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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0544300 |
| Transcript ID | LotjaGi1g1v0544300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent Clp protease proteolytic subunit; TAIR: AT1G66670.1 CLP protease proteolytic subunit 3; Swiss-Prot: sp|Q9SXJ6|CLPP3_ARATH ATP-dependent Clp protease proteolytic subunit 3, chloroplastic; TrEMBL-Plants: tr|I3S6Z8|I3S6Z8_LOTJA ATP-dependent Clp protease proteolytic subunit; Found in the gene: LotjaGi1g1v0544300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:107394214..107399679) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAAAGCCAACCTTCATCTTCTTCCTCCTCCCTCAACCTTCATCTTCTTCCTCCCAACTCCTTCAAAATTAGAAACC CAACACCATTGAAGCCCCACCAAACACCACCACTACCACCACCAAATCCCCTCTCTCACCCAACACCACCACCACCACCG AAACCCTCTTCCACCAACACCAACCTCCCTCAACCTTCATCTTCTTCCACCAAATCAAATCTCAGATTCGGAGGCTCCAA ATCCAGCTACTCCACCAGATGCGAGATTTCGACAAAGGTGGAGACTTTGCATCTGCATCTGGGTTGTCCAGTTTCGCATC TAGTTGAGAACTGAGAGGGGTTTTGCAAGGAGAAGTGGGTGGGGTGGAGAAAGGTTTTGGATTGAGTGAGAGGAAAGAGT TTATGGGAAGTAGGAAAGTTGAGAACTTTGAGATTGCAATAAGAAGAAGATGGGGTTTTGAAGAGAAAAAATCTGAACAA GATGCGAACAAAATCTGAAAATCTGAACAAGATGGGTTGAAAACTCTCATTGTGAAAATTAACTCATTGTTGAAGTTTAC TGGGTTCAATTTGTCATGAAGTTCGAAGCTTTTTGGATCTGAATGCTATTATTACCACTTTTTCTTTCAGAGGGTTGTGC AAGGATGCTCTGGATGCATTTAGGTTGACGTTTAATAGAGGAATGACACCAAACTCTGTTACCCTTTCCAGTATGTTACC AGTATTAGGAGAATTTGGATTTTTTAAGTCAGGAATGGAAGTCCGTGCATTTACTTTGAGGATGGGTATTGAGTTTGATA TTTTTATTGCTAATTCTATGATAGATATATTCAAATTGTGGATGCCTAAACCTTACTCAGAATGTCTTTAATATTTCTGT CAGGGATGAAGTTTCCTACAATATACTAATAATTGGCTGTTTTGAAACAAGTGAATGTTTTGAGTCTCTAAGTTTGTTTT CAGAAATGATACTCGCGGGCATGAGTCTCTGGGTTTGATTTTCAATAGAAGAAGATGAACAAAAATAAATTTAACATTAG AAAAAATTAGGGGTTTTAATTTTATTTTTTCTTGAATTAGAAATTTTTCTGGGTTTCTGAGTTTCAAATTTAAACTTTAA GATGAAGAAGATAATAGAGGTTGAAAATGATTAGGGATGAAGATGACAAAATTATGATAGAAATTCACTTTTTTTTTTTT ACATTGGGGACTAGTTTGCTACATTCAGGGACTAATTTGACGTATAAATTTTTTTCCCAACATTCTAGTTCCACGTAGGC ATTCCACGTAAGTAAAAAAATTACAAAAAAAAGATTCAGTTAACGGCAGTCTCATTTTTTAACGTCAAGGACTAGCGTGA ATGTGTTTTGCCACATTCAGGGACCACGGGAGGCATTTTAGAAGTTTAGGGACCAACTTGAAGGCGGCTGACACATTTAG GGACCAACTTCACTATTTACCCAAAGATTTGAGTCTACAATCTCCATCCTTCATCGCACAAAACAAAACCCAATACTCGT