Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0485000 |
| Transcript ID | LotjaGi1g1v0485000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT2G26790.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|O81028|PP171_ARATH Pentatricopeptide repeat-containing protein At2g26790, mitochondrial; TrEMBL-Plants: tr|A0A1J7GMU7|A0A1J7GMU7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0485000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:99832068..99836112) extracted from Lotus japonicus Gifu genome v1.2.
TCACCGTCACTGTCTTGTCTCTTCCTCCTTCCGCCGCCACTTCAAGCGGCGGCAGAACACCACCGCCCGGCGCAACACAC TTGGTCGGAGCCGGCGACGCTGCCCTCTTCCCCTTTCTGCCCGGCGAAGAACCCCCTCAGCAGAACCAGAAACGCTCTTA TTGTTACTATTACTCCACCGTGCAACACCCAGAACCACCGTCAACCACCACCACGTCCTTCTTCATCCGCCGCTGTTGAA TGTCAATTGAATGATGCGGTTTCCTCTATTCCAATTATTCCCCAAAACCCCTCATCACTCCTTAAGGTTCGCATCCACTG CACTTGCTCAACTCAATTTCTCAGACACTCCGAATTCCTCATCTTGTGACCCTGACCTTCACGCGCAAACCCTCGACCGT TTGCAAAACGACCCTTATCGTGCAATTTCCTTCTTCCATGATCTCAAGCAGCAGGGGTTCCCTCACAGCATTTCAACCTA TGCTGCCATAATCAGGATCTTCTGCTACTGGGGCATGGATAGGAGGTTAGATTCTCTCTTCCTTGAACTAATTGCCCTTT CGAAACGAGACCCATTGTTCGAAATCCATGACTTGTTTGAGGAGCTTCTGGAGGGGGAGGAGGATGAGGGTCTTGATGGG AAGCCCTTCTTGCGCAGAGCATTTGATGGGTTTGTTAAATCTTGTGTTAGTCTTAGCATGTTTGATGAGGCTATTGATTT CTTGTTTCTTAATAGGAGGCGCGGAATTCTGCCTAATATCTTGACTTGTAACTTTCTCCTCAACCGGTTGGTTGGACATG GTAAAGTGGAGATGGTCCTGGCAATTTATGAGCAGCTCAAGAGGCTTGGTTTGAGCCCTAATCATTACACCTATGCCATT GTCATGAAGGCGCTGTATAGGAAAGGTGATGTGGTTCATGTGTTTCAAGAAATGGAGGAAGCTGGGGTGACTCCTGATTC CTATTGTAATGCAGTTTTAATTGAGGGCCTCTGCAAAAATCATAGGTCTGATTGGGGATATCAGTTTCTCCAAGAATTTA GAAAGGTGAATGCTCCCATAGAGGTTTATGCTTACACCGCTGTTATTCACGGGTTTTGTAATGAAATGAAATTAGATGAA GCTGAGAGTGTTGTTTTGGACATGGAAAGGCAGGGGTTGGTTCCTGATGTGAATATTTATTCTGCATTGATCTGTGGTTA TTGTAAGAGTCATAATCTGCCCAGAGCTTTAGACTTATATGCTGACATGATTTCAAAGGGTATAAAAACAAATTGTGTAC TTGTTAGCAACATCCTTCACGGCCTTGTTGAGATGGGCATGGATTCGGATGTGGTAGATAAGTTTAAAGAATTCAAGGAA TCAGGCATGTTTCTTGATGGGGTAGCTTATAATATTGTGTTTGATGCTTTATGTAAATTAGGTAAAGTGGATGACGCAAT AGAAATGCGGGAAGAGTTGAGAGTTAAGAACATTGATTTAGATATTAAACACTACACAACCCTTATTAAAGGGTATTGCC TTCAGGGTAACCTCATTGATGCCTTTTATATGTTTAATGAAATGAAAAATAAAGGTTTTAAACCTGATATTGTCACATAT