Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0467700 |
| Transcript ID | LotjaGi1g1v0467700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase family; TAIR: AT3G61180.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680; TrEMBL-Plants: tr|I1L6R5|I1L6R5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0467700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:97760165..97765387) extracted from Lotus japonicus Gifu genome v1.2.
AAAGTAGTTCAGTTGGCAACGCAGGCGAGCTTTTGGATTCGATCCCCACACAATACACTTTAGGGAAGGGATGATGAATC TTAACTGTAACTAGATCCCGAATCTACCGACATACCAAGGATGGCCAGTACCCGACGTTTATAAAAAAAATTACATGTTT TGTGAGAAGAGGGTGTAGGTAGTAGTAATATTTTATCCAAATCAGGGTGATACTTATTTCTTAGCACTCAAGAATTCACT AGAACTCATCAAAGATCCATCTTTTAGTTTCTTTCAATCCACTGTTTTTTCCACCAAACCCACTTCAAAATGCACACTTC AAACCCACCTTCTTCCTCCGCCGCCACCGTCGACTCCGAGCCGTTCCTCCTCCGTAGCCGCCGCTTCCTCCGCAGCGCGC CGCCTCCTCCTCTCCGCACCGCCGCAAGGTACTTCCGGCAGGCTAGCGGGCGGCGGATGATGCTGCGGGAGCCGTCGGTC CGTGTCCGGGAGGCGGCGGCTGAGGAGGTGGAGGAGCGGCAGAGCGAGTGGGCGTACTCGAAGCCGGTGGTGGCGCTGGA CCTGGCGTGGAACTTGGTGTTCCTTGCTATTGGGGCCACCGTGCTGGGTGTGAGCACCAAGGAGGAGCCATGCGTGCCCC TCAGGGTGTGGATTGTTGGGTACTTGTTGCAGGGTCTGCTTCACTCTGTGTGTGTTGTCTTTGAATTCAGAAGAAAAAGA AGAAGGGAATTAGGGGCTTCTTCTTCTTTTTCTTCTTCATCTGGTTTGGAGCATGATAGAAGATGGGAGAGTGCTGCTAT TCAATGGAGTTATAGTTCTGAGAGTGATGGTTCTTCAGAGCAGCTTCTCCAGACTGAGGAAAACAGGTACACCTCTTTCA ATTTCAATATTCTTGTTGTTTATCTCCTTTTTTTGTGTGGATGGTTAATTAGTTTGCATTTCTCTTCCTTTGTGTAGAAA ATTAGTATAATTGGTGGAAACTTGTTAGCTGGGAAGGTAAAATTGTGAAAAGGCAACATTAGATGTCATTTTGAGTATGG GTACTTGATTTCCTGTTTCTATTTGTTACAACTTACAACCCATTTGATGGTGAACCCTTTGATTCATAGTAATTCTGAAT CCTTGTGAAACTTCCTCTTAGTATTATTCTTTGTTATTTTCAAGATATATAATACATTTAGTAATTTACTTTTTCATTTC ATGCTAACTTCATGAATAGTTAGGAGCAGTACCTTGATCGAGGATATAGCTTTAGAGCGTGTTTGGATAGAGGCCCAAGA GCCCTTATTGAAGCTTATTTACTAATAAAAGCACTGGGCTCCAATAAGTTCTCTTTGGTCTGCATACAAACGGGTTCTTA ATCTCTGGTTTCATGGAATAAAAAATGAAGTTGGGTGTTGAAATATAATAATGCTGTGCATACTTTTGGTTTCTGGAAAC ATTACTCCAAGTCTATACAGTTTCCACCAACTGATAACAGCTGGTTACATCTTGTTTTCTTCTCGCTGGGCTCTAATTTT TCCCACCTACCTCCTTTATGTGAAGAGTTGTGTGCCTTGACGATGTGCAAGGAGCATATTTTGGGGCATGCTTGGTTAGA