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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0497300 |
| Transcript ID | LotjaGi1g1v0497300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent zinc metalloprotease FtsH; TAIR: AT5G40010.1 AAA-ATPase 1; Swiss-Prot: sp|Q9FLD5|ASD_ARATH AAA-ATPase ASD, mitochondrial; TrEMBL-Plants: tr|A0A0L9U3C7|A0A0L9U3C7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0497300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:101274328..101276532) extracted from Lotus japonicus Gifu genome v1.2.
CTCAATTGTTCTAATTAAAAAAAAAAATGAATTTCATCACATGAATGGTGAGTCAGTGCGTTATCCACCCGTTTTTCAAA TATTTGGTTCTGATGAATTAAACATGCATTGCCTCAACCTTAGATAATTTTGTGGTCTAAATAATTAAAAAGCTCAAAAA ATAATTTGTATGAATTTTGATATTTTTACTTTTAATATATCATTTTATAGTCACTGCTCAAGAGTTGTGGTCGTTATATA GCTTGTACCTTGCATCCATAGCCAAACTAACACACAACATCAAGTGTAGTGTAGTAGTGAGTGGAGTGGAGTGTAGGCAT GGGGGAACTATGGTCACAACTAGGCTCCTTAATAGCCACCACCATGTTTGTGTACGCCATGGTTGAGCGTTTTTTCCCTG CTGCACTACGTGACAGTCTTCAATTACAGACACAAAAAATGGTGAACCTTTTCTACCCTTATATCCAAATCACCTTCCCT GAATTCTCAGGTGAGAGGCTCAAGAGGAGTGAAGCTTACACTGCAATCCAAACATACCTCAGTGAAAACTCTTCCCAACT AGCCAAAAGGCTCAAAGCTGAAGTGGTGAAAGATAGCCAGAACCCATTGGTTCTCAGCGTAGATGATGATGAAGAGGTGA CAGATGAGTTCCAAGGTGTTAAGCTATGGTGGGCTGCAAGCAAAATCGCCACAAACCCGCAAGCTTATTCCTTCTCTTAT TACACTCCCCTTGATGGGAAAAGATTCTACAAGCTCACTTTCCACAAGCAACACAGAGATCTCATCACTGTGTCTTACAT CAAACATGTCCTGCAACAAGGGAAGGAAATTGCCTTGAGAAATAGGCAGAGGAAGCTTTACACCAACAATCCAAGCAGGT ACGAGCCATTTCACTTATAAACTGTTCAACATTTAATTTTATTTTTCAATCCAATGTGAGACTTCTTTACTCACACTTGA TCTCGCGGCAGTGGTTGGTATGGTTACAAGCAATCAAAGTGGAGCCACATAGTTTTTGAGCACCCTGCAACTTTTGAGAC ACTTGCACTGGAGAAGAACAAGAAGGAGGAGATCATCAATGACCTTGTTAGGTTCAGAAATGGAAAAGACTACTATGCGA AAATTGGCAAGGCTTGGAAGCGTGGCTATTTACTCTTCGGTCCTCCGGGGACCGGTAAGTCTACCATGATTGCCGCCATG GCTAATTTCATGAACTATGATGTGTATGATCTTGAATTGACTGCAGTTAAGGACAACACTGAGCTGAGGAAGCTCTTGAT TGAAACTTCTAGCAAGGCTATTATAGTTGTGGAAGACATTGATTGCTCTCTTGATCTCACTGGTCAGAGGAAGATGATGA AGAAGGAGAAAAATGAGGAAGAAGAACCAAAAGAGTTATATCCTGGTAGAAAAAATGAAGAAGAGAATAGCAAAAGTAGT AAAGTAACTCTGTCTGGTTTATTGAATTTTATTGATGGTATTTGGTCAGCATGTGGAGGAGAAAGGATCATCATTTTCAC AACAAACTTTATAGAGAAACTTGATCCTGCTCTTATTAGGACAGGAAGGATGGATAAACACATTGAATTGTCCTATTGTT GCTATGAAGCATTCAAGGTACTTGCTAAGAACTACTTGGATGTTGACTCACACTATTTGTTTGCTAGAATTGCAAATTTG TTGGAAGTTACCAATATGACACCTGCTGATGTTGCTGAGAATCTGATATCTAAATCATTGAATGAAAATGTGGAGACTTG CTTGCTGACTTTGATTCAAGTTCTTGAGATGAAAATGGTAGAAGGAGAAACAGGGTTAAAGGAAGAAAAAAACAAGCAAG ATCCTACTCAAAAGGGGATGAAAAATAATGCACAAACTGTGGAAGATGTGAAGGAAAATGGCTTCATTCATTGAGTGGAA AAGATATTGATTGAGATTGTTACACTTGCTTGATGAAACATCAATTCAGCTGCATTATTAAAAGCTACAATCTCATATAG TTCAATTTGTGGTTGAAACATCTACTTAGCTATATTATTTTCTTGTTTTGTAAGTGACAAGTGATAATATCAATCACTTT CATTCACGCGTGCCTGTCATTCTATTTCAGAATTAGACATTTTGAAACAGCATCATACCTGGTTCAGGGTCTACCTACAT GTGCTTACAAGAAAGAATTATATTCGTTGTAGTTTATACAGTTAG
