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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0483900 |
| Transcript ID | LotjaGi1g1v0483900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat receptor-like protein kinase family protein, putative; TAIR: AT1G65380.1 Leucine-rich repeat (LRR) family protein; Swiss-Prot: sp|O80809|CLV2_ARATH Leucine-rich repeat receptor-like protein CLAVATA2; TrEMBL-Plants: tr|F7J695|F7J695_LOTJA Leucine-rich repeat receptor-like protein; Found in the gene: LotjaGi1g1v0483900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:99734166..99736318) extracted from Lotus japonicus Gifu genome v1.2.
CCCACCATCGTTTTTACCATCTACTCACACTCCTCTGTTTGATTTTGCTGTGTGTAACACCCTCCAACTCAATTGATATC CACCCACAAGACAAAGCCTCACTTTTGAAGTTCAGGGCATGGCTGCAATACCCCAACCAGAGTTTGCCCAACTGGGTAGG TTCCAACTGCTCTACATGGAATGGAATCACCTGTGACAACAGCACTGGCAGGGTGATTTCCATTAACCTGACCAACATGA ACTTGTCAAGCCAAATCCACCCCAGTTTCTGTAACCTTTCATATCTCAACAAGGTGGTTTTGTCCCACAATAACTTCACA TGCCCTCTACCTGTTTGTTTTGGGAACTTGCTTAACCTTAAAGCCATTGATCTCAGCCACAACCAGTTTCATGGTGGAAT ACCAGACTCTTTCATGAGGCTGAAACACCTTACTGAGCTTGTTTTGAGTGGGAATCCAGATTTGGGTGGTCCACTGCCTT CTTGGATTGGTAATTTTTCTGCAAATTTGGAAAGGCTTCATCTTGGTTTCAGTTCACTCAGTGGGGTTATACCTGAGAGC TTGCTTTACTTGAAGTCTCTCAAGTATTTGGACCTTGAAGATAATCTCTTGTCTGGTAATCTGGTTGATTTTCACCAACC TTTGGTTTTTCTCAATCTTGCTTCCAATCAGTTATCAGGTACTTTGCCTTGCTTTGCAGCTTCAGTTCAGTCCCTAACTG TGTTAAACTTGTCTAACAATTCTATTGTGGGGGGATTACCTGCTTGTGTTGCTTCATTTCAAGCTTTGACTCATCTGAAC CTATCAGGGAACCACTTGAAGTATAGAATATATCCTAGGCTTGTGTTCTCAGAGAAACTTCTTGTTTTGGATTTGAGTAA CAATGATTTTTCTGGTCCTATTCCCAGTAAAATTGCAGAGACAACAGAGAAACTTGGCCTTGTTCTTCTTGACCTTTCCC ACAATCAATTCTCTGGTGAAATTCCTGTGAAAATTACTGAGTTGAAAAGTTTGCAGGCCTTGTTCCTTTCTCACAATCTT CTTTCAGGAGAAATTCCTGCTAGAATTGGAAACTTGACTTATCTTCAAGTTATTGATCTCTCACACAACTCTTTGTCTGG TACCATTCCATTCAGTATTGTTGGATGCTTTCAGCTGTATGCTTTAATACTTAATAACAACAATCTTTCTGGTGTGATTC AACCTGAGTTTGATGCATTGGATATCTTGAGGATACTGGATATAAGCAACAACGGGTTTTCTGGTGCTATTCCACTCACT TTGGCTGGATGCAAATCTCTGGAGATTGTAGATTTTAGGTCCAATGATCTTTCTGGATCCTTGAATGATGCAATAACCAA GTGGACAAACCTCAGGTATCTTTCTCTTGCTGAGAACAAGTTCAGTGGCGATTTGCCTAGTTGGTTGTTCACGTTCGAAT CAATAGAAACAATGGATTTCTCTCACAACAAGTTTTCTGGCTTCATACCTGATATTAATTTTAAGGGTAGCTTAATATTT