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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0485700 |
| Transcript ID | LotjaGi1g1v0485700.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 26S proteasome non-ATPase regulatory subunit-like protein; TAIR: AT1G29150.1 non-ATPase subunit 9; Swiss-Prot: sp|Q9LP45|PSD11_ARATH 26S proteasome non-ATPase regulatory subunit 11 homolog; TrEMBL-Plants: tr|I3S4X3|I3S4X3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0485700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:99889637..99890960) extracted from Lotus japonicus Gifu genome v1.2.
GTAATGCTAAAGTTGTTAACTTTCAATTGTTTTATCTTAGGAGTTTGAAGCCATGTCTTCATCATCTTATCTTCCTGCCA CCACAGAATCAGTTGCTCTGGCATTGGAGGCCAAAGACCCATCTGATGCCATTTCCATTCTTTATCGCGTCCTCGACGAT CCGTCTTCTTCACCGGAAGCTCTGCGTATGAAGGAGCAGGCCATCACAAACCTCACTGATCTTCTCAGGCAAGAGAATCG GGGAGAGGATCTGCGCGGTCTTCTCACTCAATTGAGACCTTTTTTCTCCTTGATTCCGAAGGCCAAAACTGCAAAGATTG TTAGGGGAATAATCGACTCCGTTGCTAAAATACCGGGCTCGTCTGATCTGCAAATCGCACTCTGCAAAGAAATGGTGCAG TGGACTCGTGCTGAGAAGCGTACCTTTCTCAGGCAGCGAGTTGAGGCAAGGCTTGCGGCGCTTCTCATGGAAACGAAAGA GTATTCGGAAGCTTTGACTCTTCTTTCCGGGTTGGTTAAAGAGGTTCGCAGATTAGATGACAAGCTGCTCCTTGTGGACA TAGACTTGCTGGAAAGCAAGCTACACTTCTCATTAAGAAACCTTCCAAAGGCGAAAGCTGCTCTCACCGCTGCGAGAACA GCTGCTAATGCAATTTATGTGCCTCCAGCTCAACAAGGTGCCATAGATCTGCAGAGTGGGATACTTCATGCTGAGGAGAA GGATTACAAAACAGCATACAGTTATTTCTTTGAAGCTTTCGAGTCTTTCAATGCGCTCGAAGATCCCAAGGCTGTTTTTA GCTTGAAATACATGCTCTTGTGCAAGATCATGGTGAATCAAGCTGATGACGTGGGCGGAATTATCTCATCCAAAGCAGGC CTGCAATACGTTGGACCCGATTTGGATGCTATGAAAGCTGTTGCTGATGCTCATTCCAAGCGATCCCTCAAGTTATTTGA AACTGCTTTGCGTGACTACAAGGCGCAGTTGGAGGAAGACCCAATAGTTCACAGGCACCTGCAATCTCTGTATGGTACCC TTATGGAGCAGAATCTTTGTAGATTGATTGAGCCATTCTCAAGGGTTGAGATTGCACACATTGCTGAGCTTATTGAACTT CCCATTGAACATGTGGAGAGGAAGTTGTCTCAGATGATTCTGGACAAGAAGTTTGCTGGGACATTGGATCAAGGTGCTGG ATGCCTCATCATATTTGATGATCCCAAGACTGATGCTATATATCCTGCAACTTTGGAGACCATTTCCAATATTGGCAAGG TCGTGGACAGTCTTTATGTTAGGTCTGCCAAGATAATGGCCTGA
