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LotjaGi1g1v0556900.4

Overview

Field Value
Gene ID LotjaGi1g1v0556900
Transcript ID LotjaGi1g1v0556900.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Cytoplasmic tRNA 2-thiolation protein; TAIR: AT2G44270.1 repressor of lrx1; Swiss-Prot: sp|O64862|CTU1_ARATH Cytoplasmic tRNA 2-thiolation protein 1; TrEMBL-Plants: tr|G7J985|G7J985_MEDTR Cytoplasmic tRNA 2-thiolation protein 1; Found in the gene: LotjaGi1g1v0556900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:108886700..108888584) extracted from Lotus japonicus Gifu genome v1.2.

ATGGAAGGTGAGGGTGAGAGGAAAAGAAGAAGTTTATGCTGCGTATGCAATGAAAGAAGACCTTCCCTGAAGAGGCCCAA AACACTCGAACACATTTGCAGGGAATGCTTCTACACCGTCTTCGAGGATGAGATCCACCAAGTCATCGTCACCAACAACC TCTTCCGCCGCGGCGAACGCGTCGCCATCGGTGCTTCCGGCGGCAAAGACTCCACCGTACTCGCTTACGTCTTATCCAAA CTCAACCGCGTCCACGATTACGGCCTCCACCTCTTCCTCTTGTCCGTCGACGAAGGCATCACCGGCTACCGCGACGACTC GCTCCAAACCGTTCACAGAAACCAGATTCAGTACGGTTTGCCCCTCCAAGTCGTCTCCTACATGGACCTCTACGGTTGGA CCATGGATGACATCGTCAAGCTTATTGGTCTCAAGAACAACTGCACGTTCTGCGGTGTCTTCCGCCGTCAGGCACTTGAT CGCGGTGCTGCTCTTTTGAAAGCTGATAAACTCGTTACTGGTCATAATGCTGATGATATTGCAGAGACTGTTCTGCTTAA TATCTTAAGAGGTGATATTGCTAGATTGAGTAGATGCACTTCAATCACCACTGGTGAAGATGGTCCAATCCCTAGATGCA AGCCTTTCAAGTACACATATGAGAAGGAGATTGTAATATATCCTTGAAAAAAGCTTTGTTGTTGTCTATTGGATGATGAT CATACATAGTTATCGATAGCGCGCTGCTATCGCGCCGTCGTGTAGTGTTGTGGACCCCTGCTGCGACGGGATTGCGGCCG CGAATTTCGCGGCCAATAGCGGCCTTCCCTTGTATGGGATTTCATTTTTGGGGGTCATCCGCGACAGGCCGCAATCCGCG ATTGACTACTATGTGATCATATATGTTTATCATTTCGCTTCATTACATATGATATGATCTTCCTAGTTTCTGTTGTTAAT CCTTGACCAGTTGATTACGTATGCGTATTTCAAGAGGCTGGACTACTTTTCGACAGAATGTAATGTTTATCTTTCAAATG TATGATGTGTGAATTTTATTTGTATATCAAACTCCCAAACTTATGATATTCTATTGAAATGACAATTTCAGGTATTTATT CTCCAAATGCATATCGTGGTTTTGCTCGAGAGTTTATCAAGGATTTGGAAAGAATGAGGCAAGTAGTAGCTCTGCTTCCG TCTTTTATTTAGTTATTTGACCACCATTGTATTGAATTGAGGACCTTATCATGAAATGCAGACCTAGAGCCATTCTAGAC ATCATCAAATCAGGGGAGAATTTCAGGATCTCTACTACCACCAAAATGCCGGAGCAGGGAACATGTGAACGCTGTGGTTA TATTTCTAGTCAGGTATTTTCCTGAATATCCCCCCTTGGTTGAATATTAACAATGTGTATGAGAACCTCATGTGAACTGA GTTTTATTTTATGTATACGTTCCAATCAAAGATTGATGGTTCGTTTGTATAACATCATGTCAAATTAGTCTTACCTTAAT ACTACTGTAAATATGCTTTCACTTAGGCTTGTGCTTGATTTACCTTGAAGATTAGTTTGTTTTTTTTTTTGCCTTCTTTG GGCCGTATTGTTTAGTCTATGATGTTGCATTCTTAGTCCTGAAGGTCTTGTTTGGTCTTTCTCCGTCTTTGATTTCATTC TTGGATCATATGAACTAGAAAAGTTGAGGTAGAATAAATGTTTCATGTGCAGAAATGGTGCAAAGCTTGTGTTCTACTTG ATGGATTGAATCGAGGTTTGCCTAAGCTGGGAATTGGACGGAGTCGGGGTGGTATTGGTGGTAAGGATGGAAATGAAGGT GGAAAGAGCATCGAGAGCAAACAATGTGGAACTCTGGATTTCTAA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0556900.