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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0535000 |
| Transcript ID | LotjaGi1g1v0535000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Elongation factor Tu; TAIR: AT1G04170.1 eukaryotic translation initiation factor 2 gamma subunit; Swiss-Prot: sp|Q24208|IF2G_DROME Eukaryotic translation initiation factor 2 subunit 3; TrEMBL-Plants: tr|C6TAN4|C6TAN4_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0535000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:106333126..106336510) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCGCGGAAGGGTTTGATGGAACAGGACCTCAGCAAGCTGGATGTGGCTAAGTTGCATCCACTTTCTCCTGAAGTCAT TTCTCGCCAAGCTACTATTAACATTGGTAATTTGTTCTCATGTTTTGGGATGCAATTGTTTCCAATTTGCTTCTGCTACT TGTACTGATGAATAATAATATTGTAACCTGACAGGCACCATAGGCCATGTGGCTCATGGAAAGTCAACAGTTGTGAAAGC AATATCAGGCGTTCAGGTATTCCTTTGTTTCAAAATTTTCTCTACTTTTGTTGGAGGTATAGGGGTGAGGAGGATTATGG TATTTAACTATGCATTGCATTGTATATATGTAGTTCCTGGTATGTGGTATTCTGTAAGATTCTTTGTTATGTCGTGTGTG ATATGTTTTAAATGGAAAGAAAGCATCTACTCGATTGTCAGAACTCATAAGGGTTATTGCTTAGATTTTTTATTTCACTC AGTGTAAGTAGCTGATGGGTACATGAAGTTTGTCAAATATGAGTTGCCATAGAATTAGGAAGTGGGTTTGTTTAAATACA TGGATTTTAGTTTGCCATGGATAAATTGTGTAGTTAGATTCATCTGATTAACTATAGTATATAGTTTGTGGAAGCCACCC CTCCCCTGTCCAAAGAAGTGGACAACTTCTCTGGGTGGTTGCATAGATCTTTGACAACATTCGGATTAATTGAATTTTCC ACCCTTTTTTGTGCATCTTTAATCTCTAAGAAAGCTTGTTTATGCATAACCATGCCATATTGTATATTTTAATATATTTT CTGTAATCTTCGCATGTTTAAACTGTCCACCTCTGGTTTCCCGTGAATGTTGTGCAGACTGTGCGTTTTAAGAATGAGTT GGAACGTAACATTACAATCAAGCTTGGCTATGCGAATGCCAAAATATATAAATGTGAAGATGAACGGTGTCCAAGGCCTA TGAGCTACAAGTAGGTATTTATTTTGCATTCGCTATTTTATTATGAGGTTATTTCAAAATTTGGTGATGTGATAAAATGT TTTGCACAGGGCTTATGGAAGTGGAAAGGAAGATAGTCCTATGTGTGATGTACCAGGGTTTGAGAACTCCAAGATGAAAT TGTTGAGACATGTTTCTTTTGTTGATTGCCCGGTAAATTTTTGAACTCTCATGTCATTTTGGGCTGTTTTATGCTCCATT TGATTAGATTTTGAATATAATATAGAATGCTTTTTTTTTTTCATATACCTGCACATTGGGTATTACTTTCCCCCCCTGTC CGAGTATACATTCTCCCAATTCTTTAAATCACAAGAAGCAATGGGTATTTTAATTCGTGTTTAAGTATATATATATATAT ATATATATATCTGTGTGTGTGTGTGTTTATGTGTGAATGTACTTATATACCTGTATGTATATAGAAAAATTATCATGTGC TCCAGAGCAAGAGATAAATTGTACACCTAAACCAAGTTAGGAATTATTCTCTCTCTCTCATTAGTTGCAATATAGAAGTG GTTCACATCCAATGGTACAGAGTAAGAGAAATCTCATGCTGTAGGAGTACCTAAAATTTGCTCGTGTATTTTGCTTTTAC TTGTTTCCATAGATGTGACATTTTCATGTTTCTGTGGGTATCCTTTTTATAAGTCAGGTGCTCACAGTTTGCCACACTAT GGTAAATCATTAAATATATATTTAGCTTACTTGCTTTTAATTATGATATCTGTCTCTACTTTGCCAATTTCTGTAGGGAC