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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0503600 |
| Transcript ID | LotjaGi1g1v0503600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent zinc metalloprotease FTSH protein; TAIR: AT5G15250.1 FTSH protease 6; Swiss-Prot: sp|Q1PDW5|FTSH6_ARATH ATP-dependent zinc metalloprotease FTSH 6, chloroplastic; TrEMBL-Plants: tr|I1N4D7|I1N4D7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0503600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:102128782..102132874) extracted from Lotus japonicus Gifu genome v1.2.
CAAAACTTGAGCATATGATGCATCAACAGAAGTTTTGGTATTAATCCAAATTCCGAAAATTCCACACTGCCACTTCAATA CTTCCAAGTGTATGGTTGTGACTTGTGATCATATAGATGATATTTTCTACAGTCCCTCGCTCTGTGCTCTTTTTGCCTGA GGCAATCACATCATTTGATATTACCATTTCTAAAGGAATCTGAGAGAGGAACATAGCAGAACCTTCATGAATGAAGAACA GGACAAACATAACAAATATCCCTACTTCAAGAAAATTCCAAATTAAAGCACCAGAAGCTTCCCATTTCTCACTATTTTAA AGCAAAATCTGCTCCTTCCCTCCAACTCAATTTTTGCGCACTACACAAGTCATTGAAGAAAGAGTGCAACACCACAAGCC TCTTGTATTATCTCATCACTACAAATTCAAACTAGGTAACTACTTTGCATTTATAAAATGTCTTCTGCTCTATCTCTCTC TGCCTCCCCCACTTTGATCCACAAGCCTCAAAATATTTCCAAGCACACCCCATGTCCACAAACTCCTTTAGATTTCAAAG TTAGCAAGAGGAAGCTATTATCATCAACTGTGATTGGATTGGGACCAAATTGGGTTGGGCTATCTGCTGCTCAGCCTACA AGAGCTGAGCCAGAGAGCCCTGTTGCTTCCACCTCAAGTAGAATGTCATACTCAAGGTTCCTGCAGTACTTGGATGAAGG TGTTGTCAAGAAGGTGGATCTCTTTGAGAATGGCACAGTTGCTATTGCAGAGATATTCAATCCAACATTGGGAAAAATCC AAAGAGTCAAAATTCAGTTACCCGGGCTACCTCAGGAGCTGCTCAAGAAAATGAAAGATAAAAATGTTGACTTTTCTGCT CACCCCATGGATGTAAATTGGGGGGATGCAATGCTTGATTTGTTGGGAAATTTGGCCTTTCCTTTGATACTCCTTGGCAG TCTACTCCTCAGGACATCTTCAAGAAATTCTCCTGGTGGTCCTAACTTGCCCTTTGGACTAGGAAGGTATGAATTTTAGT ATATGTTGAGAATACACATTGACTAGAGATAAGACCAACATAAAAATTATAAAGACATGGGGAATCCTATTCATTAGAGC TAACTTTTGGTTTTGAGTTAGGCTAAGGTCCGGTCTGGAAGAGCTTATTAGCTTAAGAATATAAGTTTATTGTTATAAGT GCTTAATTAAGTTTCCAAGTCTAAGTTTTGAGAGCTTATGACTTTTCCATATTTATAAGTTAGTTATAGGTTGTACCCTT TGACATTATTTGGTTTTTTCATCTTTACTTCAGGAGTAAGGCGAAATTTCAGATGGAACCAAATACAGGAGTGACATTTG ATGATGTGGCTGGAGTTGATGAAGCCAAGCAAGATTTCCAAGAGATTGTTGAGTTCTTGAAGACTCCAGAGAAGTTTTCA GCAGTTGGAGCCAAAATTCCCAAAGGAGTTCTCTTGGTTGGGCCACCAGGGACTGGAAAGACATTGCTGGCCAAGGCAAT