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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0469600 |
| Transcript ID | LotjaGi1g1v0469600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal RNA small subunit methyltransferase A; TAIR: AT1G01860.1 Ribosomal RNA adenine dimethylase family protein; Swiss-Prot: sp|O65090|DIM1C_ARATH Ribosomal RNA small subunit methyltransferase, chloroplastic; TrEMBL-Plants: tr|I1N3K9|I1N3K9_SOYBN rRNA adenine N(6)-methyltransferase; Found in the gene: LotjaGi1g1v0469600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:98010874..98015223) extracted from Lotus japonicus Gifu genome v1.2.
ACAAGATACCACTAAATTACTTCAACTATGAAATAATTAGAATCGCTTTTAACTTATTTTATCATAATTTGATTCTAATT CTATCATACTGAAATCAGATTTCTACAATTCTACTTATATGAAGAGATTGTAACGAGAATAACGAACAACGGAAAAACAT GTTTCCTTCAGCGCTATGCTATCTTCAAACGCTCCCGCCAATACCCAACGCCACAGCGCTTAACCACCACCGGGAACCGC CACCAACAGTACCATATAGCACCGCCGGCGCACGGCGCCGAAGGCTACACGTAGTGTGTGCTGGCGGAGGCGGCAGGCCT TCAACACGAAGCGCAGACGATTACAATGCCACTCTCAGAGCTCTCAACTCCAAAGGCAGATTCCCCAGAAAATCTCTTGG CCAGGTTTCTCTCATTTTGGATTACCCATTGTCTTTAAGCTCTTCAAAATCCATTTTTTTATTCACATTTCATTTTGGAA ATGGTTGGGATGCTTCGTTGTGGCATTTTATCGAACAGGGGGTGGGTTTGATGATGGGGCTCAACAAAATCTGATTTTTT AAGTGATTTTGTTGTTGTTTGTAAGTGATTTTTTGTAGTGGGGTTGCTGGTGTGAGCTGAATTTTGTGTTTAGGTACTCC AAAATCTGATTTTTTTTCTTTGCTTCTGAAATTTGTGCTCATTTGGGTGTTTATGTGATTTGCAGCATTATATGTTAAAC TCTGAGATAAATGAGCAACTTGCTGGGGTGGCTGGTATTCAACAAGGTGATGTGGTATTGGAAATTGGACCCGGAACTGG TTCGTTGACTAATATTCTTTTAGACTCGGGCGCATTCGTTCTTGCGGTTGAGAAGGTTTGCTAGTTTTCATTTGTAGAAG TGTAAAACTACACTCAATAAGATACACACCCTCATGCTTTCCTTGACTTGTTAGTTTCTTTGCAGTTTATCTACATGGAG ACAGTTAGTTGTACTTGTACTTGTACATGTTTGCATGTATGGATGCATGTAATGGGTGTATTTGTGTCATTTTGTTGATG TGGTTCAGGATAAACACATGGCTGCCCTGGTGTGTGAAAGATTTTCAAGTACAGGAAAGCTGAAGGTAAAACTCATTGTG AATTTGAACTTTATATTGTGTGCCCGCAGTCTTCTTGATGAGATGCAAATTAGGTTTCTTGAGAATTGCAACATGATTCA CTAACCAAGATACAAAATTAAATATGCACGATATAGTTTTGCTATCTGATGTTGGTTGACATTGAAATCTAGTTACTTAA AGTCCTAACCAAGGTAATCTTTTCTTGACATACATTACATGATGGGAATTACTAGTACTCCTTGTTTTGCCTTCGTTGTT GGAGTCAGAGTTTGGAACTATATTTACTATCCGATAGGGATGCCATCTTCACTTCCCTTTGTTGATTGTTCAATAGTTTT TCCTCAGTTTCTTCTTATTGCAATTAAAAGATCTTATGTCACACCCTGTTCTTTCTCTGCAATTCTTGTTTCATTATATT ACTGGACAAAAAAATTCTTCTTTAGATACTAATTTAGGACTAGGTTGCCTCATGAATAATGATTAGTGTTGACCTGTTGA TAAAATATGTGCAGGTTCTGACTGAGGATATTGTCAAATGTCATGTGCGCTCTCACATGTCATCATTGGTTGGAAGCACA AAGCAAACAGATCCAGAAACTAGAAATGCAAAAGTGAGAACTCTATTTCCCAAGTCAGCAAACGACATTATTTTGTCATT TGACCTAATACATCTGATTCATTTTGTTTATATGAATAAAAATAATAGGTAATGCTTTGGTTTTATGATTTCTATCGTCG AAATTAAGTTTGAAGCTTAAGCCTTAGAAATTACAATTGCTTGGTAGTTATTTGATGGCTTAATTTCATGGGCCATAAAT TAGGTAGCAATATATGATGTTTTGGTATTTTGCTCTGCAAACAAACTTTGCAAGATCATGCTAGAAAATATGTAACTTAT