Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0556900.2

Overview

Field Value
Gene ID LotjaGi1g1v0556900
Transcript ID LotjaGi1g1v0556900.2
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Cytoplasmic tRNA 2-thiolation protein; TAIR: AT2G44270.1 repressor of lrx1; Swiss-Prot: sp|O64862|CTU1_ARATH Cytoplasmic tRNA 2-thiolation protein 1; TrEMBL-Plants: tr|V7AXH9|V7AXH9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0556900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:108886650..108888584) extracted from Lotus japonicus Gifu genome v1.2.

TTGATAACGAGGGTGTAGGGTTTGGTGATATCTGCTAACAAAGGTGAGTAATGGAAGGTGAGGGTGAGAGGAAAAGAAGA AGTTTATGCTGCGTATGCAATGAAAGAAGACCTTCCCTGAAGAGGCCCAAAACACTCGAACACATTTGCAGGGAATGCTT CTACACCGTCTTCGAGGATGAGATCCACCAAGTCATCGTCACCAACAACCTCTTCCGCCGCGGCGAACGCGTCGCCATCG GTGCTTCCGGCGGCAAAGACTCCACCGTACTCGCTTACGTCTTATCCAAACTCAACCGCGTCCACGATTACGGCCTCCAC CTCTTCCTCTTGTCCGTCGACGAAGGCATCACCGGCTACCGCGACGACTCGCTCCAAACCGTTCACAGAAACCAGATTCA GTACGGTTTGCCCCTCCAAGTCGTCTCCTACATGGACCTCTACGGTTGGACCATGGATGACATCGTCAAGCTTATTGGTC TCAAGAACAACTGCACGTTCTGCGGTGTCTTCCGCCGTCAGGCACTTGATCGCGGTGCTGCTCTTTTGAAAGCTGATAAA CTCGTTACTGGTCATAATGCTGATGATATTGCAGAGACTGTTCTGCTTAATATCTTAAGAGGTGATATTGCTAGATTGAG TAGATGCACTTCAATCACCACTGGTGAAGATGGTCCAATCCCTAGATGCAAGCCTTTCAAGTACACATATGAGAAGGAGA TTGTAATATATCCTTGAAAAAAGCTTTGTTGTTGTCTATTGGATGATGATCATACATAGTTATCGATAGCGCGCTGCTAT CGCGCCGTCGTGTAGTGTTGTGGACCCCTGCTGCGACGGGATTGCGGCCGCGAATTTCGCGGCCAATAGCGGCCTTCCCT TGTATGGGATTTCATTTTTGGGGGTCATCCGCGACAGGCCGCAATCCGCGATTGACTACTATGTGATCATATATGTTTAT CATTTCGCTTCATTACATATGATATGATCTTCCTAGTTTCTGTTGTTAATCCTTGACCAGTTGATTACGTATGCGTATTT CAAGAGGCTGGACTACTTTTCGACAGAATGTAATGTTTATCTTTCAAATGTATGATGTGTGAATTTTATTTGTATATCAA ACTCCCAAACTTATGATATTCTATTGAAATGACAATTTCAGGTATTTATTCTCCAAATGCATATCGTGGTTTTGCTCGAG AGTTTATCAAGGATTTGGAAAGAATGAGGCAAGTAGTAGCTCTGCTTCCGTCTTTTATTTAGTTATTTGACCACCATTGT ATTGAATTGAGGACCTTATCATGAAATGCAGACCTAGAGCCATTCTAGACATCATCAAATCAGGGGAGAATTTCAGGATC TCTACTACCACCAAAATGCCGGAGCAGGGAACATGTGAACGCTGTGGTTATATTTCTAGTCAGGTATTTTCCTGAATATC CCCCCTTGGTTGAATATTAACAATGTGTATGAGAACCTCATGTGAACTGAGTTTTATTTTATGTATACGTTCCAATCAAA GATTGATGGTTCGTTTGTATAACATCATGTCAAATTAGTCTTACCTTAATACTACTGTAAATATGCTTTCACTTAGGCTT GTGCTTGATTTACCTTGAAGATTAGTTTGTTTTTTTTTTTGCCTTCTTTGGGCCGTATTGTTTAGTCTATGATGTTGCAT TCTTAGTCCTGAAGGTCTTGTTTGGTCTTTCTCCGTCTTTGATTTCATTCTTGGATCATATGAACTAGAAAAGTTGAGGT AGAATAAATGTTTCATGTGCAGAAATGGTGCAAAGCTTGTGTTCTACTTGATGGATTGAATCGAGGTTTGCCTAAGCTGG GAATTGGACGGAGTCGGGGTGGTATTGGTGGTAAGGATGGAAATGAAGGTGGAAAGAGCATCGAGAGCAAACAATGTGGA ACTCTGGATTTCTAA 