AATGTCCTGGCTGCTGGGGTGTGTAGAAATGACGAGGCTCGTGTGGCAATTAACAATTTCGATGAAATGGAGAGTGATGG TGTGGAGCCAAACTCAACTACACACAAGATGATCATTGAAGGTTTATGTTCAGTAGGCAAGGTTGGTGAAGCTGAGGCTC ATTTTAACCGTCTACAAGATAAGAGTGTTGAAATCTATTCTGCCATGGTGAATGGCTATTGTGAAGCAAGCAACAACAAC AACAACTACGGCGACGACAAAAGCCCGACCCCAATAAGTGAGGTCGGCTATTGTAAAGTAGACCTTGTCGAAAAAGCATA TGAACTTTTCCTTGAGCTGTCAAACAAAGGAGATATTGCAAAAGAAGAATCTTGTTTCAAGCTACTTACAAAACTCTGTT TGGTAGGGGACATTGGCAAAGCTATGAAGTTGCTGGAGACCATGCGGTCATTGAATGTGGAACCTAGCCAAATAATGTAT TCTATAGTATTAGATGCTTTGTGCCATGTTGGGAAGACAAAACATGCTCGCTCTTTGTTTGATTCTTTTGTGGGGAGAGG ATTTACTCCTGATGTTGTAACTTACACAACTATGATAAATAGTTATTGCAGGATGAATTCCTTGAAAGAGGCCCTTGACC TCTTCCAGGATATGAAGAGGAGAGGGATCAAACCTGATGTCATTACCTACACAGTTTTACTTTATGGGAGCTTTAAAAAT GCAGCGGCATTGGATGTTATCAACACCATCTGGAGAGATATGAAGCAAACAGAAATAAGTCTAGATGTTGTTTGTTACAG TGTTTTGATTAATGGTCTCATGAAGACAGATAACTATGAAGATGCAATTAGACTATTTGAAGACATGATTGACAAAGGAC TGGAACCAGATAAGGTCACATACACTGATATGATTTCTCTCTACTATAAAAAAGGGCTCATGAAGGAAGCTTCTGAATTG CTTGATGAAATGTCTTCAAAGGGAATGACACCAAGTTCGCATATCATCTCAGCTGTGAATCGCAGTATTCTAAAAGCTAG AAAGGTGCAATTTCATGAGTAGTTTGTCAGTTCAGACTGTCAGTGCTTGGATCTATCTCAAGTTCTAAAATCTATCTGGT CAATACTCAATACCTAAAGGTGAAACATAATCTTACGTGCTTAATCTGTAGTTATAAGTGTTTCAATTGAAATCTTGTTT CATTGGGTAAAAGCTTAATCTTTTAGGTTCGTTAGTCTTTTGACAGGCTTTCCGTAAATAGCGTTGTTTGTTCTTTCTTT TAAAAAAGGTTGCACACTGACACATTATTTCCTTAAGAATTCTCTTTTTGGGCTGAGGGATGGTGGTGATTTGGTAAGAA TCAGTCACTGCATGTCTTCATGAGGCTTTGAAACTTATTCAAAATATAAAGTTGTACAAGAGATCAATTTTTTCTTTCAA CATTACCTGTATCGTATCTTTGACTATGGAAATTCTATTCTGTGTAGACTGATGCAAAGAGACTGTGCAAACAACTTATC CAACTGAAACATAAAGTTAACACTCCTTCCAGACATAGCCACAATGTATATTTGGGATTTTTGGACCTAATGTTGATACA TTAGATCATTATGAAAAAACATGGGGAGGCATTGCTATGTGCTGGTAACATTCTTCATTGGCAGGAAAGGTAACTATCAT GTCTAGGCATTAATAACCTTCAAGACTTGGGTGATAATTAATTGTACACCCTATCTAACAACGCAAAGTATTCAACCATT TTTATTAACTACATTAATTTAAACCAATCATCAGTAAATAATTTTTTTACCCAAATTGTGTTGACTCAAATTGATTATGT TCAGTATTACATATCTGTTTAATACTGGCATGATGTGGTCGCGGCACAATATTTGTAGAACTTCATTTTCATGTAGCAGG TCTGTATTAACTTTCTTTTCTTTGAGGCATCTGCTGAACCTTATGAAGATTTGAAGATCTTCGTTGGGAACTTGCAATGG GATGTTGTGACTTGTGAGTGACCAATTGACCAATCTTTTTTAGGAGGCTGGGTCGGTGAAATTTGCTGAGGTTAGTTCTT