TGCAGGAGAAGCAGGGGTTCCATTCTTTTCTCTGTCTGGGTCAGAGTTCATTGAGATGTTTGTTGGTGTAGGGGCTTCAA GGGTGAGGGATTTGTTCAACAAGGCCAAAGAAAATTCACCTTGTTTGATATTCATTGATGAGATAGATGCTGTGGGGAGG CAGAGAGGTACAGGTATAGGTGGAGGGAATGATGAAAGAGAGCAAACACTGAATCAATTGCTCACTGAAATGGATGGTTT CACTGGAAACACTGGAGTTATAGTTATTGCTGCCACTAACAGACCTGAAATTCTTGATGCAGCATTGCTCAGACCTGGGA GGTTTGATAGGCAGGTAAAGTTTACTTATTGCTACTAGTTTTCAAATTTTCTTTATAATTGAAGTTGAAGCCAGAGTGGG TGAGCCTCAACACAACAATAAAGTTGATTGCATGTGACTTTGTACTCACAAGTTCAAAGTCTCAATATCTTGCAAAAATG CAAGGTAAAACAAATTACATTAAATCCACTAAGTGGATCCAGCCCTTCCTTATACTTCGCACATTGCGGAAGTTTTATAG CACCAGGTTTTCCCTTTAATTGAAGTCGAAGCTAGAGAGCGCGAGCTTTGGCTCAACGGTAAGGTTGCTACCATGTGATT TTTACTGTCACAGGTTCGAGCCTTGGCCTCCTCAGCCTCTTGTAAAAATGAAAGTTAAGACTGCTTACATTTGATCCATA AAGTGAGTCCGGCCCCTTCCTGGATCTCATGCATAGCGGGAACTTTATAGCACCAAATTTTTCCTTGATTTGAAGTTGAA GCCAAACCAAAATATAGCTGATCAAGTTTGTGGTTGTTCCAATAGGTTTCTGTTGGACTACCAGATATTAGAGGGAGGGA AGACATACTGAAAGTTCATAGTAACAACAAGAAACTTGACAAGGATGTATCTCTTAGTGTTATTGCCATGAGAACTCCGG GTTTCAGTGGTGCAGACCTGGCAAACCTCATGAATGAAGCCGCCATTCTAGCCGGTCGTAGGGGCAAAGAGAAGATCACA ATGAGAGAAATTGATGACTCCATAGATCGCATTGTGGCAGGGATGGAAGGAACCAAGATGACTGATGGCAAGAGCAAAAT TCTTGTGGCTTACCATGAAGTTGGACATGCTGTTTGTGCGTAAGTATATCAAATCATCAAATACTTGTTCATAGTGTCGA TAGGAAAAATATGAAAAATATTGTAAGTGTGAATCTAGAGTCTCATATTGATTAATGAATGTGATAAAGAAACTCTAACA GACTCACATACCCAAAGCTTTAAGGTTTTGCGTAAAAATGTGGTATCAGGTTCTCTTGGTAGTCTTTGGTGTCGGTCCAT CCGTGTAGGTTCTCTTGCTTTCAGCTCCAGCTGTCTTCCCAGTACTTTGTATTGTTGAAATTTAAATTGATGTCTTCTCT CTGCAGGACACTGACCCCAGGGCATGATCCAGTACAGAAAGTTACTCTAGTTCCCAGAGGCCAAGCTAGGGGCTTAACAT GGTTCATACCAGGTGAAGATCCTACTCTTATCTCTAAGATGCAACTGTTTGCTAGGATAGTTGGAGGCTTAGGGGGTAGA GCAGCAGAGGAAGTCATATTTGGTGAAACTGAGATAACCACCGGAGCTGCTGGGGACTTGCAACAAATTACACAAATAGC AAGACAGGTAAATTCATGTCTTCTACAATTGATTCTTAAAGTTAAAACAAATTTCGGAGTAATCTTTTGTGAGTAGCTTT TTGGCTGTGAAAAAATAAGTTGATTCAAACATGTTATTAGTTTCAGGCTTGTCTAAATCACTTTAAATAAATGAGGTAAA ATCACCATAGGGTTAGGTGGTACATGTCAAAATATTACTGGGCCGTCTAAACTAGAGTAATCTTATCCTTATTTACTTGG GGTCATTTAGACAACCCTGTTTCGGGCTTGAGAGAGGAAATTGCATTCTTCTGAATAATGGTTCTATTTTGCAACAGATG GTGACAATGTATGGCATGTCTGAGATTGGACCATGGGCATTAACTGATCCTGCAGTGCAAAGCGGTGATGTAGTGCTGAG