AACACAAGGAATGTCACTGTTAAGGAGCCACTGGCTGCACCAAAAGAGTTTCAACTCAGAGTTTCAGCTGTTGTTTCTGA TAGCAATCAACTTAGTTTCACTTATGATCTCTCATCAATGGTTGGAATCGATCTATCCAGCAACTTGCTACATGGGGAGA TTCCAAGGGGCTTGTTTGGCCTAACTTCCCTAGAATACATGAATTTGTCTTACAATTTTCTAGATGGACAGCTTCCTGGT TTGCAGAAAATGCAGAGTTTGAAAGCCTTGGATTTGTCACATAATTCTCTGTCAGGACATATCCCAGGAAACATTTCTAC CCTTCAAGGTCTTGCGGTCTTGAATCTATCTTACAACTGCTTTTCTGGATATGTTCCCCAGAAGCAGGGGTATGGAAGAT TTCCTGGTGCATTTGCTGGGAATCCAGATTTATGCTTGGAATCTTCAAATGGAATATGTGATGGTGGAAGGACTCCATCC GCGCGAGGAACATCTTTTGGGGAAGATGGGATGGATGGACCAATATCTGTGGGGATTTTCTTTATCAGTGCCTTTGTTAG TTTTGATTTTGGAGTTGTTGTTCTCTTCTGTTCTGCTCGAGCAAGAAACTACATTCTCCATACTAAAGTTTGA
CDS sequence (LotjaGi1g1v0483900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACTTGTCAAGCCAAATCCACCCCAGTTTCTGTAACCTTTCATATCTCAACAAGGTGGTTTTGTCCCACAATAACTT CACATGCCCTCTACCTGTTTGTTTTGGGAACTTGCTTAACCTTAAAGCCATTGATCTCAGCCACAACCAGTTTCATGGTG GAATACCAGACTCTTTCATGAGGCTGAAACACCTTACTGAGCTTGTTTTGAGTGGGAATCCAGATTTGGGTGGTCCACTG CCTTCTTGGATTGGTAATTTTTCTGCAAATTTGGAAAGGCTTCATCTTGGTTTCAGTTCACTCAGTGGGGTTATACCTGA GAGCTTGCTTTACTTGAAGTCTCTCAAGTATTTGGACCTTGAAGATAATCTCTTGTCTGGTAATCTGGTTGATTTTCACC AACCTTTGGTTTTTCTCAATCTTGCTTCCAATCAGTTATCAGGTACTTTGCCTTGCTTTGCAGCTTCAGTTCAGTCCCTA ACTGTGTTAAACTTGTCTAACAATTCTATTGTGGGGGGATTACCTGCTTGTGTTGCTTCATTTCAAGCTTTGACTCATCT GAACCTATCAGGGAACCACTTGAAGTATAGAATATATCCTAGGCTTGTGTTCTCAGAGAAACTTCTTGTTTTGGATTTGA GTAACAATGATTTTTCTGGTCCTATTCCCAGTAAAATTGCAGAGACAACAGAGAAACTTGGCCTTGTTCTTCTTGACCTT TCCCACAATCAATTCTCTGGTGAAATTCCTGTGAAAATTACTGAGTTGAAAAGTTTGCAGGCCTTGTTCCTTTCTCACAA TCTTCTTTCAGGAGAAATTCCTGCTAGAATTGGAAACTTGACTTATCTTCAAGTTATTGATCTCTCACACAACTCTTTGT CTGGTACCATTCCATTCAGTATTGTTGGATGCTTTCAGCTGTATGCTTTAATACTTAATAACAACAATCTTTCTGGTGTG ATTCAACCTGAGTTTGATGCATTGGATATCTTGAGGATACTGGATATAAGCAACAACGGGTTTTCTGGTGCTATTCCACT CACTTTGGCTGGATGCAAATCTCTGGAGATTGTAGATTTTAGGTCCAATGATCTTTCTGGATCCTTGAATGATGCAATAA CCAAGTGGACAAACCTCAGGAATGTCACTGTTAAGGAGCCACTGGCTGCACCAAAAGAGTTTCAACTCAGAGTTTCAGCT GTTGTTTCTGATAGCAATCAACTTAGTTTCACTTATGATCTCTCATCAATGGTTGGAATCGATCTATCCAGCAACTTGCT ACATGGGGAGATTCCAAGGGGCTTGTTTGGCCTAACTTCCCTAGAATACATGAATTTGTCTTACAATTTTCTAGATGGAC AGCTTCCTGGTTTGCAGAAAATGCAGAGTTTGAAAGCCTTGGATTTGTCACATAATTCTCTGTCAGGACATATCCCAGGA AACATTTCTACCCTTCAAGGTCTTGCGGTCTTGAATCTATCTTACAACTGCTTTTCTGGATATGTTCCCCAGAAGCAGGG GTATGGAAGATTTCCTGGTGCATTTGCTGGGAATCCAGATTTATGCTTGGAATCTTCAAATGGAATATGTGATGGTGGAA GGACTCCATCCGCGCGAGGAACATCTTTTGGGGAAGATGGGATGGATGGACCAATATCTGTGGGGATTTTCTTTATCAGT GCCTTTGTTAGTTTTGATTTTGGAGTTGTTGTTCTCTTCTGTTCTGCTCGAGCAAGAAACTACATTCTCCATACTAAAGT TTGA