GTGATAGTGGATGGAAGAAGCAGAGAGGGTAGAAATGAAAATTGCCAGTTGTTGGTTTTGATAATTCAATATACGCATTG CATGTCTTGATACTATTGTCAATTTTCATTACTTCTCCCTTCTGCTCCTTCTGATTTGACCTCACCGCTTAATTATGCTG ATAATTGAGAGTGTCTTGATGTGAGTGCAGTTTATGCTTTGGTATATTTAGCATTTAAGGTTGAGTATAGAAGCCTTACG GTTTTGACTTTATACCACAAGTTGATAAATTGTATTGTTCATTATTTTGTCAGCATCACGAAACACATTGAGTCTGCAAA TACCATGCTTTCATTCATATGGTGGATTCTTGGGTTCTACTGGGTTACTGCTGGTGGCCAGAGTTTGACAAGGGATTCAC CTCAGCTTTACTGGTTAGTTGGAACATAGGACAATAGCTATTGATTAATTTGTTCTCTTAAATCTTTATGCATTCATCCC GTATTATGCCTTGCCTAATATGTAACTCTCTTGTATGTTGTGTTCTGCAGGCTCTGTATTACGTTTCTTGCTTTCGATGT TGTGATTGTACTGATCTGTGCTGCTGTTGCATGTTTTATTGGCATTGCCGTCTGCTGTTGTCTACCGTGCATACTTGCTC TTTTGTATGCGATGGCGGATCAAGTACATAAGCTTTTCCCTTATTTTATTGTTTGTCCTAGAGGTTATTTTGAGATAATT GATATTTTGCACCTATATATTTCCAAGATATAATTGAATTTTGTAAACAAGTAGCCAGTGGTCAATATTGTCAGTCTGTA GCAATAGAGGCAAAATCCAATTTCCAATTGATGGTTGAAATTGATACATCTTGCTTGTGTATCTTTGAAACTTCAAATAT ATTAGCTGTAAAAAATAGTTTTTCTTTCAATTTTTTTCCATAGGAGATCTACAAAGAATTGTGGGCAATTCTTCCGAATT TTGAATTGGTATTTACTATATTTCTCACTTTGCACTGTGATTTGGTAATGGGGAAATACAGTCAACTCTGATGAAAGCAT GCCAGTTAGAAAGAAAGTTCAATGCTTTCAGGCTTCAGCGGCATATTTAGGAGTATATCCATCCTGAACTATAGGTTTTT TGTTATTGCACTATGTATATTTTTATTTGTTGTTAGAATCCGTGCATTTTAAAGTTCATCCTAGTTTAACTCTTCTCTGT GATTTCATGCCAACTTTTATGCTATTGCTGGCCGATATTTTCATCGTCAACCAAAGTATGAAGTGTCTCCTCTTGAAGGT TTAAATTTGAAGTTCTTTTACTAACTGTTGAGAAGTCTCACATTGACTAGAGATATGACCAAGATAGCCCTTATATATGA GAAGACAATCCCCACCGCTTGAGCTAGTTTTTTGGGCTAGTGTTTAGTCCTCCTAAATTCTAATATGGTATCAGAGCCTA TCCTATATCCATTTAGCGGAGACCACCCTCGTCTATGAGCCACCTGAAGATGTTCATTCCTGCATATTCTATGCTCTAGA TGTCCAACCATGAGCGTGTGTTGAGACGTCCCGCATTGACTAGAGATATGGTTAAGATAACCCTTATATATGGGAAGACA ATCCTCACCTCTTGAACTAGCTTTTGGGGTAGAGTCAAACCTCCCAAATTCTAATACAGTCTCTTAGAATATCTAGAGAC TAGCTCATATTGTCTTGGTGATTTCTTAGGAATGGTTTTCATATTTCATGATTCATTTGTGTTATTTAATTAGTATCATG AATCTAGTGTAAGTACAAAAGCTGTTGTGTGTCATATTTTTGTAAACATCATTGCTCATCATATATCAATTATGTTCTAT TTATTATTCAATTTTTGTGCCCTCTTTATCCTTCTCTACCTGAATTCCTATAATTTTAACTGATTCATTAACCATAGCTG AGTTCAAACATAATTTATTTGTAATTTTACCATTCCCGTTCTTGCAATTACACTTATCATAATCTTTTTTCAACTTTTGT CAGACTTAATTTAACCTTTTATGTGGGAACAGGAAGGGGCAACCGAGGAAGAAATCGACCAGTTGCCAAAATATAAGTTC AGAATGATAAAGGAATTTAAGAAAGAAGGCGATATCCAAGAATCTTCCAGTGGAGTAATGACAAAATGTGACAGTGATAC