GATGCTGGCAAGGAACTCAATGTCAGAGAAACTAGCTGAGGACATTGATCAAGCTGTGAAGCAGATAATAGAGAAAGCAT ATGCAATCGCAAAGAATCACATAAGGAATAACCGGGATGCAATTGATAAACTTGTGGATGTGCTGCTTGAGAAGGAGACT CTAACTGGAGATGAATTCAGAGCAATCTTATCAGAGTTCACTGATATTTCTTCAATTAAGATAGATAGAACCTCTATCAG AGAAATGATCGAAGCATAAGTATAGTTTCAGTGACAAGGCAGACTGTTATAGCTTTGTAGGACAGTAGGATGACTTTGTA CATGAGTATATAAGGATTCTAATCCAGCAGCATTCACACATTCAAAGATTTTGAGTCATCCGATCACTCACTCATTCAAG GATTTTGAATCATCCAATTAAGGTTGGATGACTCCGATTCTGAGTTACTATTTCAATTTACTTATTATATATAACTTAGA ACGTGAGTTGTCC
CDS sequence (LotjaGi1g1v0503600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCTGCTCTATCTCTCTCTGCCTCCCCCACTTTGATCCACAAGCCTCAAAATATTTCCAAGCACACCCCATGTCC ACAAACTCCTTTAGATTTCAAAGTTAGCAAGAGGAAGCTATTATCATCAACTGTGATTGGATTGGGACCAAATTGGGTTG GGCTATCTGCTGCTCAGCCTACAAGAGCTGAGCCAGAGAGCCCTGTTGCTTCCACCTCAAGTAGAATGTCATACTCAAGG TTCCTGCAGTACTTGGATGAAGGTGTTGTCAAGAAGGTGGATCTCTTTGAGAATGGCACAGTTGCTATTGCAGAGATATT CAATCCAACATTGGGAAAAATCCAAAGAGTCAAAATTCAGTTACCCGGGCTACCTCAGGAGCTGCTCAAGAAAATGAAAG ATAAAAATGTTGACTTTTCTGCTCACCCCATGGATGTAAATTGGGGGGATGCAATGCTTGATTTGTTGGGAAATTTGGCC TTTCCTTTGATACTCCTTGGCAGTCTACTCCTCAGGACATCTTCAAGAAATTCTCCTGGTGGTCCTAACTTGCCCTTTGG ACTAGGAAGGAGTAAGGCGAAATTTCAGATGGAACCAAATACAGGAGTGACATTTGATGATGTGGCTGGAGTTGATGAAG CCAAGCAAGATTTCCAAGAGATTGTTGAGTTCTTGAAGACTCCAGAGAAGTTTTCAGCAGTTGGAGCCAAAATTCCCAAA GGAGTTCTCTTGGTTGGGCCACCAGGGACTGGAAAGACATTGCTGGCCAAGGCAATTGCAGGAGAAGCAGGGGTTCCATT CTTTTCTCTGTCTGGGTCAGAGTTCATTGAGATGTTTGTTGGTGTAGGGGCTTCAAGGGTGAGGGATTTGTTCAACAAGG CCAAAGAAAATTCACCTTGTTTGATATTCATTGATGAGATAGATGCTGTGGGGAGGCAGAGAGGTACAGGTATAGGTGGA GGGAATGATGAAAGAGAGCAAACACTGAATCAATTGCTCACTGAAATGGATGGTTTCACTGGAAACACTGGAGTTATAGT TATTGCTGCCACTAACAGACCTGAAATTCTTGATGCAGCATTGCTCAGACCTGGGAGGTTTGATAGGCAGGTTTCTGTTG GACTACCAGATATTAGAGGGAGGGAAGACATACTGAAAGTTCATAGTAACAACAAGAAACTTGACAAGGATGTATCTCTT AGTGTTATTGCCATGAGAACTCCGGGTTTCAGTGGTGCAGACCTGGCAAACCTCATGAATGAAGCCGCCATTCTAGCCGG TCGTAGGGGCAAAGAGAAGATCACAATGAGAGAAATTGATGACTCCATAGATCGCATTGTGGCAGGGATGGAAGGAACCA AGATGACTGATGGCAAGAGCAAAATTCTTGTGGCTTACCATGAAGTTGGACATGCTGTTTGTGCGACACTGACCCCAGGG CATGATCCAGTACAGAAAGTTACTCTAGTTCCCAGAGGCCAAGCTAGGGGCTTAACATGGTTCATACCAGGTGAAGATCC