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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0529100 |
| Transcript ID | LotjaGi1g1v0529100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine--tRNA ligase; TAIR: AT1G09620.1 ATP binding/leucine-tRNA ligases/aminoacyl-tRNA ligase; Swiss-Prot: sp|F4I116|SYLC_ARATH Leucine--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1J9U5|I1J9U5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0529100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:105559791..105564220) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTCCTACAATTCAATTCATGTAATCCAAAGTTAACTGGGTCGTCGGGTCGCTCACATTTCAAAACGGATCGATTCAT TGATTCATTGGTTTTTAATTTTTAAAACCGTGAATCGAACCAATCTACATTGATTTTTATCGGGTTGGATCGGTTTTGAA CCGAATAACAGTAAAAACCAATCCAATAACTTTGATTCGGTTCGTGGGTTTCATCGGATGAATAGAATGAGCACCCCTAG ATTTGGGAGTCAGGGTTTGTAAGTTTCAATTTGCAAGAGCAGAGACAGCACCTGCAGCTATGGATTCCAGATTGGGATGG TAGCACTGCGACGAGTTTCAAGGTAGTATTTCAAACTTCACTGTCTCCATCATTCAACAATCACTTAGTTTCATCTTTTT TCCATGTACAGTTGCCGTCGATTACTCACAAGCATGGCAGCGACCGAGGGTGGCGGCGGTGGTGGTGGGAAGAGCTTCGC ACGGAGGGACCGTCTGCGGGAAATTGACCTCAAGGTTCAGAAATGGTGGGAAGACGCCGACGTATTCCGGTCAGAACCCG GCGACGCGCCGCCTAAGCCGGGCGAGAAATTCTTCGGGAACTTCCCTTTCCCTTACATGAACGGTTTCCTCCATCTGGGT CATGCGTTTTCCGTCTCCAAGCTCGAGTTCGCCGCCGCTTTCCACAGACTCAGAGGCGCCAATGTGCTCCTCCCCTTCGC CTTCCACTGCACCGGCATGCCCATCAAGGCCTCCGCCGATAAGCTCGCCAGAGAGATCCAGCGCTTCGGGGACCCGCCGG TGTTCCCTAAGGAAGGAGAAGAAGAACAACCAGAACAACAAGAGGAGGAGGCTCCTGTGGATGCAAATGAAGGTGCCCCT GAGAAATTCAAAGGGAAGAAGTCCAAGGCTGCTGCTAAATCAGGAACACAGGTGTACCAATGGGAGATTATGAGAAGTGT TGGAATTTCTGATGATGAGATATCAAAGTTTCAGGACCCTTACAAGTGGCTTTCTTACTTCCCTCCTTTGGCTGTGGAGG ATCTTAAGGCTTTTGGGTTGGGTTGTGATTGGAGAAGATCCTTTATTACCACAGACATCAACCCATTTTTTGATTCTTTT GTTAGGTGGCAGATGAGGAAGTTGAAGTCCATGGGAAAAATTGTGAAGGATTTGAGGTATACAATATATTCTCCTTTGGA TGGACAACCCTGTGCTGATCATGATAGAGCAACTGGTGAAGGTGTTCAGCCACAAGAGTACACTGTTATCAAGATGGAGT TGGTTTCACCTTTTCCTCCAAAGTTTGAGGTGCTGGAGGGGAAGAGGGTGTTCCTTGCTGCTGCAACTTTGAGGCCTGAG ACTATGTATGGCCAAACAAATGCTTGGGTGTTGCCTGATGGGAAATATGGGGCATTTGAAATCAATGAGACTGAGGTGTT TGTTATGGCACATAGAGCGGCGCTTAACCTTGCCTACCAGAACCACTCACGTGTCCCTGAGAAACCTACTTGCTTGCTTG AGCTCACTGGTCATGACTTGATTGGACTCCCTTTGAAATCGCCACTTTCGTTTAATGACACCATTTATGCACTTCCTATG TTGTCTATTTTGATGGATAAAGGTACTGGGGTTGTGACCAGTGTGCCTAGTGATGCCCCTGATGACTACATGGCCTTGAA