ATGATATTCTCATGGCTACAATGCTTAATGGAGCAGCAATCATGGACGGAGCTTTGCTACTCATTGCTGCTAATGAAAGC TGCCCTCAACCACAAACTTCTGAGCATTTAGCTGCTGTGGAAATTATGCGTCTACAGCACATTATAATCCTTCAGAACAA GGTAGACCTGATTCAAGAAAATGTGGCAATCAATCAGCATGAGGCGATTCAGAAGTTTATACAAGTAAGCCTTCTTTGAA GTGGTCTTTACTATAGAAGTGAATCCCGTTTTCAATAACTCACGTGATACTCTCCCCTTCTTTGGTGGCTTACCAGGGAA CTGTTGCTGGTGGTGCACCAGTGGTACCTATTTCAGCACAGTTGAAGTATAATATTGATGTCGTGTGTGAATATATTGTG AAAAAGATCCCAATCCCTGAAAGGAACTTCATTTCTCCACCAAATATGATAGTAATTCGATCATTTGACGTCAATAAACC CGGTTATGAGGTTGATGAAATAAAAGGAGGCGTAGCTGGTGGAAGCATTCTGAGGGTAAATAATTTTTTTACAATTTTCC TAATATGATTGATTTGCACTGACCTGACTTACAGATATTAGTATTTTTAATGTTTGGAGTGTTTTCTGCCTTCACATTTA TAATTCAGATTTTAAATTTCTTAGTTTATACATGGATGCTTAATGAATGAGAAACAAGTGGCCTTCTAATTTGTTGCATC TTTATTTTTTATCTTTGGATTTTGGAAACATTTTTACACGTTTAATTTCCAAAATACGTGGGAACTCTGCCATTTTTCAA ACCAGAATAGAGGATTCAACTTTGTGCCTTGATTTTTGTGTATAAACCAACCAATTGAGTCTGGTCTGACATGTAATGAC ATGTTCATTAAACCCCCAACAATTTGTTCTTTACAGGGTGTTTTGAAGTTCAACCAATTCATTGAAGTTCGACCTGGGAT AATTGTTAAAGACGACAGTGGAAACATTCGATGCACACCCATATACTCGAGAATAGTTTCATTGTATGCTGAACAAAATG AGCTTCAATTTGCTGTGCCGGGAGGCCTTATTGGTGTCGGGACAACGATGGATCCCACTTTGACACGTGCTGACAGGTTG GTAGGGCAAGTTCTTGGAGAGGTTGGATCACTGCCTGAGGTTTTTGTTGAACTTGAGGTAGGTTACTACAATTTATGCAT GCCTGCCATGACTGAGTTATCAATTAACTGAGTTATAATGCACATAGACAAGTGGGGATAAAGAGCTTACCTTTCAAATT ATCACTCATAACTTTAACTTTCACTCGGTGTTGCAGGTAAACTTTTTCTTGCTCCGGAGGCTTCTTGGTGTCCGGACAAA AGGCTCTGAGAGACAGGGTAAGGTAACTAAGCTGACTAAAACAGAGATGCTTATGTTGAACATAGGGTCAATGTCAACAG GTGCAAGAGTAATTGCTGTGAAGAATGACCTGGCGAAATTGCAACTTACTTCCCCCGTGTGCACTAGCAAGGGTGAGAAG ATTGCACTCAGTCGACGTGTCGAGAAGCATTGGCGCCTTATCGGGTGGGGTCAAATCCAAGCTGGACTCACCCTTGATGT CCCTCCTGCTCCTCTACTGAATTGA
CDS sequence (LotjaGi1g1v0535000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGCGGAAGGGTTTGATGGAACAGGACCTCAGCAAGCTGGATGTGGCTAAGTTGCATCCACTTTCTCCTGAAGTCAT TTCTCGCCAAGCTACTATTAACATTGGCACCATAGGCCATGTGGCTCATGGAAAGTCAACAGTTGTGAAAGCAATATCAG GCGTTCAGACTGTGCGTTTTAAGAATGAGTTGGAACGTAACATTACAATCAAGCTTGGCTATGCGAATGCCAAAATATAT AAATGTGAAGATGAACGGTGTCCAAGGCCTATGAGCTACAAGGCTTATGGAAGTGGAAAGGAAGATAGTCCTATGTGTGA TGTACCAGGGTTTGAGAACTCCAAGATGAAATTGTTGAGACATGTTTCTTTTGTTGATTGCCCGGGACATGATATTCTCA TGGCTACAATGCTTAATGGAGCAGCAATCATGGACGGAGCTTTGCTACTCATTGCTGCTAATGAAAGCTGCCCTCAACCA CAAACTTCTGAGCATTTAGCTGCTGTGGAAATTATGCGTCTACAGCACATTATAATCCTTCAGAACAAGGTAGACCTGAT TCAAGAAAATGTGGCAATCAATCAGCATGAGGCGATTCAGAAGTTTATACAAGGAACTGTTGCTGGTGGTGCACCAGTGG