TGTAAATCCTAAATTGGTATGTTGTTTGCAGGTGGTTGCCAACATTCCCTTCAATATTAGTACAGATGTGGTCAAACTGC TACTTCCAATGGGTGACATTTTCTCAGAAGTGGTTTTATTACTCCAGGTTAGAATTGTTAGCTCTCTAGTTCAGTGTACA TTTATTCTCTCCTTTTAGATTTGTTATTATTCCCTGTGAAGGGCATCTTGAATACTGTGTTACCGATTTTTCCGTTTCAA TTCTTCATTCCCAATTGAAATCCACCACAGAAGTGCTAATATAAGAATGCTATCAGCATGACAGCATCTACAGAAGAAAA TTACAATAGATTTGTCTTTATCCAGTTTCTATTTTTTATCTCACTTCACTCCACTTTAAAAATGACAAAGGATCAACCTA ATGGAATGAGATTAGAATTTTCAATGATAAGGGAAACTTAATGTAATAACAATTATTGACTAAGTCACTAAACAGATCAA ACTCTTGCAGGAGGAGACTGCCGTGCGCTTGGTAGTGTCGTCACTCCGAACCTCTGAGTATCGTCCAATCAATATATTCG TTAATTACTACTCAGGTCCATACTTAATAGTCAAGTTTTATGTTAATGACTTTGATTGTGGTTTCATAATAAATTACTAA CACATCAAATGCAACTTCAGATTTAGCTATCCCTACAACTTGGTTTATTTTATGCTGAAAGTTCTGAATTTTCTTTGCAG ATCCTGAGTATAAATTTAAGGTCCCAAGAGCAAATTTTTTCCCACAGCCTAATGTAAGTGATAGGTATTTAAATGTTCCC GTATGATCTTTTATTGTGGCATTTTGTTTTTCTGCAATAAAAAACAGATATACTAAAGTATCTTCTACTAAAAGCTTTGC TAGTCCATATCCCCATGTGATTTAGTTAGGATAATCCAGTATATATGAATGAGAGTCATCGCTTGTATGTCTGATTCTAT TGAAATCAAGAGATGAAAGTAGGTGATATCCTATGAAGCAACTCGTTTGCAAGAAAGTGAAAAACATTACTGGTGATGAA AGTAAAGAAAATCATTTCATATCACTGTCGAAAACAATGAAAGTAAAAAATGTCAAGCAGGGTTTATGGTCATCCCCTGT ATATTACATAACTGAAGCTTTTGTGGATAGAAAGAGAAGATTAGTCTTGATTAGTTTTCGTGCTTTGTGTAGGTTGATGC AGCTGTTGTCTCATTCAAGCTAAAGCTACCATCAGAATATCCCCAAGTTTCTTCCAGTAAAAGCTTCTTCTCGATGGTAA CTATTTCTCCACTATGTACTGTCATGCATTAAGTTTCCAAGGGTTTTCATCTTTAACTTCTAGCATATTTGGAACAGCTT CTCTTTCATTCTAAAACCCAAAAGCTACTCACATAAGTGTCTCCCCAAATTTGATTCCGGCTTCAGAATCAATTGTAGAA GGATTCTCAAGCATGCACTTCTTTAGAAATCTTATTGCACGGAAAGTTCTCATCATCATGCATTAATTACCGAGTATTTC CATTTGCTGCTGTTTTCATCTTAGTTAGCTACTGTAATCTGAGATACTTTTACACACCTCTTTCACCATTTAAATGACAC TATAATTCTACATACTTATAGGTTAATTCAGGTTTCAATGAGAAGCGAAAGATGCTGCGCAAGTCACTTCAGCACATATG CACATCCCTTGAGATAGAAGAAGCTTTAAAAAGCCTAGGTCTTCAACCTACCGTAAGTGATCACTGAACCTCATCTGTTT TGGTATTTTGTTTCTCAAGTTGCTGATCCATCTCTTCTTCTGATGCATACAGTCAAGGCCTGAAGAACTAACATTGGACG ATTTTGTTAAGCTGCATAACTTGATTTCCAAAGAGTAGTGATCTGGATTACTGTGCAATTGAACAGATAAACAGAAATCT CTACAGAAGGCCCTAGAGATTCCCATAATTCATTAGGTTCCTTGTTGCTGCAGATATACGGTTCAGAAGTTATAAGGAGA ACTATGGTATGAGGTATCTCATGCTGGGGTTATATTAGATTACAAGTTTTCTTGTACTAATGTTGCAAGGATAGGGGCAT GTTCATATCTGAAAGAAAAAATGCAGATTGAAACCCCATATGTAATATGTAATGTTATTAGAACAAACTTTCTTGTGTTG TGTACTAGTGTATATAATCTTGTAAGTTTCACCGCCATGAAAGGCAGTTTTATCTATTCCTGAAGCTGAAACATGTGCTT GCCAATACCATCAAGGAAAAATGAACACAATTTTCATTTCAATTCGTATATTAATTCACTAAACAGCTAGCGAATATGGA CTCTCGGGGTTAAGGGAATTCATAAATTCA