TGATTTGAAGTCAAAGCCAGCATTCAGGTCAAAGTTTGGGGTGAAGGATGAATGGGTGATGCCCTTTGAGATTGTGCCTA TCATTGAAGTTCCGCAGTTTGGGAATAAGTGTGCGGAGACAGTGTGTTTGCAGATGAAAATCAAGAGTCAGAATGAGAAA GAGAAACTTGCAGAAGCCAAGAAGCAAACTTACTTGAAAGGTTTCACTGAAGGAACAATGATTGTTGGAGAATTCGCAGG GAAGAAAGTCCAGGAAGCTAAACCCTTGATTAGGAGCAAGCTTTTGGAAACAGGTCAGCATTCATCTTCAGTCCTCACAT TATTGTTTTTAATGTATGCATAATCTTATTATTCTTATACATGTCAGAATTGATTGAGATCTGTTCCTACTTCCTGCTTT ATTCAATTATGTTTGGTTAAATTCTTCAAAATCTTACAGCAACGTATGATTATTATTTATTAGAGGGCAATATGAGATAG CTTTGTGCTAATGATAAACCACTAAAATTTATTATATTTTTCCACAGGTAAATATAAATACTTGAAAACAGTTTTTACTT TTGTTATTTGCTTGTATCATTCTTGGTCATCTCACCCCTTGTGCTTGAATTTTTGGTTCCCACACTTTCAGGTCAGGCAA TTGTGTACAGTGAGCCAGAGAAGCGGGTGATGTCAAGATCTGGTGATGAATGTGTTGTAGCTTTGACAGATCAGTGGTAC ATTACATATGGGGAATCAGAATGGAAGAAGTTAGCTGAGGAATGCTTGTCTAGCATGAGCTTGTTTTCTGATGAGACAAG ACATGGATTTGAGCATACTTTAAGTTGGTTGAACCAGTGGGCTTGCTCACGATCATTTGGTCTCGGGACACGCATACCAT GGGATGAACAGTTCTTAGTTGAGTCTTTATCGGATTCCACCATTTACATGGCTTATTACACTATTGCGCATTATTTGCAG AATGGTGACATGTACGGATCCAGCGAATTTGCTATCAAACCTCAACAGCTAACTGATGATGTCTGGGATTATATTTTCTG TGATGGGCCTTTCCCTAAATCCACTGATATTTCGTCGTCGCTTTTAGAAAAAATGAAGAAGGAATTTGAGTATTGGTATC CATTTGATCTTCGAGTTTCCGGTAAGGATCTCCTCCAGAATCATCTTACCTTCTGCATTTACACCCATACTGCAATTATG TCCAAGCATCACTGGCCTCGTGGGTTTAGATGCAATGGTCACATAATGCTCAATTCTGAGAAAATGTCCAAGTCCACTGG AAATTTCAGGACTATTCGACAGGCAATTGAGGAGTTCTCTGCTGATGCTACTCGATTCTCTTTGGCTGATGCTGGTGATG GCGTTGATGATGCAAATTTTGTCTTTGAGACGGCAAATGCTGCAATTCTCCGGCTTACCAAAGAGATTGCATGGTATGAA GAGATTCTGGCAGCAGAATCTTCTATGAGAACTGGCCCCCCGTCTACTTATGCTGATCGTGTGTTTGCCAATGAGCTTAA CATTGCTGTCAAAACAACTGAGCAAAATTACTCCAACTACATGTTTCGAGAAGCCCTCAAGACTGGCTTTTTTGATCTTC AAACTGCTAGGGATGAGTATAGATTCTCATGTGGGGTTGGAGGTTACAATCGTGAGTTGGTGTGGCGTTTTATGGACGTG CAGACACGTCTTCTAGCACCTATATGTCCTCATTATGCAGAGTTTATTTGGAGAGAGCTTTTGAAGAAGGATGGTTTTGC AGTGAAGGCAGGATGGCCAACTGCTGATGCTCCTGATCTTACATTGAAGAGTGCCAATAAATATCTGCAGGATTCTATTG TTCTGATGAGGAAGTTGCTTCAGAAGCAACTTTCAGGCTCAAAGAAAGCAAATAAGAAAGGTGCTCCGGTTGCATCACTG ACAGAAAACAAGGTAACGGGCTTGGTATATGTAACTGAACAATTTGATGGTTGGAAAGCGGAGTGCCTGAACATTCTCCA GAACAAATTTAACAGAGATACTCAAACTTTTGCTCCAGACTCTGAGATAATGGAAGCTTTACAACAAAGTTCTGTAGGTC AATCTTCTAATTTTAAACAAATTCAAAAGCAATGTATGCCTTTCTTGAGGTTTAAGAAGGAGGAAGCCATTAAAATTGGG