CACCAAAGCAACACAAGAGAAACGAAGATGGAATTGAGTTTAGCTTCAACGTGTATGCCATTGAGCTTCAAGTTGAAACT GAACCATGACCTCTTCCACTCTCAAATTCCCATTCTCACAGCTTCAACCAAAGCCACAAGAAGAACAACAACGAAACCCT TGTTCACCGTTAACGCTTCATCAACCACCAGACAAACCTTGTCCTCCAACTGGGACCTTCCCAATGATTTATCTGCATCT ACCGCTTCCCCATGGCTCCCCAAACTCGAAGAGCTTGACACCACCAACATGCTTCTCCGTCAGAGGATTGTCTTTTTGGG TTCTCAGGTTCTGAATCCCTTTGTTGTTATTTTGATGTTTTTAGAGTACCCTTTATCTTTGTGATTATGTTTTTTTGGGA AATTTCCAAACTTTTCATGTGGGTCATTCTAAAGCATGCTCACAGTCACAGTAGCAGATGAATGAACAAACTGGGGGGAA TAGGAAAAAAAATAGGAATTTTTTTTTGAATAGCTCAAAACATGTTTGATGTTGTTAATTTTGAGGGATTGTGTGCTTGT TAATGTTGGTTTATTTTGAAGAGACTACAATAGAAAGAAAGAACAAACATGGGAAATAAAATGCAACTGAAGAGACTGTT GTGTGTCTGATAATGTGTTTGTGTATGGCTTTTGTTTGAGCAGGTGGATGATATGACTGCAGATTTTATCATTAGTCAGC TTTTGTTTTTGGATGCTGAAGACTCAAAGAAAGACATCAAGTTGTTTATAAATTCACCTGGTGGTTCTGTTACTGCTGGT ATGTCAACAAAGTTTTGCTCCCGGTTCTGTCTCAGTTTGTTTTGTGTATTTGTTGTTCTTATATCCACTTGCTCAGAGAT GTTAAATTTCTTAATACCATACTCGAGTATTCAGGTTTTAATAGTTCACATGAATTATTTGCTAACACGCACTCAGCTAT CTATTGACTGCAACAGATAACTTAAATAAATATACCATTAACAATCAACCGAGTTGTTGGTCTGTGTTATACACTTATAC CTGACTGTTTTTAACTCTGATTCCCAAGCTAATTCAGATTTGTGAAAATAGAATTTCATTGTAACTCCTTAAAGGATCTC TTCATAAGAGATTGAATCTACTGAATCTGTGAGTATAGGCAAGGTACCTGCTATTAGTGAACTATGGGGCATTGTTCAAT TTAATGAATCTAAAAGTAAGAATGTCTTCTACTAAGTGCTCTTTCTTTGTTATACACTTATACCTGACTGCATGTAGGAA TGGGAATTTATGATGCCATGAAGTTATGCAAGGCAGATGTGTCTACTGTTTGTCTCGGGCTTGCAGCATCCATGGGCGCA TTTATCCTTGCTTCTGGTACTAAAGGGAAGAGGTATTGTATGCCTAATTCCAGAGTTATGATCCATCAGCCGCTTGGAAC TGCTGGTGGGAAAGTAAGACTGTCCGCTAATATCCTCTAACTTCGATTGTTCTCAATTAGAAATAGATATGAAGTTTGTC ATGGTTATTTTTGTTTGAGTTCATGTGATCATGTTAAAGTTTAAGCTAACCATATATTTCAACTAAATGTTAGAGAAACA TGGGGTATAGAAGGGGTAAAGTTCCCTTTGATTGCAAGTACCGATGTTTACTCAATTCCAATCTGAACCAAGTGAAAGAA CCTCTCTTTTAAAAAATAACAAACGCAAGCATGACCTGCTTTAGATCTGTTGCTTATATATAATTAATAAACTGATAAGG GGACGTTGTTTGATTTCATTTGCACTAATAAACAAACTACTTTTTTGCTTCCTCTGTCCACAATGATATTTCTGAGGTTT AGAACTAAGATGTTTATATTAATCAAATATGCCATTTGGCATTCTGAACTAAACTGATTTCTGTTTTCTCTGATGGGGGT GTCATTTATCGTTCTCCCATGGCTAGGCCACCTTTGAAGTAGATTCTTTTGGAAGATGATTTGGTTGAAAAACAACCTTT TTAGTTATTGAAAGATCAAGGTTTTATTGGTATGCCTATCGCCATGTAGATAAATTAGAATGGTGCCAAGTTTGATGTAT