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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0508900 |
| Transcript ID | LotjaGi1g1v0508900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin-protein ligase, putative; TAIR: AT3G29270.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8CEF8|RN222_MOUSE RING finger protein 222; TrEMBL-Plants: tr|I3SH84|I3SH84_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0508900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:102804294..102806703) extracted from Lotus japonicus Gifu genome v1.2.
ATAGTCTACACGGCGTCGTTTTGTCTGCCACTTGGATCCGATCATCAAAACAAAACTCCATAGCTATCTTCTGTCTCCAC CCTGAAAACGTTGTTACAAACAAACATTCATTTGACTCCTCTGTCCTTTTTTCCTCTTTAAATCTCTCCCTAACGTCAAT TTTTCCTCTCAGAGCTTCCACCTTAAGGTACGATTTCCATTATCTCTTTCGATCCATCTTCACATTTTGTTTGCAATGAT TTCAATTCCATTTTAATTGCATGCCTCATTCGGATTTCACATTTGTAAATCTTGTCAATGATATCTTGAGCTAAATTGGA TGTTATGTTATGATCATGTTGGCTCAATGAGCTAATTTTGTGAAAATTGTTGGAATTCGGAGCATGCTGTGAAAAGGGTT TGTTTGGGTTTGGGAGCTGGGAAGGGATATCAAAGATTATGAAATGATAATCTGAAATGGTGTGTGTTTCACAATGTCAA TGTTTGTAAATGGAACTAATTTGACGGATGAATTATATATCTTAAAGACTGGACTAGTTTGATGGACAAATGGCATTCAA GGACCTTGATCATATATTTCACTGTTCAAGAATGAATATGAAAATATTTGTATTTGTTAGGAATAATTTGACTATTTACT CATTCTTGATACTACCCATTTTCTGAGGTAGGCCTAAATTGTTTTTCAGGTTAAAAAGTCTACTAGGTTTTATGGCCATG TATTGGTGTAAAAAGTGAAAGAAACTACTTTCATAACTGCTTAGTATAATGGATTATAGTACTATTATACTAACTAATTT ATTTGTAATTGATTATGCTTTTTGGATTGTTTTAATGCATGTACCATGTGGTGTTGTTATGGTTGAAATCTTTGCATTGA AAAAATGGTAGTCATGGATTATGACATCCAACTGTTTATTTCCCAGTTGTTTATTCTTATAGAAAGTGTATGAAATGCAT GTGTAAAATTGACATGAGTTCACATTTATGATCTTTGGTATCTGCATATGATGATGTACTTCAAACAGTTATTTCATTTC TGTTAATACAACATTTCTTAGTATTGTATGACGGTGTTACAGGAAGCTTTCTGACACTTATTTTCGTTCAGGTTTAAACT TGGTATACTTTGTTGCAATTCACATGTTCCAAACTCCAAATGGTGCCTGTTACTTGAGAATTTTACCTATTGTGACGTGA TTCAGAATGTGGAACTTTGCATCAAGTTGCATTTCTGGAAGTGTAGGTCTGAAAAATGATTGTCTAAAGCCAACTCACTC CGCTTCAGAATGCTCTGACGATGAGACTTCTATGACGACCAGGGAGGAAGGGCTAGAATGCCCAATATGCTGGGAATCTT TTAACATTGTTGAAAACGTTCCTTACGTTTTATGGTGTGGCCACACCCTCTGTAAAAATTGCATCCTGGGACTGCAATGG GCTATGGTGAAATTCCCAACTCTTCCAATTCAGCTTCCACTTTTTATCTCCTGCCCCTGGTGCAACATTTTATCTTTCCG TTTAGTTCATCAGGGAAATTTGAAATTCCCTCGCAAGAACTATTTTCTTCTTTGGATGGTTGAGAGCATGAATGGTGACA GAGCAACGCCACATTCAACTCGCTGTGGGGATGATCAACCAGTCTGGCCTGGTAAAGAGAATTCAACTATGGGAAGCCAA CTAAGCCTTGGCAACCCTCGGAGAAGACAAGTTCATCATCCAGAGTTGTCAAATTCCAACCAATTTAACGGCAATACCGG TAATCACCTCAGAATGGAAAGACTGCATACTTCTCTGCGGAAGTCACTGGTTTTGTTTGTTCACTTGACAGCAAAGTTCC CATTGATCATTATATTTCTTTTGATTGTGTTATATGCAATACCTGCCAGTGCAGCCATTTTGGCACTGTATATAGTTTTT