GCTCAAGCACTGGATTTGAGATTGCCATTTGGGGAAATTGAGGTTCTTAGGGAAAACTTGGACTTGATCAAGAGACAGAT TAATCTAGAACATGTGGAAATTTTATCTGCAGCAGCTGCTGATGCTGTGGCTAAAGCTGGATCTTTAGCTTCTCTGCTAA ATCAAAATCCTCCTTCCCCAGGAAATCCAACTGCAATCTTTTTAACTCAGTAGCTACTACTGGGTCAGTCTCTGGAAATT CCCCTTGCATCCGAACATTATTTATCTTTTTTTTTTTTGATATTTATGTAAATGGATGGCTGAAGTTTGAGTGAAGTTTT TGTGAAGTTCAGCATTGAACCTTTAGTGTTCTACGTTTCTGTCTTTTTCTAATTTGAAATTTTAGCTTTTTTCTGTAATT TTTCCAGTTTTTCTTGTTCTGTAATTTACATCCTTTACTGCAGTACTCTGTAGTTGACAAAATTTGTCAGCAGTGTAAAG AGATGATGTTTTTGGTACCTCTTTTTGAATGAAAAACTGCTTCAGTGACAATCTGATGTATACAAGTCTCTTTATTGTTC TTACTGTTCCAGCACTCTGAAAGATTACAT
CDS sequence (LotjaGi1g1v0529100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTAGCACTGCGACGAGTTTCAAGTTGCCGTCGATTACTCACAAGCATGGCAGCGACCGAGGGTGGCGGCGGTGGTGG TGGGAAGAGCTTCGCACGGAGGGACCGTCTGCGGGAAATTGACCTCAAGGTTCAGAAATGGTGGGAAGACGCCGACGTAT TCCGGTCAGAACCCGGCGACGCGCCGCCTAAGCCGGGCGAGAAATTCTTCGGGAACTTCCCTTTCCCTTACATGAACGGT TTCCTCCATCTGGGTCATGCGTTTTCCGTCTCCAAGCTCGAGTTCGCCGCCGCTTTCCACAGACTCAGAGGCGCCAATGT GCTCCTCCCCTTCGCCTTCCACTGCACCGGCATGCCCATCAAGGCCTCCGCCGATAAGCTCGCCAGAGAGATCCAGCGCT TCGGGGACCCGCCGGTGTTCCCTAAGGAAGGAGAAGAAGAACAACCAGAACAACAAGAGGAGGAGGCTCCTGTGGATGCA AATGAAGGTGCCCCTGAGAAATTCAAAGGGAAGAAGTCCAAGGCTGCTGCTAAATCAGGAACACAGGTGTACCAATGGGA GATTATGAGAAGTGTTGGAATTTCTGATGATGAGATATCAAAGTTTCAGGACCCTTACAAGTGGCTTTCTTACTTCCCTC CTTTGGCTGTGGAGGATCTTAAGGCTTTTGGGTTGGGTTGTGATTGGAGAAGATCCTTTATTACCACAGACATCAACCCA TTTTTTGATTCTTTTGTTAGGTGGCAGATGAGGAAGTTGAAGTCCATGGGAAAAATTGTGAAGGATTTGAGGTATACAAT ATATTCTCCTTTGGATGGACAACCCTGTGCTGATCATGATAGAGCAACTGGTGAAGGTGTTCAGCCACAAGAGTACACTG TTATCAAGATGGAGTTGGTTTCACCTTTTCCTCCAAAGTTTGAGGTGCTGGAGGGGAAGAGGGTGTTCCTTGCTGCTGCA ACTTTGAGGCCTGAGACTATGTATGGCCAAACAAATGCTTGGGTGTTGCCTGATGGGAAATATGGGGCATTTGAAATCAA TGAGACTGAGGTGTTTGTTATGGCACATAGAGCGGCGCTTAACCTTGCCTACCAGAACCACTCACGTGTCCCTGAGAAAC CTACTTGCTTGCTTGAGCTCACTGGTCATGACTTGATTGGACTCCCTTTGAAATCGCCACTTTCGTTTAATGACACCATT TATGCACTTCCTATGTTGTCTATTTTGATGGATAAAGGTACTGGGGTTGTGACCAGTGTGCCTAGTGATGCCCCTGATGA CTACATGGCCTTGAATGATTTGAAGTCAAAGCCAGCATTCAGGTCAAAGTTTGGGGTGAAGGATGAATGGGTGATGCCCT TTGAGATTGTGCCTATCATTGAAGTTCCGCAGTTTGGGAATAAGTGTGCGGAGACAGTGTGTTTGCAGATGAAAATCAAG AGTCAGAATGAGAAAGAGAAACTTGCAGAAGCCAAGAAGCAAACTTACTTGAAAGGTTTCACTGAAGGAACAATGATTGT TGGAGAATTCGCAGGGAAGAAAGTCCAGGAAGCTAAACCCTTGATTAGGAGCAAGCTTTTGGAAACAGGTCAGGCAATTG