CAAAAATGATTGTGCAGGAACCAAGGTTGGTGACAATTATAATTGCAAAATATGGGTTTGTGAGGATCTAATTATTAGGG ACTTAGATTTATTTTATTTTTATTTTTCAATTTAGAGTCTATCATAGGAGATCTTTTATTTTTGGGTTGGGTTATCTTTT ATTTTGGTTAGTATATCTTTATGTTTTTGGGATTTAAGTTTATCTTATTAGGATTAGTTTATTATAAATAGGAGTACCCT CCTTAGGTTAGAATTATGTCTTTTTATTGAGTTGTCAGGGATTTTCCCTTTTGGAGAAGGTTCAGCTTCTTATTTATCTT GTTTTCCAGTTTTTATTATGTTAAACATACCAAAAAAATTATCCTTTATCCTCCTTTCTCTATCGATTCCACTGTTCGGA TTTTTCCGATCCTAATAGGTTTTAAATAAATACTTTTGATAATTATTATTAGAAGTATTTTACCTGGGATTCTTTTGGCT ATCTATTATGAATTCATAATGCCTGGTGTTATTACTATGCAATTCCAATATGGAGGATGCGTTATTTTCAAAATTAGCTT GTCTAAATGGTTCTTCTGGTGGCTCTGAGCAAAAACTTTGCTTTCTATATTGCTAAATAGTGAAACGTAATTACAGGCTA CAGAAATGAGCATCCGTATAAGAGAAATGGCATATCACAAGATCAAGATAAACAAAATACTGTCACGAATTACAGGGAAA CCTGAAGAGCAGGTTAGATATCAGATGGAACCTCCTTATCTTAATAACTAATTAGTTTGTTGTCCAATATGATACATGTT ATTCACCATTGTAGTTTATTTTATCTGCAGATTGAATTAGACACTGATCGCGATAACTTTATGAATCCTTGGGAAGCCAA GGAATATGGTTTAGTTGATGGTGTTATTGATGAGGGAAAACCAGGATTAATTGCACCGACGGCAGAAGCATCGGCACCTC CAAAAACTCGTGTTTGGGATCTATGGAAAGTTGAAGGAACTCGGAAAGCGAGGAAAAATATGCCCTCTGAACATAAGTTT TTACAGAATGCAATTCATGGCCAGGATAGTGATGATGATAAAGGTACTGGACAAGAAGAGGGAACAACTGCTGTATGAGT TAGGAAGCAAGGATTCTATTGCTTCTGTACTCCACAAATCTGTTTATTTTAACATTTATCACTTCCACAGTTCCACCAGA AGCTAAAAGGGATTTTTTGGTGTGTTATTGCTGGTCATATTTCATATTCCATTAAGATCCAGACTGTATATTAGTTATCA AAACTTGTATACCTCAAGTGTTAGGTGCATTAATGAATATAATGTTTCCTCCAGTTTGCTCTAGTTTGTCCCTGATGATT TGATTGCAATCTCTGCTGCATGCTTTTCTCATCTGGATTTAAGATTTTGCAAACTTCCCAAGTTTCTATGAGTTCCTTTT TTCAGGAAATGAAGCCAAACTGGTTAGCATTTTTTATCCTTCATGTTCTTCAAATAAGTTACTACTAGTTTTTTTTTTGA AAGAAGTTACTACTAATTATTAGTTCTAAAAGTAAGTGAATAGAACCGACATCATTTGTTAATGTTTAGATCTGTTGAAA AGTGTATAGTCGTATATAGTTCCTTGCCTTTACATATTATATTGTCATGACTTTGATGAAGAAAAAAAAAGAAAGAAACA AAGATCATATTTTGGGAGAGGAAAACGACTGATAAAAAAAATACAAAACTTAGAATGAATGAGTATGAATATATATATAT CTACCTGCCCAAATGCCAAATGAAAACCAATGATGACCACAACAAAGTTCGAGCTAGTCACCAAAGAATTTTGATCCTCT GGCGGTGGTTCTGTTCTGTACGTTGC
