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LotjaGi1g1v0556900.1

Overview

Field Value
Gene ID LotjaGi1g1v0556900
Transcript ID LotjaGi1g1v0556900.1
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Cytoplasmic tRNA 2-thiolation protein; TAIR: AT2G44270.1 repressor of lrx1; Swiss-Prot: sp|O64862|CTU1_ARATH Cytoplasmic tRNA 2-thiolation protein 1; TrEMBL-Plants: tr|G7J985|G7J985_MEDTR Cytoplasmic tRNA 2-thiolation protein 1; Found in the gene: LotjaGi1g1v0556900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:108886607..108889048) extracted from Lotus japonicus Gifu genome v1.2.

CCTCTACTTAAATATCAAATCAAATATAACACGATTTTGATAATTGATAACGAGGGTGTAGGGTTTGGTGATATCTGCTA ACAAAGGTGAGTAATGGAAGGTGAGGGTGAGAGGAAAAGAAGAAGTTTATGCTGCGTATGCAATGAAAGAAGACCTTCCC TGAAGAGGCCCAAAACACTCGAACACATTTGCAGGGAATGCTTCTACACCGTCTTCGAGGATGAGATCCACCAAGTCATC GTCACCAACAACCTCTTCCGCCGCGGCGAACGCGTCGCCATCGGTGCTTCCGGCGGCAAAGACTCCACCGTACTCGCTTA CGTCTTATCCAAACTCAACCGCGTCCACGATTACGGCCTCCACCTCTTCCTCTTGTCCGTCGACGAAGGCATCACCGGCT ACCGCGACGACTCGCTCCAAACCGTTCACAGAAACCAGATTCAGTACGGTTTGCCCCTCCAAGTCGTCTCCTACATGGAC CTCTACGGTTGGACCATGGATGACATCGTCAAGCTTATTGGTCTCAAGAACAACTGCACGTTCTGCGGTGTCTTCCGCCG TCAGGCACTTGATCGCGGTGCTGCTCTTTTGAAAGCTGATAAACTCGTTACTGGTCATAATGCTGATGATATTGCAGAGA CTGTTCTGCTTAATATCTTAAGAGGTGATATTGCTAGATTGAGTAGATGCACTTCAATCACCACTGGTGAAGATGGTCCA ATCCCTAGATGCAAGCCTTTCAAGTACACATATGAGAAGGAGATTGTAATATATCCTTGAAAAAAGCTTTGTTGTTGTCT ATTGGATGATGATCATACATAGTTATCGATAGCGCGCTGCTATCGCGCCGTCGTGTAGTGTTGTGGACCCCTGCTGCGAC GGGATTGCGGCCGCGAATTTCGCGGCCAATAGCGGCCTTCCCTTGTATGGGATTTCATTTTTGGGGGTCATCCGCGACAG GCCGCAATCCGCGATTGACTACTATGTGATCATATATGTTTATCATTTCGCTTCATTACATATGATATGATCTTCCTAGT TTCTGTTGTTAATCCTTGACCAGTTGATTACGTATGCGTATTTCAAGAGGCTGGACTACTTTTCGACAGAATGTAATGTT TATCTTTCAAATGTATGATGTGTGAATTTTATTTGTATATCAAACTCCCAAACTTATGATATTCTATTGAAATGACAATT TCAGGTATTTATTCTCCAAATGCATATCGTGGTTTTGCTCGAGAGTTTATCAAGGATTTGGAAAGAATGAGGCAAGTAGT AGCTCTGCTTCCGTCTTTTATTTAGTTATTTGACCACCATTGTATTGAATTGAGGACCTTATCATGAAATGCAGACCTAG AGCCATTCTAGACATCATCAAATCAGGGGAGAATTTCAGGATCTCTACTACCACCAAAATGCCGGAGCAGGGAACATGTG AACGCTGTGGTTATATTTCTAGTCAGGTATTTTCCTGAATATCCCCCCTTGGTTGAATATTAACAATGTGTATGAGAACC TCATGTGAACTGAGTTTTATTTTATGTATACGTTCCAATCAAAGATTGATGGTTCGTTTGTATAACATCATGTCAAATTA GTCTTACCTTAATACTACTGTAAATATGCTTTCACTTAGGCTTGTGCTTGATTTACCTTGAAGATTAGTTTGTTTTTTTT TTTGCCTTCTTTGGGCCGTATTGTTTAGTCTATGATGTTGCATTCTTAGTCCTGAAGGTCTTGTTTGGTCTTTCTCCGTC TTTGATTTCATTCTTGGATCATATGAACTAGAAAAGTTGAGGTAGAATAAATGTTTCATGTGCAGAAATGGTGCAAAGCT TGTGTTCTACTTGATGGATTGAATCGAGGTTTGCCTAAGCTGGGAATTGGACGGAGTCGGGGTGGTATTGGTGGTAAGGA TGGAAATGAAGGTGGAAAGAGCATCGAGAGCAAACAATGTGGAACTCTGGATTTCTAATTTGCCATATAGGCTTCATATG AACTCTGGTATTTTGATTAATTGAACATATCCTTTGAATTGTAGTTGACAAATCCATGAGCTATCTGGTTGATCTCATCT TAATTTGGTTGATAGAGTTCCATGAGTTGACTAGCTGAAGATATTTGACAAGTGGAGAAACAATATATATTGATTGGAGA CTCTCCTATAGTTTGATGTAGAGAGCACAGACGACCGCAAAACTACCACAAGATTAGATACTTTACCTGCTGTTAATCAA ATCATCTTCATCACTTAATGTATGTTTTTGTAACTTTGTTCTTAAACATTGGTCACTGTTGAGGGCTTATACAAACTGGC