AGCTGCTGAGCATGTTATTGCCTTAGAAGATGCAGTAAGTTCCTAACTTATTAAATAAGGATTATGTAATCTTAAAAAAT GCTGTGCTTTGAAACACCATGTTTTTATCAGTATCTGCAATTATTCATGGCTTGGTCCTAAAGCCTAGGCTTATGAATCA TTTCTAGGTGTGTTTTTGAAATTATGTGTGTTTAATGCCAATTGTGAAATGATCCATGAAACAGTTATTTAAATCCAGTT TCTACCTATAAGCTATGTAATTGTAGTAAGTGTATGTTTACAAATCCTTCTACAATTGATTCTAAAGCCATAATCAATTT TGGGGAGAAGCTTGTAAGTATCTTCTAGGTTCTATGATTGACTTTACTGAAAGAGAAGCTGATCCAAACATGCTAAATTC TTGTGCAAACTTTTCCTCATTTGATACCTTCAAAATCATATCTGAACAGTGGCATGGTAAACTATTGTTATGGATTGTAC TTTTCACCTCTGCAAGTTGGGGACATATTACTTGTTTTATGCTTAGCATGCTGTGCGCCTGTGCCTACCATCGTGTATAT TCTTATGCATGTTTGGGAATTCTACTATAATTGATTTTAAAGTCAAAATCAATTCTGGTAAGAAGTTTATCTGAGTAGCT TTTAGGTGCTAGAATTGATTCTAACGAAATAGAAGCTGACCCAATCGTGCACTCACTTTCCCAACTTTCCTACTGCAAAA TTCAAATATGGTTAACAAATCCCGCTTCTGACATGAATGTTTGTGGTGAATAACAGGAATGCTGTATCTGCCTTTCTGCC TATGATGACGGTGTTGAACTCAGACAACTTCCTTGCAACCACCATTTTCATCGCACATGCATTGACAAATGGCTGCTAAT CAATGCTACATGCCCTCTCTGCAAATTCAACATTTTGGAGACTGGAAACCTCCATCAAGAAGTTTGAACTCGTTACTTGT TGCATTGATTAGAAGAGCACAATCCTTTTCACAGCAACAACTCACTCTGTTGCAAGCAGCACTAGATTGGCATCATCCTT TTTTTCTGTGATCAGCAGTGTTTATTTCTCACCTAACCATATTGGGAACAGTTTGTTTCCATGAATATACATACATAAAG AATATGAGTCATCTCAGTTTAGCTCATAACATGACCATATATACACAATATCCTATTTTAGGGATCAGGTTTCTTGCATA AGTCCCACCTATTGTGTACAACTGTATATCTCTTAAAGTGTGACAATGTCATGTAGCTAGAGTGAAAATATCCCAATCCG TGTACAAATATTGTTATTGTAATCATTTTACTATTGCGAAATGTGAGTGCCATATTCAAATCGATCTCTCAGAAGTGTGA TATAACCCGGCAAGAATAAGAAGAAAGTTGGTATTAATCAAGAATAGAAAACCATAAAGTTGCTGATTAATTCGAGAGTC CAAGCACCTCTCCCTAAATCCCA
CDS sequence (LotjaGi1g1v0467700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACACTTCAAACCCACCTTCTTCCTCCGCCGCCACCGTCGACTCCGAGCCGTTCCTCCTCCGTAGCCGCCGCTTCCT CCGCAGCGCGCCGCCTCCTCCTCTCCGCACCGCCGCAAGGTACTTCCGGCAGGCTAGCGGGCGGCGGATGATGCTGCGGG AGCCGTCGGTCCGTGTCCGGGAGGCGGCGGCTGAGGAGGTGGAGGAGCGGCAGAGCGAGTGGGCGTACTCGAAGCCGGTG GTGGCGCTGGACCTGGCGTGGAACTTGGTGTTCCTTGCTATTGGGGCCACCGTGCTGGGTGTGAGCACCAAGGAGGAGCC ATGCGTGCCCCTCAGGGTGTGGATTGTTGGGTACTTGTTGCAGGGTCTGCTTCACTCTGTGTGTGTTGTCTTTGAATTCA GAAGAAAAAGAAGAAGGGAATTAGGGGCTTCTTCTTCTTTTTCTTCTTCATCTGGTTTGGAGCATGATAGAAGATGGGAG