CDS sequence (LotjaGi1g1v0544300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATTGAGTTTAGCTTCAACGTGTATGCCATTGAGCTTCAAGTTGAAACTGAACCATGACCTCTTCCACTCTCAAAT TCCCATTCTCACAGCTTCAACCAAAGCCACAAGAAGAACAACAACGAAACCCTTGTTCACCGTTAACGCTTCATCAACCA CCAGACAAACCTTGTCCTCCAACTGGGACCTTCCCAATGATTTATCTGCATCTACCGCTTCCCCATGGCTCCCCAAACTC GAAGAGCTTGACACCACCAACATGCTTCTCCGTCAGAGGATTGTCTTTTTGGGTTCTCAGGTGGATGATATGACTGCAGA TTTTATCATTAGTCAGCTTTTGTTTTTGGATGCTGAAGACTCAAAGAAAGACATCAAGTTGTTTATAAATTCACCTGGTG GTTCTGTTACTGCTGGAATGGGAATTTATGATGCCATGAAGTTATGCAAGGCAGATGTGTCTACTGTTTGTCTCGGGCTT GCAGCATCCATGGGCGCATTTATCCTTGCTTCTGGTACTAAAGGGAAGAGGTATTGTATGCCTAATTCCAGAGTTATGAT CCATCAGCCGCTTGGAACTGCTGGTGGGAAAGCTACAGAAATGAGCATCCGTATAAGAGAAATGGCATATCACAAGATCA AGATAAACAAAATACTGTCACGAATTACAGGGAAACCTGAAGAGCAGATTGAATTAGACACTGATCGCGATAACTTTATG AATCCTTGGGAAGCCAAGGAATATGGTTTAGTTGATGGTGTTATTGATGAGGGAAAACCAGGATTAATTGCACCGACGGC AGAAGCATCGGCACCTCCAAAAACTCGTGTTTGGGATCTATGGAAAGTTGAAGGAACTCGGAAAGCGAGGAAAAATATGC CCTCTGAACATAAGTTTTTACAGAATGCAATTCATGGCCAGGATAGTGATGATGATAAAGGTACTGGACAAGAAGAGGGA ACAACTGCTGTATGA
Protein sequence (LotjaGi1g1v0544300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELSLASTCMPLSFKLKLNHDLFHSQIPILTASTKATRRTTTKPLFTVNASSTTRQTLSSNWDLPNDLSASTASPWLPKL EELDTTNMLLRQRIVFLGSQVDDMTADFIISQLLFLDAEDSKKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGL AASMGAFILASGTKGKRYCMPNSRVMIHQPLGTAGGKATEMSIRIREMAYHKIKINKILSRITGKPEEQIELDTDRDNFM NPWEAKEYGLVDGVIDEGKPGLIAPTAEASAPPKTRVWDLWKVEGTRKARKNMPSEHKFLQNAIHGQDSDDDKGTGQEEG TTAV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 54 | 304 | 251 | 1.5E-148 | – | |
| PANTHER | 54 | 304 | 251 | 1.5E-148 | ||
| Hamap | 63 | 258 | 196 | 36.653 | ||
| Gene3D | 77 | 259 | 183 | 1.1E-68 | – | |
| SUPERFAMILY | 83 | 257 | 175 | 3.44E-62 | ||
| Pfam | 83 | 257 | 175 | 9.1E-74 | ||
| CDD | 84 | 254 | 171 | 2.71728E-102 | ||
| PRINTS | 84 | 99 | 16 | 3.2E-47 | ||
| PRINTS | 124 | 144 | 21 | 3.2E-47 | ||
| PRINTS | 155 | 172 | 18 | 3.2E-47 | ||
| ProSitePatterns | 155 | 166 | 12 | - | ||
| PRINTS | 176 | 195 | 20 | 3.2E-47 | ||
| ProSitePatterns | 177 | 190 | 14 | - | ||
| PRINTS | 233 | 252 | 20 | 3.2E-47 | ||
| MobiDBLite | 301 | 324 | 24 | - | – | |
| MobiDBLite | 303 | 317 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
Expression pattern of LotjaGi1g1v0544300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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