TACCTATTTCAGCACAGTTGAAGTATAATATTGATGTCGTGTGTGAATATATTGTGAAAAAGATCCCAATCCCTGAAAGG AACTTCATTTCTCCACCAAATATGATAGTAATTCGATCATTTGACGTCAATAAACCCGGTTATGAGGTTGATGAAATAAA AGGAGGCGTAGCTGGTGGAAGCATTCTGAGGGGTGTTTTGAAGTTCAACCAATTCATTGAAGTTCGACCTGGGATAATTG TTAAAGACGACAGTGGAAACATTCGATGCACACCCATATACTCGAGAATAGTTTCATTGTATGCTGAACAAAATGAGCTT CAATTTGCTGTGCCGGGAGGCCTTATTGGTGTCGGGACAACGATGGATCCCACTTTGACACGTGCTGACAGGTTGGTAGG GCAAGTTCTTGGAGAGGTTGGATCACTGCCTGAGGTTTTTGTTGAACTTGAGGTAAACTTTTTCTTGCTCCGGAGGCTTC TTGGTGTCCGGACAAAAGGCTCTGAGAGACAGGGTAAGGTAACTAAGCTGACTAAAACAGAGATGCTTATGTTGAACATA GGGTCAATGTCAACAGGTGCAAGAGTAATTGCTGTGAAGAATGACCTGGCGAAATTGCAACTTACTTCCCCCGTGTGCAC TAGCAAGGGTGAGAAGATTGCACTCAGTCGACGTGTCGAGAAGCATTGGCGCCTTATCGGGTGGGGTCAAATCCAAGCTG GACTCACCCTTGATGTCCCTCCTGCTCCTCTACTGAATTGA
Protein sequence (LotjaGi1g1v0535000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRKGLMEQDLSKLDVAKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIY KCEDERCPRPMSYKAYGSGKEDSPMCDVPGFENSKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQP QTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIQKFIQGTVAGGAPVVPISAQLKYNIDVVCEYIVKKIPIPER NFISPPNMIVIRSFDVNKPGYEVDEIKGGVAGGSILRGVLKFNQFIEVRPGIIVKDDSGNIRCTPIYSRIVSLYAEQNEL QFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVTKLTKTEMLMLNI GSMSTGARVIAVKNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGLTLDVPPAPLLN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 464 | 464 | 0.0 | – | |
| PANTHER | 1 | 464 | 464 | 0.0 | – | |
| SUPERFAMILY | 23 | 242 | 220 | 3.28E-39 | ||
| ProSiteProfiles | 30 | 239 | 210 | 34.828 | ||
| Gene3D | 30 | 240 | 211 | 1.2E-64 | – | |
| Pfam | 32 | 236 | 205 | 3.6E-25 | ||
| CDD | 33 | 240 | 208 | 3.75728E-134 | – | |
| PRINTS | 34 | 47 | 14 | 2.2E-11 | ||
| PRINTS | 123 | 133 | 11 | 2.2E-11 | ||
| PRINTS | 139 | 150 | 12 | 2.2E-11 | ||
| PRINTS | 177 | 186 | 10 | 2.2E-11 | ||
| SUPERFAMILY | 240 | 354 | 115 | 3.53E-36 | ||
| Gene3D | 241 | 356 | 116 | 4.3E-50 | – | |
| CDD | 241 | 354 | 114 | 5.12598E-64 | – | |
| Pfam | 268 | 350 | 83 | 3.9E-8 | ||
| SUPERFAMILY | 355 | 452 | 98 | 9.59E-31 | ||
| CDD | 357 | 451 | 95 | 3.27027E-46 | ||
| Gene3D | 357 | 456 | 100 | 2.9E-39 | – | |
| Pfam | 362 | 451 | 90 | 5.1E-36 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi1g1v0535000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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