CDS sequence (LotjaGi1g1v0485700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCATCATCTTATCTTCCTGCCACCACAGAATCAGTTGCTCTGGCATTGGAGGCCAAAGACCCATCTGATGCCAT TTCCATTCTTTATCGCGTCCTCGACGATCCGTCTTCTTCACCGGAAGCTCTGCGTATGAAGGAGCAGGCCATCACAAACC TCACTGATCTTCTCAGGCAAGAGAATCGGGGAGAGGATCTGCGCGGTCTTCTCACTCAATTGAGACCTTTTTTCTCCTTG ATTCCGAAGGCCAAAACTGCAAAGATTGTTAGGGGAATAATCGACTCCGTTGCTAAAATACCGGGCTCGTCTGATCTGCA AATCGCACTCTGCAAAGAAATGGTGCAGTGGACTCGTGCTGAGAAGCGTACCTTTCTCAGGCAGCGAGTTGAGGCAAGGC TTGCGGCGCTTCTCATGGAAACGAAAGAGTATTCGGAAGCTTTGACTCTTCTTTCCGGGTTGGTTAAAGAGGTTCGCAGA TTAGATGACAAGCTGCTCCTTGTGGACATAGACTTGCTGGAAAGCAAGCTACACTTCTCATTAAGAAACCTTCCAAAGGC GAAAGCTGCTCTCACCGCTGCGAGAACAGCTGCTAATGCAATTTATGTGCCTCCAGCTCAACAAGGTGCCATAGATCTGC AGAGTGGGATACTTCATGCTGAGGAGAAGGATTACAAAACAGCATACAGTTATTTCTTTGAAGCTTTCGAGTCTTTCAAT GCGCTCGAAGATCCCAAGGCTGTTTTTAGCTTGAAATACATGCTCTTGTGCAAGATCATGGTGAATCAAGCTGATGACGT GGGCGGAATTATCTCATCCAAAGCAGGCCTGCAATACGTTGGACCCGATTTGGATGCTATGAAAGCTGTTGCTGATGCTC ATTCCAAGCGATCCCTCAAGTTATTTGAAACTGCTTTGCGTGACTACAAGGCGCAGTTGGAGGAAGACCCAATAGTTCAC AGGCACCTGCAATCTCTGTATGGTACCCTTATGGAGCAGAATCTTTGTAGATTGATTGAGCCATTCTCAAGGGTTGAGAT TGCACACATTGCTGAGCTTATTGAACTTCCCATTGAACATGTGGAGAGGAAGTTGTCTCAGATGATTCTGGACAAGAAGT TTGCTGGGACATTGGATCAAGGTGCTGGATGCCTCATCATATTTGATGATCCCAAGACTGATGCTATATATCCTGCAACT TTGGAGACCATTTCCAATATTGGCAAGGTCGTGGACAGTCTTTATGTTAGGTCTGCCAAGATAATGGCCTGA
Protein sequence (LotjaGi1g1v0485700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSSYLPATTESVALALEAKDPSDAISILYRVLDDPSSSPEALRMKEQAITNLTDLLRQENRGEDLRGLLTQLRPFFSL IPKAKTAKIVRGIIDSVAKIPGSSDLQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMETKEYSEALTLLSGLVKEVRR LDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFN ALEDPKAVFSLKYMLLCKIMVNQADDVGGIISSKAGLQYVGPDLDAMKAVADAHSKRSLKLFETALRDYKAQLEEDPIVH RHLQSLYGTLMEQNLCRLIEPFSRVEIAHIAELIELPIEHVERKLSQMILDKKFAGTLDQGAGCLIIFDDPKTDAIYPAT LETISNIGKVVDSLYVRSAKIMA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 423 | 421 | 4.2E-260 | – | |
| PANTHER | 3 | 423 | 421 | 4.2E-260 | – | |
| Pfam | 17 | 129 | 113 | 2.4E-34 | ||
| Gene3D | 47 | 422 | 376 | 1.9E-158 | – | |
| SUPERFAMILY | 130 | 324 | 195 | 4.48E-6 | ||
| ProSiteProfiles | 224 | 392 | 169 | 19.192 | ||
| Pfam | 286 | 387 | 102 | 6.4E-20 | ||
| SUPERFAMILY | 315 | 397 | 83 | 8.7E-19 | ||
| SMART | 321 | 404 | 84 | 1.8E-18 | – | |
| SMART | 321 | 404 | 84 | 1.8E-18 | ||
| Pfam | 393 | 419 | 27 | 3.1E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0485700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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