TGTACAGTGAGCCAGAGAAGCGGGTGATGTCAAGATCTGGTGATGAATGTGTTGTAGCTTTGACAGATCAGTGGTACATT ACATATGGGGAATCAGAATGGAAGAAGTTAGCTGAGGAATGCTTGTCTAGCATGAGCTTGTTTTCTGATGAGACAAGACA TGGATTTGAGCATACTTTAAGTTGGTTGAACCAGTGGGCTTGCTCACGATCATTTGGTCTCGGGACACGCATACCATGGG ATGAACAGTTCTTAGTTGAGTCTTTATCGGATTCCACCATTTACATGGCTTATTACACTATTGCGCATTATTTGCAGAAT GGTGACATGTACGGATCCAGCGAATTTGCTATCAAACCTCAACAGCTAACTGATGATGTCTGGGATTATATTTTCTGTGA TGGGCCTTTCCCTAAATCCACTGATATTTCGTCGTCGCTTTTAGAAAAAATGAAGAAGGAATTTGAGTATTGGTATCCAT TTGATCTTCGAGTTTCCGGTAAGGATCTCCTCCAGAATCATCTTACCTTCTGCATTTACACCCATACTGCAATTATGTCC AAGCATCACTGGCCTCGTGGGTTTAGATGCAATGGTCACATAATGCTCAATTCTGAGAAAATGTCCAAGTCCACTGGAAA TTTCAGGACTATTCGACAGGCAATTGAGGAGTTCTCTGCTGATGCTACTCGATTCTCTTTGGCTGATGCTGGTGATGGCG TTGATGATGCAAATTTTGTCTTTGAGACGGCAAATGCTGCAATTCTCCGGCTTACCAAAGAGATTGCATGGTATGAAGAG ATTCTGGCAGCAGAATCTTCTATGAGAACTGGCCCCCCGTCTACTTATGCTGATCGTGTGTTTGCCAATGAGCTTAACAT TGCTGTCAAAACAACTGAGCAAAATTACTCCAACTACATGTTTCGAGAAGCCCTCAAGACTGGCTTTTTTGATCTTCAAA CTGCTAGGGATGAGTATAGATTCTCATGTGGGGTTGGAGGTTACAATCGTGAGTTGGTGTGGCGTTTTATGGACGTGCAG ACACGTCTTCTAGCACCTATATGTCCTCATTATGCAGAGTTTATTTGGAGAGAGCTTTTGAAGAAGGATGGTTTTGCAGT GAAGGCAGGATGGCCAACTGCTGATGCTCCTGATCTTACATTGAAGAGTGCCAATAAATATCTGCAGGATTCTATTGTTC TGATGAGGAAGTTGCTTCAGAAGCAACTTTCAGGCTCAAAGAAAGCAAATAAGAAAGGTGCTCCGGTTGCATCACTGACA GAAAACAAGGTAACGGGCTTGGTATATGTAACTGAACAATTTGATGGTTGGAAAGCGGAGTGCCTGAACATTCTCCAGAA CAAATTTAACAGAGATACTCAAACTTTTGCTCCAGACTCTGAGATAATGGAAGCTTTACAACAAAGTTCTGTAGGTCAAT CTTCTAATTTTAAACAAATTCAAAAGCAATGTATGCCTTTCTTGAGGTTTAAGAAGGAGGAAGCCATTAAAATTGGGGCT CAAGCACTGGATTTGAGATTGCCATTTGGGGAAATTGAGGTTCTTAGGGAAAACTTGGACTTGATCAAGAGACAGATTAA TCTAGAACATGTGGAAATTTTATCTGCAGCAGCTGCTGATGCTGTGGCTAAAGCTGGATCTTTAGCTTCTCTGCTAAATC AAAATCCTCCTTCCCCAGGAAATCCAACTGCAATCTTTTTAACTCAGTAG
Protein sequence (LotjaGi1g1v0529100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVALRRVSSCRRLLTSMAATEGGGGGGGKSFARRDRLREIDLKVQKWWEDADVFRSEPGDAPPKPGEKFFGNFPFPYMNG FLHLGHAFSVSKLEFAAAFHRLRGANVLLPFAFHCTGMPIKASADKLAREIQRFGDPPVFPKEGEEEQPEQQEEEAPVDA NEGAPEKFKGKKSKAAAKSGTQVYQWEIMRSVGISDDEISKFQDPYKWLSYFPPLAVEDLKAFGLGCDWRRSFITTDINP FFDSFVRWQMRKLKSMGKIVKDLRYTIYSPLDGQPCADHDRATGEGVQPQEYTVIKMELVSPFPPKFEVLEGKRVFLAAA TLRPETMYGQTNAWVLPDGKYGAFEINETEVFVMAHRAALNLAYQNHSRVPEKPTCLLELTGHDLIGLPLKSPLSFNDTI