ACCCGTTTGGATTTCATAGTTGAGGTTATGCGTGTAATGGTGTTGTATTACAACTTACAAGTTTTCAACTTTTAACATCT GAGGATGTTTAAATGTTGCTTTTGTATTGTGATTTCAGGTAATATGAATGAGATTTGAAGGGTTTAACTCTTAGTTTTAA CCATTTGAATTGGAGGCTGTGGTTAGTTTATTCAAGGTAAGTGAAGAAATTTGCATTTTTTGTGCTCTATGAACATGCTT TAAAATAGTCTTAAAAACTAATTTATTTGCTTATTACAGACATGTTGATGGTGACGGTGACCTTTCCATTCAGTTAACAG TAATTTTGGCTTTTACTGATTGAAACAACTGGAAGAACGGATGGG
CDS sequence (LotjaGi1g1v0485000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCGGTTTCCTCTATTCCAATTATTCCCCAAAACCCCTCATCACTCCTTAAGGTTCGCATCCACTGCACTTGCTCA ACTCAATTTCTCAGACACTCCGAATTCCTCATCTTGTGACCCTGACCTTCACGCGCAAACCCTCGACCGTTTGCAAAACG ACCCTTATCGTGCAATTTCCTTCTTCCATGATCTCAAGCAGCAGGGGTTCCCTCACAGCATTTCAACCTATGCTGCCATA ATCAGGATCTTCTGCTACTGGGGCATGGATAGGAGGTTAGATTCTCTCTTCCTTGAACTAATTGCCCTTTCGAAACGAGA CCCATTGTTCGAAATCCATGACTTGTTTGAGGAGCTTCTGGAGGGGGAGGAGGATGAGGGTCTTGATGGGAAGCCCTTCT TGCGCAGAGCATTTGATGGGTTTGTTAAATCTTGTGTTAGTCTTAGCATGTTTGATGAGGCTATTGATTTCTTGTTTCTT AATAGGAGGCGCGGAATTCTGCCTAATATCTTGACTTGTAACTTTCTCCTCAACCGGTTGGTTGGACATGGTAAAGTGGA GATGGTCCTGGCAATTTATGAGCAGCTCAAGAGGCTTGGTTTGAGCCCTAATCATTACACCTATGCCATTGTCATGAAGG CGCTGTATAGGAAAGGTGATGTGGTTCATGTGTTTCAAGAAATGGAGGAAGCTGGGGTGACTCCTGATTCCTATTGTAAT GCAGTTTTAATTGAGGGCCTCTGCAAAAATCATAGGTCTGATTGGGGATATCAGTTTCTCCAAGAATTTAGAAAGGTGAA TGCTCCCATAGAGGTTTATGCTTACACCGCTGTTATTCACGGGTTTTGTAATGAAATGAAATTAGATGAAGCTGAGAGTG TTGTTTTGGACATGGAAAGGCAGGGGTTGGTTCCTGATGTGAATATTTATTCTGCATTGATCTGTGGTTATTGTAAGAGT CATAATCTGCCCAGAGCTTTAGACTTATATGCTGACATGATTTCAAAGGGTATAAAAACAAATTGTGTACTTGTTAGCAA CATCCTTCACGGCCTTGTTGAGATGGGCATGGATTCGGATGTGGTAGATAAGTTTAAAGAATTCAAGGAATCAGGCATGT TTCTTGATGGGGTAGCTTATAATATTGTGTTTGATGCTTTATGTAAATTAGGTAAAGTGGATGACGCAATAGAAATGCGG GAAGAGTTGAGAGTTAAGAACATTGATTTAGATATTAAACACTACACAACCCTTATTAAAGGGTATTGCCTTCAGGGTAA CCTCATTGATGCCTTTTATATGTTTAATGAAATGAAAAATAAAGGTTTTAAACCTGATATTGTCACATATAATGTCCTGG CTGCTGGGGTGTGTAGAAATGACGAGGCTCGTGTGGCAATTAACAATTTCGATGAAATGGAGAGTGATGGTGTGGAGCCA AACTCAACTACACACAAGATGATCATTGAAGGTTTATGTTCAGTAGGCAAGGTTGGTGAAGCTGAGGCTCATTTTAACCG TCTACAAGATAAGAGTGTTGAAATCTATTCTGCCATGGTGAATGGCTATTGTGAAGCAAGCAACAACAACAACAACTACG