Protein sequence (LotjaGi1g1v0483900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNLSSQIHPSFCNLSYLNKVVLSHNNFTCPLPVCFGNLLNLKAIDLSHNQFHGGIPDSFMRLKHLTELVLSGNPDLGGPL PSWIGNFSANLERLHLGFSSLSGVIPESLLYLKSLKYLDLEDNLLSGNLVDFHQPLVFLNLASNQLSGTLPCFAASVQSL TVLNLSNNSIVGGLPACVASFQALTHLNLSGNHLKYRIYPRLVFSEKLLVLDLSNNDFSGPIPSKIAETTEKLGLVLLDL SHNQFSGEIPVKITELKSLQALFLSHNLLSGEIPARIGNLTYLQVIDLSHNSLSGTIPFSIVGCFQLYALILNNNNLSGV IQPEFDALDILRILDISNNGFSGAIPLTLAGCKSLEIVDFRSNDLSGSLNDAITKWTNLRNVTVKEPLAAPKEFQLRVSA VVSDSNQLSFTYDLSSMVGIDLSSNLLHGEIPRGLFGLTSLEYMNLSYNFLDGQLPGLQKMQSLKALDLSHNSLSGHIPG NISTLQGLAVLNLSYNCFSGYVPQKQGYGRFPGAFAGNPDLCLESSNGICDGGRTPSARGTSFGEDGMDGPISVGIFFIS AFVSFDFGVVVLFCSARARNYILHTKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 132 | 132 | 1.7E-32 | ||
| Phobius | 1 | 551 | 551 | - | – | |
| SUPERFAMILY | 2 | 130 | 129 | 2.11E-25 | – | |
| PANTHER | 2 | 352 | 351 | 1.6E-151 | – | |
| PANTHER | 2 | 352 | 351 | 1.6E-151 | – | |
| Pfam | 16 | 74 | 59 | 5.5E-10 | ||
| SMART | 112 | 134 | 23 | 330.0 | ||
| Gene3D | 133 | 531 | 399 | 2.2E-101 | ||
| SUPERFAMILY | 136 | 384 | 249 | 1.09E-47 | – | |
| Pfam | 139 | 194 | 56 | 7.4E-8 | ||
| SMART | 157 | 180 | 24 | 400.0 | ||
| SMART | 181 | 206 | 26 | 58.0 | ||
| SMART | 256 | 280 | 25 | 22.0 | ||
| PRINTS | 283 | 296 | 14 | 4.4E-6 | – | |
| Pfam | 283 | 304 | 22 | 1.9 | ||
| PANTHER | 357 | 587 | 231 | 1.6E-151 | – | |
| PANTHER | 357 | 587 | 231 | 1.6E-151 | – | |
| SUPERFAMILY | 411 | 504 | 94 | 5.67E-22 | – | |
| SMART | 414 | 438 | 25 | 49.0 | ||
| PRINTS | 461 | 474 | 14 | 4.4E-6 | – | |
| SMART | 461 | 485 | 25 | 24.0 | ||
| Pfam | 463 | 483 | 21 | 0.86 | ||
| TMHMM | 552 | 574 | 23 | - | – | |
| Phobius | 552 | 574 | 23 | - | – | |
| Phobius | 575 | 587 | 13 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0483900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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