CDS sequence (LotjaGi1g1v0556900.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGGTGAGGGTGAGAGGAAAAGAAGAAGTTTATGCTGCGTATGCAATGAAAGAAGACCTTCCCTGAAGAGGCCCAA AACACTCGAACACATTTGCAGGGAATGCTTCTACACCGTCTTCGAGGATGAGATCCACCAAGTCATCGTCACCAACAACC TCTTCCGCCGCGGCGAACGCGTCGCCATCGGTGCTTCCGGCGGCAAAGACTCCACCGTACTCGCTTACGTCTTATCCAAA CTCAACCGCGTCCACGATTACGGCCTCCACCTCTTCCTCTTGTCCGTCGACGAAGGCATCACCGGCTACCGCGACGACTC GCTCCAAACCGTTCACAGAAACCAGATTCAGTACGGTTTGCCCCTCCAAGTCGTCTCCTACATGGACCTCTACGGTTGGA CCATGGATGACATCGTCAAGCTTATTGGTCTCAAGAACAACTGCACGTTCTGCGGTGTCTTCCGCCGTCAGGCACTTGAT CGCGGTGCTGCTCTTTTGAAAGCTGATAAACTCGTTACTGGTCATAATGCTGATGATATTGCAGAGACTGTTCTGCTTAA TATCTTAAGAGGTGATATTGCTAGATTGAGTAGATGCACTTCAATCACCACTGGTATTTATTCTCCAAATGCATATCGTG GTTTTGCTCGAGAGTTTATCAAGGATTTGGAAAGAATGAGACCTAGAGCCATTCTAGACATCATCAAATCAGGGGAGAAT TTCAGGATCTCTACTACCACCAAAATGCCGGAGCAGGGAACATGTGAACGCTGTGGTTATATTTCTAGTCAGAAATGGTG CAAAGCTTGTGTTCTACTTGATGGATTGAATCGAGGTTTGCCTAAGCTGGGAATTGGACGGAGTCGGGGTGGTATTGGTG GTAAGGATGGAAATGAAGGTGGAAAGAGCATCGAGAGCAAACAATGTGGAACTCTGGATTTCTAA 

Protein sequence (LotjaGi1g1v0556900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEGEGERKRRSLCCVCNERRPSLKRPKTLEHICRECFYTVFEDEIHQVIVTNNLFRRGERVAIGASGGKDSTVLAYVLSK LNRVHDYGLHLFLLSVDEGITGYRDDSLQTVHRNQIQYGLPLQVVSYMDLYGWTMDDIVKLIGLKNNCTFCGVFRRQALD RGAALLKADKLVTGHNADDIAETVLLNILRGDIARLSRCTSITTGIYSPNAYRGFAREFIKDLERMRPRAILDIIKSGEN FRISTTTKMPEQGTCERCGYISSQKWCKACVLLDGLNRGLPKLGIGRSRGGIGGKDGNEGGKSIESKQCGTLDF 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF 8 206 199 1.3E-75
Gene3D 12 283 272 1.9E-67
PANTHER 12 205 194 7.1E-146
PANTHER 12 205 194 7.1E-146
SUPERFAMILY 46 242 197 1.98E-39
CDD 60 200 141 3.51799E-67
Pfam 61 213 153 3.2E-12
PANTHER 204 289 86 7.1E-146
PIRSF 204 285 82 1.6E-24
PANTHER 204 289 86 7.1E-146
Pfam 253 283 31 1.8E-18
MobiDBLite 291 314 24 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function TRNA binding Interacting selectively and non-covalently with transfer RNA.
Biological process TRNA wobble uridine modification The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified.
Biological process TRNA processing The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
Biological process TRNA thio-modification The addition a sulfur atom to a nucleotide in a tRNA molecule.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0556900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…