YALPMLSILMDKGTGVVTSVPSDAPDDYMALNDLKSKPAFRSKFGVKDEWVMPFEIVPIIEVPQFGNKCAETVCLQMKIK SQNEKEKLAEAKKQTYLKGFTEGTMIVGEFAGKKVQEAKPLIRSKLLETGQAIVYSEPEKRVMSRSGDECVVALTDQWYI TYGESEWKKLAEECLSSMSLFSDETRHGFEHTLSWLNQWACSRSFGLGTRIPWDEQFLVESLSDSTIYMAYYTIAHYLQN GDMYGSSEFAIKPQQLTDDVWDYIFCDGPFPKSTDISSSLLEKMKKEFEYWYPFDLRVSGKDLLQNHLTFCIYTHTAIMS KHHWPRGFRCNGHIMLNSEKMSKSTGNFRTIRQAIEEFSADATRFSLADAGDGVDDANFVFETANAAILRLTKEIAWYEE ILAAESSMRTGPPSTYADRVFANELNIAVKTTEQNYSNYMFREALKTGFFDLQTARDEYRFSCGVGGYNRELVWRFMDVQ TRLLAPICPHYAEFIWRELLKKDGFAVKAGWPTADAPDLTLKSANKYLQDSIVLMRKLLQKQLSGSKKANKKGAPVASLT ENKVTGLVYVTEQFDGWKAECLNILQNKFNRDTQTFAPDSEIMEALQQSSVGQSSNFKQIQKQCMPFLRFKKEEAIKIGA QALDLRLPFGEIEVLRENLDLIKRQINLEHVEILSAAAADAVAKAGSLASLLNQNPPSPGNPTAIFLTQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 18 | 18 | - | – | |
| PANTHER | 29 | 1108 | 1080 | 0.0 | ||
| PANTHER | 29 | 1108 | 1080 | 0.0 | – | |
| SUPERFAMILY | 38 | 785 | 748 | 3.07E-93 | – | |
| TIGRFAM | 39 | 1081 | 1043 | 2.5E-273 | ||
| Pfam | 44 | 126 | 83 | 1.4E-7 | ||
| ProSitePatterns | 76 | 87 | 12 | - | ||
| MobiDBLite | 135 | 174 | 40 | - | – | |
| Pfam | 211 | 778 | 568 | 6.2E-31 | ||
| SUPERFAMILY | 306 | 540 | 235 | 7.41E-29 | ||
| Coils | 474 | 494 | 21 | - | – | |
| CDD | 553 | 781 | 229 | 6.72324E-69 | – | |
| CDD | 779 | 899 | 121 | 1.31119E-43 | – | |
| Gene3D | 782 | 899 | 118 | 6.2E-9 | – | |
| SUPERFAMILY | 812 | 948 | 137 | 3.71E-18 | ||
| Pfam | 818 | 939 | 122 | 4.2E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA editing activity | The hydrolysis of an incorrectly aminoacylated tRNA. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Leucine-tRNA ligase activity | Catalysis of the reaction: L-leucine + ATP + tRNA(Leu) = AMP + diphosphate + 2 H(+) + Leu-tRNA(Leu). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Leucyl-tRNA aminoacylation | The process of coupling leucine to leucyl-tRNA, catalyzed by leucyl-tRNA synthetase. The leucyl-tRNA synthetase is a class-I synthetase. The activated amino acid is transferred to the 2'-OH group of a leucine-accetping tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification. |
Expression pattern of LotjaGi1g1v0529100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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