTCTATCTAATGCTGGCTAATTCTCTGATCCATAATATTTTGCCAGATGCAACTGTAATTGCTGAAGATGTT TCTGGCATGCCTGGACTTGGTCGTCCAATTTCTGAGGTGGGAATTGGTTTTGACTATCGTCTAGCCATGGCTATCCCGGA CAAGTGGATTGACTACTTGAAGAACAAGAAAGACCATGAATGGTCTATGAAGGAAATCTCTTTGAGTTTGACAAATAGGA GATACTCTGAGAAATGTGTGTCTTATGCTGAAAGTCATGACCAGTCCATTGTTGGGGACAAGACTTTTTCATTTTTACTG ATGGATGAGGAAATTTATTCTGGCATGTCTTGCTTGGCTGATGCTTCTCCTACTATCGAGCGAGGGATTGCTCTTCATAA GATGATACATTTTATAACCATGTCATTAGGTGGAGAGGGCTACCTTAATTTCATGGGCAATGAGTTTGGCCATCCGGAGT GGATTGATTTCCCAAGAGAAGGCAATGGATGGAGTTATGAGAAGTGCAGGCGTCAGTGGAGTCTGGTGGATACAGATCAC TTGAGATATAAGTTCATGAACGCATTTGACAAAGCTATGAATTTGCTTGATGATAAATTCTCATTCCTTGCATCAACAAA ACAGATTGTGAGCAGCACAAATGAGGAAGACAAGGTTATAGTCTTTGAACGTGGAGATCTGGTATTTGTGTTCAATTTTC ATCCAGAGACTACATACGAAGGGTATAAAGTTGGATGTGACTTGCCTGGGAAATATAGAGTTGCACTGGATAGTGACGCT CGGGAATTTGGAGGCCATGGAAGAGTTGACCATTTTCCACTTCTAGGTGGGGCACAATGTAGACCACTTCACCGCTCCAG AAGGCATACCAGGAGTTCCCGAATCAAATTTTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0436100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSATEEDLENIGILHIDPAIKPFKDHFKCRLKRYIDQKKLIEEYEGGLEEFAQGYLKFGFNREEGGIVYREWAPAAQEAQ IIGDFNEWNGSNHPMEKNQFGVWSIKIPDVAGNPAIPHNSRVKFRFRHGGVWADRIPAWIKYATVDPTKFAAPYDGVYWD PPLSERYQFKYPRPPKPKAPRIYEAHVGMSSSEPRINSYKEFADDILPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFF AVSSRSGTPEDLKYLIDKAHSLGLHVLMDVVHSHASNNVTDGLNGFDVGQVSQESYFHTGDRGYHKLWDSRLFNYANWEV LRFLLSNLRWWLEEFKFDGFRFDGVTSMLYHHHGVNIAFSGDYNEYFSEATDVDAVVYLMLANSLIHNILPDATVIAEDV SGMPGLGRPISEVGIGFDYRLAMAIPDKWIDYLKNKKDHEWSMKEISLSLTNRRYSEKCVSYAESHDQSIVGDKTFSFLL MDEEIYSGMSCLADASPTIERGIALHKMIHFITMSLGGEGYLNFMGNEFGHPEWIDFPREGNGWSYEKCRRQWSLVDTDH LRYKFMNAFDKAMNLLDDKFSFLASTKQIVSSTNEEDKVIVFERGDLVFVFNFHPETTYEGYKVGCDLPGKYRVALDSDA REFGGHGRVDHFPLLGGAQCRPLHRSRRHTRSSRIKF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF000463
1 674 674 5.4E-214
IPR037439
PANTHER
PTHR43651
1 651 651 0.0
IPR037439
PANTHER
PTHR43651:SF2
1 651 651 0.0 –
Gene3D
G3DSA:3.20.20.80
17 578 562 1.2E-280 –
SUPERFAMILY
SSF81296
51 161 111 5.95E-20
IPR014756
Gene3D
G3DSA:2.60.40.10
53 166 114 1.2E-280
IPR013783
Pfam
PF02922
57 139 83 1.6E-19
IPR004193
CDD
cd02854
64 159 96 4.95222E-44 –
CDD
cd11321
164 571 408 0.0 –
SUPERFAMILY
SSF51445
167 573 407 1.77E-86
IPR017853
SMART
SM00642
202 562 361 2.2E-6
IPR006047
Pfam
PF00128
227 295 69 1.0E-10
IPR006047
Gene3D
G3DSA:2.60.40.1180
585 674 90 6.3E-33
IPR013780
SUPERFAMILY
SSF51011
587 651 65 6.55E-18 –
Pfam
PF02806
591 651 61 4.7E-19
IPR006048

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0003844
Molecular function 1,4-alpha-glucan branching enzyme activity Catalysis of the transfer of a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxyl group in a similar glucan chain.
Subterm of
GO:0004553
Molecular function Hydrolase activity, hydrolyzing O-glycosyl compounds Catalysis of the hydrolysis of any O-glycosyl bond.
Subterm of
GO:0005975
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Subterm of
GO:0005978
Biological process Glycogen biosynthetic process The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues.
Subterm of
GO:0043169
Molecular function Cation binding Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0436100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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