ATTTGTGTAAATGCATGTTAGTTGATCTTCAAAATTCTTTTTAACCAAAGATTTAAATAATTTCCCCAAGAAACAATGTA TGCATTTTTATTTGAATGCCAATTGACTCTGCCATAAAAAAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0556900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGGTGAGGGTGAGAGGAAAAGAAGAAGTTTATGCTGCGTATGCAATGAAAGAAGACCTTCCCTGAAGAGGCCCAA AACACTCGAACACATTTGCAGGGAATGCTTCTACACCGTCTTCGAGGATGAGATCCACCAAGTCATCGTCACCAACAACC TCTTCCGCCGCGGCGAACGCGTCGCCATCGGTGCTTCCGGCGGCAAAGACTCCACCGTACTCGCTTACGTCTTATCCAAA CTCAACCGCGTCCACGATTACGGCCTCCACCTCTTCCTCTTGTCCGTCGACGAAGGCATCACCGGCTACCGCGACGACTC GCTCCAAACCGTTCACAGAAACCAGATTCAGTACGGTTTGCCCCTCCAAGTCGTCTCCTACATGGACCTCTACGGTTGGA CCATGGATGACATCGTCAAGCTTATTGGTCTCAAGAACAACTGCACGTTCTGCGGTGTCTTCCGCCGTCAGGCACTTGAT CGCGGTGCTGCTCTTTTGAAAGCTGATAAACTCGTTACTGGTCATAATGCTGATGATATTGCAGAGACTGTTCTGCTTAA TATCTTAAGAGGTGATATTGCTAGATTGAGTAGATGCACTTCAATCACCACTGGTGAAGATGGTCCAATCCCTAGATGCA AGCCTTTCAAGTACACATATGAGAAGGAGATTGTAATGTATGCGTATTTCAAGAGGCTGGACTACTTTTCGACAGAATGT ATTTATTCTCCAAATGCATATCGTGGTTTTGCTCGAGAGTTTATCAAGGATTTGGAAAGAATGAGACCTAGAGCCATTCT AGACATCATCAAATCAGGGGAGAATTTCAGGATCTCTACTACCACCAAAATGCCGGAGCAGGGAACATGTGAACGCTGTG GTTATATTTCTAGTCAGAAATGGTGCAAAGCTTGTGTTCTACTTGATGGATTGAATCGAGGTTTGCCTAAGCTGGGAATT GGACGGAGTCGGGGTGGTATTGGTGGTAAGGATGGAAATGAAGGTGGAAAGAGCATCGAGAGCAAACAATGTGGAACTCT GGATTTCTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0556900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEGEGERKRRSLCCVCNERRPSLKRPKTLEHICRECFYTVFEDEIHQVIVTNNLFRRGERVAIGASGGKDSTVLAYVLSK LNRVHDYGLHLFLLSVDEGITGYRDDSLQTVHRNQIQYGLPLQVVSYMDLYGWTMDDIVKLIGLKNNCTFCGVFRRQALD RGAALLKADKLVTGHNADDIAETVLLNILRGDIARLSRCTSITTGEDGPIPRCKPFKYTYEKEIVMYAYFKRLDYFSTEC IYSPNAYRGFAREFIKDLERMRPRAILDIIKSGENFRISTTTKMPEQGTCERCGYISSQKWCKACVLLDGLNRGLPKLGI GRSRGGIGGKDGNEGGKSIESKQCGTLDF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF004976
8 320 313 2.3E-121
IPR035107
Hamap
MF_03053
11 323 313 51.519
IPR000541
PANTHER
PTHR11807
12 324 313 7.2E-175 –
PANTHER
PTHR11807:SF12
12 324 313 7.2E-175
IPR000541
Gene3D
G3DSA:3.40.50.620
12 318 307 6.6E-85
IPR014729
SUPERFAMILY
SSF52402
46 277 232 5.51E-51 –
CDD
cd01993
60 246 187 3.95575E-91 –
Pfam
PF01171
61 252 192 1.6E-14
IPR011063
TIGRFAM
TIGR00269
210 309 100 9.5E-20
IPR000541
Pfam
PF16503
288 318 31 2.1E-18
IPR032442
MobiDBLite
mobidb-lite
329 349 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000049
Molecular function TRNA binding Interacting selectively and non-covalently with transfer RNA.
Subterm of
GO:0002098
Biological process TRNA wobble uridine modification The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified.
Subterm of
GO:0008033
Biological process TRNA processing The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
Subterm of
GO:0034227
Biological process TRNA thio-modification The addition a sulfur atom to a nucleotide in a tRNA molecule.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0556900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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