GCGACGACAAAAGCCCGACCCCAATAAGTGAGGTCGGCTATTGTAAAGTAGACCTTGTCGAAAAAGCATATGAACTTTTC CTTGAGCTGTCAAACAAAGGAGATATTGCAAAAGAAGAATCTTGTTTCAAGCTACTTACAAAACTCTGTTTGGTAGGGGA CATTGGCAAAGCTATGAAGTTGCTGGAGACCATGCGGTCATTGAATGTGGAACCTAGCCAAATAATGTATTCTATAGTAT TAGATGCTTTGTGCCATGTTGGGAAGACAAAACATGCTCGCTCTTTGTTTGATTCTTTTGTGGGGAGAGGATTTACTCCT GATGTTGTAACTTACACAACTATGATAAATAGTTATTGCAGGATGAATTCCTTGAAAGAGGCCCTTGACCTCTTCCAGGA TATGAAGAGGAGAGGGATCAAACCTGATGTCATTACCTACACAGTTTTACTTTATGGGAGCTTTAAAAATGCAGCGGCAT TGGATGTTATCAACACCATCTGGAGAGATATGAAGCAAACAGAAATAAGTCTAGATGTTGTTTGTTACAGTGTTTTGATT AATGGTCTCATGAAGACAGATAACTATGAAGATGCAATTAGACTATTTGAAGACATGATTGACAAAGGACTGGAACCAGA TAAGGTCACATACACTGATATGATTTCTCTCTACTATAAAAAAGGGCTCATGAAGGAAGCTTCTGAATTGCTTGATGAAA TGTCTTCAAAGGGAATGACACCAAGTTCGCATATCATCTCAGCTGTGAATCGCAGTATTCTAAAAGCTAGAAAGGTGCAA TTTCATGAGTAG
Protein sequence (LotjaGi1g1v0485000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMRFPLFQLFPKTPHHSLRFASTALAQLNFSDTPNSSSCDPDLHAQTLDRLQNDPYRAISFFHDLKQQGFPHSISTYAAI IRIFCYWGMDRRLDSLFLELIALSKRDPLFEIHDLFEELLEGEEDEGLDGKPFLRRAFDGFVKSCVSLSMFDEAIDFLFL NRRRGILPNILTCNFLLNRLVGHGKVEMVLAIYEQLKRLGLSPNHYTYAIVMKALYRKGDVVHVFQEMEEAGVTPDSYCN AVLIEGLCKNHRSDWGYQFLQEFRKVNAPIEVYAYTAVIHGFCNEMKLDEAESVVLDMERQGLVPDVNIYSALICGYCKS HNLPRALDLYADMISKGIKTNCVLVSNILHGLVEMGMDSDVVDKFKEFKESGMFLDGVAYNIVFDALCKLGKVDDAIEMR EELRVKNIDLDIKHYTTLIKGYCLQGNLIDAFYMFNEMKNKGFKPDIVTYNVLAAGVCRNDEARVAINNFDEMESDGVEP NSTTHKMIIEGLCSVGKVGEAEAHFNRLQDKSVEIYSAMVNGYCEASNNNNNYGDDKSPTPISEVGYCKVDLVEKAYELF LELSNKGDIAKEESCFKLLTKLCLVGDIGKAMKLLETMRSLNVEPSQIMYSIVLDALCHVGKTKHARSLFDSFVGRGFTP DVVTYTTMINSYCRMNSLKEALDLFQDMKRRGIKPDVITYTVLLYGSFKNAAALDVINTIWRDMKQTEISLDVVCYSVLI NGLMKTDNYEDAIRLFEDMIDKGLEPDKVTYTDMISLYYKKGLMKEASELLDEMSSKGMTPSSHIISAVNRSILKARKVQ FHE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 26 | 26 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 4 | 14 | 11 | - | – | |
| Phobius | 15 | 26 | 12 | - | – | |
| Phobius | 27 | 803 | 777 | - | – | |
| PANTHER | 54 | 252 | 199 | 1.9E-133 | – | |
| ProSiteProfiles | 73 | 108 | 36 | 5.525 | ||
| ProSiteProfiles | 134 | 168 | 35 | 6.226 | ||
| Pfam | 168 | 216 | 49 | 9.4E-11 | ||