AGTGCTGCTATTCAATGGAGTTATAGTTCTGAGAGTGATGGTTCTTCAGAGCAGCTTCTCCAGACTGAGGAAAACAGCAT CACGAAACACATTGAGTCTGCAAATACCATGCTTTCATTCATATGGTGGATTCTTGGGTTCTACTGGGTTACTGCTGGTG GCCAGAGTTTGACAAGGGATTCACCTCAGCTTTACTGGCTCTGTATTACGTTTCTTGCTTTCGATGTTGTGATTGTACTG ATCTGTGCTGCTGTTGCATGTTTTATTGGCATTGCCGTCTGCTGTTGTCTACCGTGCATACTTGCTCTTTTGTATGCGAT GGCGGATCAAGAAGGGGCAACCGAGGAAGAAATCGACCAGTTGCCAAAATATAAGTTCAGAATGATAAAGGAATTTAAGA AAGAAGGCGATATCCAAGAATCTTCCAGTGGAGTAATGACAAAATGTGACAGTGATACAGCTGCTGAGCATGTTATTGCC TTAGAAGATGCAGAATGCTGTATCTGCCTTTCTGCCTATGATGACGGTGTTGAACTCAGACAACTTCCTTGCAACCACCA TTTTCATCGCACATGCATTGACAAATGGCTGCTAATCAATGCTACATGCCCTCTCTGCAAATTCAACATTTTGGAGACTG GAAACCTCCATCAAGAAGTTTGA
Protein sequence (LotjaGi1g1v0467700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHTSNPPSSSAATVDSEPFLLRSRRFLRSAPPPPLRTAARYFRQASGRRMMLREPSVRVREAAAEEVEERQSEWAYSKPV VALDLAWNLVFLAIGATVLGVSTKEEPCVPLRVWIVGYLLQGLLHSVCVVFEFRRKRRRELGASSSFSSSSGLEHDRRWE SAAIQWSYSSESDGSSEQLLQTEENSITKHIESANTMLSFIWWILGFYWVTAGGQSLTRDSPQLYWLCITFLAFDVVIVL ICAAVACFIGIAVCCCLPCILALLYAMADQEGATEEEIDQLPKYKFRMIKEFKKEGDIQESSSGVMTKCDSDTAAEHVIA LEDAECCICLSAYDDGVELRQLPCNHHFHRTCIDKWLLINATCPLCKFNILETGNLHQEV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 79 | 79 | - | – | |
| PANTHER | 7 | 376 | 370 | 7.2E-181 | – | |
| PANTHER | 7 | 376 | 370 | 7.2E-181 | – | |
| TMHMM | 79 | 101 | 23 | - | – | |
| Phobius | 80 | 101 | 22 | - | – | |
| Phobius | 102 | 112 | 11 | - | – | |
| TMHMM | 111 | 133 | 23 | - | – | |
| Phobius | 113 | 131 | 19 | - | – | |
| Phobius | 132 | 193 | 62 | - | – | |
| Phobius | 194 | 212 | 19 | - | – | |
| TMHMM | 198 | 217 | 20 | - | – | |
| Phobius | 213 | 223 | 11 | - | – | |
| Phobius | 224 | 257 | 34 | - | – | |
| TMHMM | 232 | 265 | 34 | - | – | |
| Phobius | 258 | 380 | 123 | - | – | |
| Gene3D | 273 | 374 | 102 | 2.2E-18 | ||
| SUPERFAMILY | 315 | 373 | 59 | 2.22E-20 | – | |
| Pfam | 325 | 367 | 43 | 1.2E-13 | ||
| CDD | 325 | 369 | 45 | 4.3097E-21 | – | |
| ProSiteProfiles | 326 | 367 | 42 | 12.578 | ||
| SMART | 326 | 366 | 41 | 5.6E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0467700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…