CDS sequence (LotjaGi1g1v0469600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTCCTTCAGCGCTATGCTATCTTCAAACGCTCCCGCCAATACCCAACGCCACAGCGCTTAACCACCACCGGGAACC GCCACCAACAGTACCATATAGCACCGCCGGCGCACGGCGCCGAAGGCTACACGTAGTGTGTGCTGGCGGAGGCGGCAGGC CTTCAACACGAAGCGCAGACGATTACAATGCCACTCTCAGAGCTCTCAACTCCAAAGGCAGATTCCCCAGAAAATCTCTT GGCCAGCATTATATGTTAAACTCTGAGATAAATGAGCAACTTGCTGGGGTGGCTGGTATTCAACAAGGTGATGTGGTATT GGAAATTGGACCCGGAACTGGTTCGTTGACTAATATTCTTTTAGACTCGGGCGCATTCGTTCTTGCGGTTGAGAAGGATA AACACATGGCTGCCCTGGTGTGTGAAAGATTTTCAAGTACAGGAAAGCTGAAGGTTCTGACTGAGGATATTGTCAAATGT CATGTGCGCTCTCACATGTCATCATTGGTTGGAAGCACAAAGCAAACAGATCCAGAAACTAGAAATGCAAAAGTGGTTGC CAACATTCCCTTCAATATTAGTACAGATGTGGTCAAACTGCTACTTCCAATGGGTGACATTTTCTCAGAAGTGGTTTTAT TACTCCAGGAGGAGACTGCCGTGCGCTTGGTAGTGTCGTCACTCCGAACCTCTGAGTATCGTCCAATCAATATATTCGTT AATTACTACTCAGATCCTGAGTATAAATTTAAGGTCCCAAGAGCAAATTTTTTCCCACAGCCTAATGTTGATGCAGCTGT TGTCTCATTCAAGCTAAAGCTACCATCAGAATATCCCCAAGTTTCTTCCAGTAAAAGCTTCTTCTCGATGGTTAATTCAG GTTTCAATGAGAAGCGAAAGATGCTGCGCAAGTCACTTCAGCACATATGCACATCCCTTGAGATAGAAGAAGCTTTAAAA AGCCTAGGTCTTCAACCTACCTCAAGGCCTGAAGAACTAACATTGGACGATTTTGTTAAGCTGCATAACTTGATTTCCAA AGAGTAG
Protein sequence (LotjaGi1g1v0469600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFPSALCYLQTLPPIPNATALNHHREPPPTVPYSTAGARRRRLHVVCAGGGGRPSTRSADDYNATLRALNSKGRFPRKSL GQHYMLNSEINEQLAGVAGIQQGDVVLEIGPGTGSLTNILLDSGAFVLAVEKDKHMAALVCERFSSTGKLKVLTEDIVKC HVRSHMSSLVGSTKQTDPETRNAKVVANIPFNISTDVVKLLLPMGDIFSEVVLLLQEETAVRLVVSSLRTSEYRPINIFV NYYSDPEYKFKVPRANFFPQPNVDAAVVSFKLKLPSEYPQVSSSKSFFSMVNSGFNEKRKMLRKSLQHICTSLEIEEALK SLGLQPTSRPEELTLDDFVKLHNLISKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 21 | 347 | 327 | 8.1E-165 | – | |
| PANTHER | 21 | 347 | 327 | 8.1E-165 | ||
| Gene3D | 68 | 274 | 207 | 4.1E-56 | – | |
| SUPERFAMILY | 74 | 347 | 274 | 4.4E-55 | ||
| ProSiteProfiles | 76 | 348 | 273 | 63.159 | ||
| TIGRFAM | 76 | 344 | 269 | 2.5E-58 | ||
| Pfam | 77 | 346 | 270 | 3.9E-42 | ||
| SMART | 90 | 274 | 185 | 4.5E-51 | ||
| ProSitePatterns | 106 | 133 | 28 | - | ||
| Gene3D | 278 | 348 | 71 | 3.2E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | RRNA modification | The covalent alteration of one or more nucleotides within an rRNA molecule to produce an rRNA molecule with a sequence that differs from that coded genetically. | ||
| Molecular function | RRNA (adenine-N6,N6-)-dimethyltransferase activity | Catalysis of the dimethylation two adjacent A residues in the loop closing the 3'-terminal stem of the 18S rRNA, using S-adenosyl-L-methionine as a methyl donor. | ||
| Biological process | RRNA processing | Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. | ||
| Molecular function | RRNA methyltransferase activity | Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a nucleoside residue in an rRNA molecule. |
Expression pattern of LotjaGi1g1v0469600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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