CDS sequence (LotjaGi1g1v0497300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGAACTATGGTCACAACTAGGCTCCTTAATAGCCACCACCATGTTTGTGTACGCCATGGTTGAGCGTTTTTTCCC TGCTGCACTACGTGACAGTCTTCAATTACAGACACAAAAAATGGTGAACCTTTTCTACCCTTATATCCAAATCACCTTCC CTGAATTCTCAGGTGAGAGGCTCAAGAGGAGTGAAGCTTACACTGCAATCCAAACATACCTCAGTGAAAACTCTTCCCAA CTAGCCAAAAGGCTCAAAGCTGAAGTGGTGAAAGATAGCCAGAACCCATTGGTTCTCAGCGTAGATGATGATGAAGAGGT GACAGATGAGTTCCAAGGTGTTAAGCTATGGTGGGCTGCAAGCAAAATCGCCACAAACCCGCAAGCTTATTCCTTCTCTT ATTACACTCCCCTTGATGGGAAAAGATTCTACAAGCTCACTTTCCACAAGCAACACAGAGATCTCATCACTGTGTCTTAC ATCAAACATGTCCTGCAACAAGGGAAGGAAATTGCCTTGAGAAATAGGCAGAGGAAGCTTTACACCAACAATCCAAGCAG TGGTTGGTATGGTTACAAGCAATCAAAGTGGAGCCACATAGTTTTTGAGCACCCTGCAACTTTTGAGACACTTGCACTGG AGAAGAACAAGAAGGAGGAGATCATCAATGACCTTGTTAGGTTCAGAAATGGAAAAGACTACTATGCGAAAATTGGCAAG GCTTGGAAGCGTGGCTATTTACTCTTCGGTCCTCCGGGGACCGGTAAGTCTACCATGATTGCCGCCATGGCTAATTTCAT GAACTATGATGTGTATGATCTTGAATTGACTGCAGTTAAGGACAACACTGAGCTGAGGAAGCTCTTGATTGAAACTTCTA GCAAGGCTATTATAGTTGTGGAAGACATTGATTGCTCTCTTGATCTCACTGGTCAGAGGAAGATGATGAAGAAGGAGAAA AATGAGGAAGAAGAACCAAAAGAGTTATATCCTGGTAGAAAAAATGAAGAAGAGAATAGCAAAAGTAGTAAAGTAACTCT GTCTGGTTTATTGAATTTTATTGATGGTATTTGGTCAGCATGTGGAGGAGAAAGGATCATCATTTTCACAACAAACTTTA TAGAGAAACTTGATCCTGCTCTTATTAGGACAGGAAGGATGGATAAACACATTGAATTGTCCTATTGTTGCTATGAAGCA TTCAAGGTACTTGCTAAGAACTACTTGGATGTTGACTCACACTATTTGTTTGCTAGAATTGCAAATTTGTTGGAAGTTAC CAATATGACACCTGCTGATGTTGCTGAGAATCTGATATCTAAATCATTGAATGAAAATGTGGAGACTTGCTTGCTGACTT TGATTCAAGTTCTTGAGATGAAAATGGTAGAAGGAGAAACAGGGTTAAAGGAAGAAAAAAACAAGCAAGATCCTACTCAA AAGGGGATGAAAAATAATGCACAAACTGTGGAAGATGTGAAGGAAAATGGCTTCATTCATTGA
Protein sequence (LotjaGi1g1v0497300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGELWSQLGSLIATTMFVYAMVERFFPAALRDSLQLQTQKMVNLFYPYIQITFPEFSGERLKRSEAYTAIQTYLSENSSQ LAKRLKAEVVKDSQNPLVLSVDDDEEVTDEFQGVKLWWAASKIATNPQAYSFSYYTPLDGKRFYKLTFHKQHRDLITVSY IKHVLQQGKEIALRNRQRKLYTNNPSSGWYGYKQSKWSHIVFEHPATFETLALEKNKKEEIINDLVRFRNGKDYYAKIGK AWKRGYLLFGPPGTGKSTMIAAMANFMNYDVYDLELTAVKDNTELRKLLIETSSKAIIVVEDIDCSLDLTGQRKMMKKEK NEEEEPKELYPGRKNEEENSKSSKVTLSGLLNFIDGIWSACGGERIIIFTTNFIEKLDPALIRTGRMDKHIELSYCCYEA FKVLAKNYLDVDSHYLFARIANLLEVTNMTPADVAENLISKSLNENVETCLLTLIQVLEMKMVEGETGLKEEKNKQDPTQ KGMKNNAQTVEDVKENGFIH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 492 | 491 | 1.8E-299 | – | |
| PANTHER | 2 | 492 | 491 | 1.8E-299 | – | |
| Pfam | 26 | 120 | 95 | 1.7E-22 | ||
| SUPERFAMILY | 100 | 441 | 342 | 3.8E-50 | ||
| Gene3D | 198 | 395 | 198 | 6.1E-42 | – | |
| SMART | 242 | 397 | 156 | 6.0E-7 | ||
| CDD | 243 | 395 | 153 | 4.48625E-7 | – | |
| Pfam | 247 | 394 | 148 | 4.3E-14 | ||
| MobiDBLite | 315 | 341 | 27 | - | – | |
| ProSitePatterns | 365 | 383 | 19 | - | ||
| MobiDBLite | 468 | 488 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi1g1v0497300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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