TACTCTTATCTCTAAGATGCAACTGTTTGCTAGGATAGTTGGAGGCTTAGGGGGTAGAGCAGCAGAGGAAGTCATATTTG GTGAAACTGAGATAACCACCGGAGCTGCTGGGGACTTGCAACAAATTACACAAATAGCAAGACAGATGGTGACAATGTAT GGCATGTCTGAGATTGGACCATGGGCATTAACTGATCCTGCAGTGCAAAGCGGTGATGTAGTGCTGAGGATGCTGGCAAG GAACTCAATGTCAGAGAAACTAGCTGAGGACATTGATCAAGCTGTGAAGCAGATAATAGAGAAAGCATATGCAATCGCAA AGAATCACATAAGGAATAACCGGGATGCAATTGATAAACTTGTGGATGTGCTGCTTGAGAAGGAGACTCTAACTGGAGAT GAATTCAGAGCAATCTTATCAGAGTTCACTGATATTTCTTCAATTAAGATAGATAGAACCTCTATCAGAGAAATGATCGA AGCATAA
Protein sequence (LotjaGi1g1v0503600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSALSLSASPTLIHKPQNISKHTPCPQTPLDFKVSKRKLLSSTVIGLGPNWVGLSAAQPTRAEPESPVASTSSRMSYSR FLQYLDEGVVKKVDLFENGTVAIAEIFNPTLGKIQRVKIQLPGLPQELLKKMKDKNVDFSAHPMDVNWGDAMLDLLGNLA FPLILLGSLLLRTSSRNSPGGPNLPFGLGRSKAKFQMEPNTGVTFDDVAGVDEAKQDFQEIVEFLKTPEKFSAVGAKIPK GVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKENSPCLIFIDEIDAVGRQRGTGIGG GNDEREQTLNQLLTEMDGFTGNTGVIVIAATNRPEILDAALLRPGRFDRQVSVGLPDIRGREDILKVHSNNKKLDKDVSL SVIAMRTPGFSGADLANLMNEAAILAGRRGKEKITMREIDDSIDRIVAGMEGTKMTDGKSKILVAYHEVGHAVCATLTPG HDPVQKVTLVPRGQARGLTWFIPGEDPTLISKMQLFARIVGGLGGRAAEEVIFGETEITTGAAGDLQQITQIARQMVTMY GMSEIGPWALTDPAVQSGDVVLRMLARNSMSEKLAEDIDQAVKQIIEKAYAIAKNHIRNNRDAIDKLVDVLLEKETLTGD EFRAILSEFTDISSIKIDRTSIREMIEA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 668 | 667 | 0.0 | – | |
| PANTHER | 2 | 668 | 667 | 0.0 | – | |
| Hamap | 3 | 659 | 657 | 35.345 | ||
| TIGRFAM | 156 | 646 | 491 | 4.1E-212 | ||
| Gene3D | 193 | 374 | 182 | 2.3E-69 | – | |
| SUPERFAMILY | 200 | 445 | 246 | 2.72E-71 | ||
| CDD | 217 | 375 | 159 | 1.22597E-28 | – | |
| SMART | 238 | 377 | 140 | 6.0E-25 | ||
| Pfam | 242 | 374 | 133 | 5.4E-45 | ||
| ProSitePatterns | 345 | 363 | 19 | - | ||
| Gene3D | 376 | 452 | 77 | 1.1E-28 | – | |
| Pfam | 397 | 440 | 44 | 2.8E-13 | ||
| Pfam | 455 | 645 | 191 | 2.9E-67 | ||
| SUPERFAMILY | 457 | 649 | 193 | 2.49E-66 | ||
| Gene3D | 457 | 660 | 204 | 6.5E-67 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metalloendopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi1g1v0503600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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