| ProSiteProfiles | 169 | 203 | 35 | 9.865 | ||
| TIGRFAM | 172 | 204 | 33 | 0.0012 | ||
| ProSiteProfiles | 204 | 234 | 31 | 5.152 | ||
| PANTHER | 221 | 375 | 155 | 1.9E-133 | – | |
| Gene3D | 222 | 323 | 102 | 8.8E-24 | ||
| ProSiteProfiles | 236 | 270 | 35 | 6.577 | ||
| ProSiteProfiles | 271 | 305 | 35 | 11.345 | ||
| TIGRFAM | 273 | 307 | 35 | 8.9E-8 | ||
| Pfam | 274 | 303 | 30 | 7.5E-5 | ||
| Pfam | 305 | 352 | 48 | 1.5E-7 | ||
| ProSiteProfiles | 306 | 340 | 35 | 11.137 | ||
| SUPERFAMILY | 308 | 772 | 465 | 5.12E-5 | ||
| TIGRFAM | 309 | 341 | 33 | 1.1E-6 | ||
| Gene3D | 324 | 432 | 109 | 2.1E-19 | ||
| ProSiteProfiles | 341 | 375 | 35 | 6.489 | ||
| PANTHER | 360 | 527 | 168 | 1.9E-133 | – | |
| Pfam | 372 | 403 | 32 | 1.1E-5 | ||
| ProSiteProfiles | 376 | 410 | 35 | 10.567 | ||
| TIGRFAM | 378 | 411 | 34 | 7.3E-6 | ||
| Pfam | 411 | 459 | 49 | 6.2E-14 | ||
| ProSiteProfiles | 411 | 445 | 35 | 12.595 | ||
| TIGRFAM | 415 | 447 | 33 | 3.7E-10 | ||
| Gene3D | 433 | 538 | 106 | 3.0E-22 | ||
| ProSiteProfiles | 446 | 480 | 35 | 10.95 | ||
| TIGRFAM | 448 | 481 | 34 | 0.0011 | ||
| Pfam | 476 | 506 | 31 | 2.3E-5 | ||
| ProSiteProfiles | 481 | 515 | 35 | 8.703 | ||
| ProSiteProfiles | 536 | 570 | 35 | 5.229 | ||
| Gene3D | 545 | 695 | 151 | 2.7E-35 | ||
| Pfam | 546 | 567 | 22 | 0.15 | ||
| PANTHER | 546 | 631 | 86 | 1.9E-133 | – | |
| ProSiteProfiles | 571 | 605 | 35 | 8.243 | ||
| ProSiteProfiles | 606 | 640 | 35 | 10.095 | ||
| Pfam | 608 | 638 | 31 | 0.0032 | ||
| TIGRFAM | 608 | 642 | 35 | 3.0E-6 | ||
| PANTHER | 636 | 797 | 162 | 1.9E-133 | – | |
| Pfam | 640 | 686 | 47 | 1.3E-19 | ||
| ProSiteProfiles | 641 | 675 | 35 | 14.984 | ||
| TIGRFAM | 643 | 677 | 35 | 7.3E-13 | ||
| ProSiteProfiles | 676 | 711 | 36 | 6.665 | ||
| Gene3D | 696 | 780 | 85 | 1.2E-19 | ||
| ProSiteProfiles | 712 | 746 | 35 | 12.803 | ||
| Pfam | 712 | 755 | 44 | 1.1E-13 | ||
| TIGRFAM | 714 | 747 | 34 | 4.4E-9 | ||
| ProSiteProfiles | 747 | 781 | 35 | 12.299 | ||
| TIGRFAM | 749 | 782 | 34 | 7.3E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0485000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…