ACTATTCTCTTTGCTCTCCCATCATTTCTCATCTTGTACTTTGCATATCCTAGTTTGGATTGGCTTGTCCGAGAAATTAT CAATTGAGATCCTGGGGTTGTACATTCTTCTGCTTTGCAAGGATTAAAACCAGACCTGATGTTTTGAAGTGGATCACTAT TAAAAAAGCTGTTATATTGTTTCATGGTCACATCTATATTTTCCTTATGATACTGCTTTATAGTTTTATTTTTGCTAATT GTAATTATGTATTACTTCAGTGGCTTATCTGGTTACATAAGTATTGGATGGCTGCTGCCTGGAAATGGAAGGTCTTCCAT ACTTGTTGGAAATGTATCTTGCATTTATGGTTGCACAAAGTTGAAAGCAGTATGGAAGTTTAACATTTTCAAAGGAATTT AGGCTGCATTTGAAAAAGTTTACTTGAGTTCATCCTATAGCATATGCACTCATGTAAGTGTTTGAGTATGTTTATGATGT AATCTCTTTT
CDS sequence (LotjaGi1g1v0508900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGAACTTTGCATCAAGTTGCATTTCTGGAAGTGTAGGTCTGAAAAATGATTGTCTAAAGCCAACTCACTCCGCTTC AGAATGCTCTGACGATGAGACTTCTATGACGACCAGGGAGGAAGGGCTAGAATGCCCAATATGCTGGGAATCTTTTAACA TTGTTGAAAACGTTCCTTACGTTTTATGGTGTGGCCACACCCTCTGTAAAAATTGCATCCTGGGACTGCAATGGGCTATG GTGAAATTCCCAACTCTTCCAATTCAGCTTCCACTTTTTATCTCCTGCCCCTGGTGCAACATTTTATCTTTCCGTTTAGT TCATCAGGGAAATTTGAAATTCCCTCGCAAGAACTATTTTCTTCTTTGGATGGTTGAGAGCATGAATGGTGACAGAGCAA CGCCACATTCAACTCGCTGTGGGGATGATCAACCAGTCTGGCCTGGTAAAGAGAATTCAACTATGGGAAGCCAACTAAGC CTTGGCAACCCTCGGAGAAGACAAGTTCATCATCCAGAGTTGTCAAATTCCAACCAATTTAACGGCAATACCGGTAATCA CCTCAGAATGGAAAGACTGCATACTTCTCTGCGGAAGTCACTGGTTTTGTTTGTTCACTTGACAGCAAAGTTCCCATTGA TCATTATATTTCTTTTGATTGTGTTATATGCAATACCTGCCAGTGCAGCCATTTTGGCACTGTATATAGTTTTTACTATT CTCTTTGCTCTCCCATCATTTCTCATCTTGTACTTTGCATATCCTAGTTTGGATTGGCTTGTCCGAGAAATTATCAATTG A
Protein sequence (LotjaGi1g1v0508900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWNFASSCISGSVGLKNDCLKPTHSASECSDDETSMTTREEGLECPICWESFNIVENVPYVLWCGHTLCKNCILGLQWAM VKFPTLPIQLPLFISCPWCNILSFRLVHQGNLKFPRKNYFLLWMVESMNGDRATPHSTRCGDDQPVWPGKENSTMGSQLS LGNPRRRQVHHPELSNSNQFNGNTGNHLRMERLHTSLRKSLVLFVHLTAKFPLIIIFLLIVLYAIPASAAILALYIVFTI LFALPSFLILYFAYPSLDWLVREIIN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 265 | 265 | 2.6E-139 | – | |
| Phobius | 1 | 87 | 87 | - | – | |
| PANTHER | 1 | 265 | 265 | 2.6E-139 | – | |
| Gene3D | 32 | 138 | 107 | 3.1E-12 | ||
| SUPERFAMILY | 36 | 101 | 66 | 6.01E-10 | – | |
| ProSiteProfiles | 45 | 100 | 56 | 10.232 | ||
| Pfam | 45 | 97 | 53 | 2.6E-8 | ||
| ProSitePatterns | 64 | 73 | 10 | - | ||
| Phobius | 88 | 107 | 20 | - | – | |
| Phobius | 108 | 200 | 93 | - | – | |
| Phobius | 201 | 225 | 25 | - | – | |
| TMHMM | 202 | 224 | 23 | - | – | |
| Phobius | 226 | 230 | 5 | - | – | |
| Phobius | 231 | 254 | 24 | - | – | |
| TMHMM | 231 | 253 | 23 | - | – | |
| Phobius | 255 | 266 | 12 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0508900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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