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGGTGAGGGTGAGAGGAAAAGAAGAAGTTTATGCTGCGTATGCAATGAAAGAAGACCTTCCCTGAAGAGGCCCAA AACACTCGAACACATTTGCAGGGAATGCTTCTACACCGTCTTCGAGGATGAGATCCACCAAGTCATCGTCACCAACAACC TCTTCCGCCGCGGCGAACGCGTCGCCATCGGTGCTTCCGGCGGCAAAGACTCCACCGTACTCGCTTACGTCTTATCCAAA CTCAACCGCGTCCACGATTACGGCCTCCACCTCTTCCTCTTGTCCGTCGACGAAGGCATCACCGGCTACCGCGACGACTC GCTCCAAACCGTTCACAGAAACCAGATTCAGTACGGTTTGCCCCTCCAAGTCGTCTCCTACATGGACCTCTACGGTTGGA CCATGGATGACATCGTCAAGCTTATTGGTCTCAAGAACAACTGCACGTTCTGCGGTGTCTTCCGCCGTCAGGCACTTGAT CGCGGTGCTGCTCTTTTGAAAGCTGATAAACTCGTTACTGGTCATAATGCTGATGATATTGCAGAGACTGTTCTGCTTAA TATCTTAAGAGGTGATATTGCTAGATTGAGTAGATGCACTTCAATCACCACTGGTGAAGATGGTCCAATCCCTAGATGCA AGCCTTTCAAGTACACATATGAGAAGGAGATTTTGATTACGTATGCGTATTTCAAGAGGCTGGACTACTTTTCGACAGAA TGTATTTATTCTCCAAATGCATATCGTGGTTTTGCTCGAGAGTTTATCAAGGATTTGGAAAGAATGAGACCTAGAGCCAT TCTAGACATCATCAAATCAGGGGAGAATTTCAGGATCTCTACTACCACCAAAATGCCGGAGCAGGGAACATGTGAACGCT GTGGTTATATTTCTAGTCAGAAATGGTGCAAAGCTTGTGTTCTACTTGATGGATTGAATCGAGGTTTGCCTAAGCTGGGA ATTGGACGGAGTCGGGGTGGTATTGGTGGTAAGGATGGAAATGAAGGTGGAAAGAGCATCGAGAGCAAACAATGTGGAAC TCTGGATTTCTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0556900.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEGEGERKRRSLCCVCNERRPSLKRPKTLEHICRECFYTVFEDEIHQVIVTNNLFRRGERVAIGASGGKDSTVLAYVLSK LNRVHDYGLHLFLLSVDEGITGYRDDSLQTVHRNQIQYGLPLQVVSYMDLYGWTMDDIVKLIGLKNNCTFCGVFRRQALD RGAALLKADKLVTGHNADDIAETVLLNILRGDIARLSRCTSITTGEDGPIPRCKPFKYTYEKEILITYAYFKRLDYFSTE CIYSPNAYRGFAREFIKDLERMRPRAILDIIKSGENFRISTTTKMPEQGTCERCGYISSQKWCKACVLLDGLNRGLPKLG IGRSRGGIGGKDGNEGGKSIESKQCGTLDF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF004976
8 321 314 2.5E-119
IPR035107
Hamap
MF_03053
11 324 314 50.274
IPR000541
Gene3D
G3DSA:3.40.50.620
12 319 308 1.5E-82
IPR014729
PANTHER
PTHR11807:SF12
12 325 314 7.7E-172
IPR000541
PANTHER
PTHR11807
12 325 314 7.7E-172 –
SUPERFAMILY
SSF52402
46 278 233 1.48E-48 –
CDD
cd01993
60 247 188 2.12611E-88 –
Pfam
PF01171
61 253 193 3.9E-14
IPR011063
Pfam
PF16503
289 319 31 2.1E-18
IPR032442
MobiDBLite
mobidb-lite
330 350 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000049
Molecular function TRNA binding Interacting selectively and non-covalently with transfer RNA.
Subterm of
GO:0002098
Biological process TRNA wobble uridine modification The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified.
Subterm of
GO:0008033
Biological process TRNA processing The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
Subterm of
GO:0034227
Biological process TRNA thio-modification The addition a sulfur atom to a nucleotide in a tRNA molecule.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0556900.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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