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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0565200 |
| Transcript ID | LotjaGi1g1v0565200.5 |
| Related isoforms 7 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Bifunctional dihydrofolate reductase-thymidylate synthase; TAIR: AT2G16370.1 thymidylate synthase 1; Swiss-Prot: sp|P51820|DRTS_SOYBN Bifunctional dihydrofolate reductase-thymidylate synthase; TrEMBL-Plants: tr|I1K753|I1K753_SOYBN Bifunctional dihydrofolate reductase-thymidylate synthase; Found in the gene: LotjaGi1g1v0565200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:109857301..109858823) extracted from Lotus japonicus Gifu genome v1.2.
ATGACTGGTGATTCTTTTGTAGTCTCTAGTGGAAATGGCAATGGCAGTATCAACCCACTACCTAATCTGCAGAGGACTTA CCAAGTGGTGGTTGCTGCCACCAAAGATATGGGCATTGGTAAGGATGGAAAATTACCCTGGAGATTATTTACCGATCTCA AGTTTTTTAAGGAGATCACTACCGCAACATCTGATCCCGGGAAGAAGAATGCCATAGTAATGGGAAGAAAAACATGGGAG AGTATCCCTCTTAAGTATAGGCCTCTACCCGGTCGGCTTAATGTTGTTCTCACACGCTCAGGTAGCTTTGATATTGGAAC GGCAGAGAATGTTGTGATTTGTGGAAGTATCTCTTCTGCATTAGAACTTTTAGCTGCTTCTCCTTACTGTCTGTCAATTG AGAAAGTATTTGTCATAGGAGGCGGTCAGATATTTAGGTATATGTTCTTCTCCCCCTTCTTGTGCTCCATCCTTTTCTGC TATAGACTTATGGCTGATAATTTCAATGTACAGAGAAGTTCTTAATGCACCTGGATGTGAAGCTATCCACTTCACTGAAA TTCATGCAAGCATTGAGTGTGACACTTTTATGCCTCCAGTTGATTCCACTAAATATCAGTTATGGTACTCATCCTTTCCT AAGGTGGAAAACGACATCCGCTATTCTTTCGCCACGTATGTGCGTGTTCAGAGTTCTGCAGCAGAGTCCCTGAGTCAGAA TACTGATCCACTTTTTGATAATAATTCAGATTCCCTAAAGTTTGAGGTTCAAAACTTTGACTTTCTTCCTGAAATGATTC TTCAGAGACATGAGGAATACATGTATCTTAGGCTGATTCAAGAAATCATATCTGAAGGTACAACTAAGGATGATAGGACA GGGACTGGTACCTTGTCAAAATTTGGTTGCCAGGTAATGTGTCAATTGATATATTGAGTTTATCATAATTTATATGCTGA CTTTATCTCTATAATTCTACAGATGAGGTTCAATCTCCGCAGAAGCTTTCCTCTTCTAACAACCAAGGCATGCAATTGTG GTTATGGTTTAGGATATGTTTTTAATCTACTGTGCAAAACATTATTTTCTTTTTAATTACTTTGGATGTTTACGGTTAAA GAGGAATGTCTATTTGTACATTTTGATAGAGAAGCTGACATGATTTCTTCATTGGGTTTCTAGAAAGTATTTTGGCGAGG GGTTGTTGAAGAACTTCTTTGGTTTATCAGTGGCTCAACAAATGCCAAGGTAATTATAACTTTTGACAATCTTTTCTACA CACATGAATATGGTATGTACTAGTCCCTTAGGTTTGGTTATGTGGTGTTGAACAGTAAAATCTGGTTGTAATTCTTTCTA GCTCCTTCGTTTTTGTGCTACTTTGTTGGTATAGTAGATAAGGACATACGGTTATTATGACCTATATTCAGAAAGCATTC TATATTGACAGGTGTTGCAGGAAAAAGGCATTCATATATGGGATGGCAATGCATCCAGAGAATACCTGGATAGGCAAGCA TGA
CDS sequence (LotjaGi1g1v0565200.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTGGTGATTCTTTTGTAGTCTCTAGTGGAAATGGCAATGGCAGTATCAACCCACTACCTAATCTGCAGAGGACTTA CCAAGTGGTGGTTGCTGCCACCAAAGATATGGGCATTGGTAAGGATGGAAAATTACCCTGGAGATTATTTACCGATCTCA AGTTTTTTAAGGAGATCACTACCGCAACATCTGATCCCGGGAAGAAGAATGCCATAGTAATGGGAAGAAAAACATGGGAG AGTATCCCTCTTAAGTATAGGCCTCTACCCGGTCGGCTTAATGTTGTTCTCACACGCTCAGGTAGCTTTGATATTGGAAC GGCAGAGAATGTTGTGATTTGTGGAAGTATCTCTTCTGCATTAGAACTTTTAGCTGCTTCTCCTTACTGTCTGTCAATTG AGAAAGTATTTGTCATAGGAGGCGGTCAGATATTTAGAGAAGTTCTTAATGCACCTGGATGTGAAGCTATCCACTTCACT GAAATTCATGCAAGCATTGAGTGTGACACTTTTATGCCTCCAGTTGATTCCACTAAATATCAGTTATGGTACTCATCCTT TCCTAAGGTGGAAAACGACATCCGCTATTCTTTCGCCACGTATGTGCGTGTTCAGAGTTCTGCAGCAGAGTCCCTGAGTC AGAATACTGATCCACTTTTTGATAATAATTCAGATTCCCTAAAGTTTGAGGTTCAAAACTTTGACTTTCTTCCTGAAATG ATTCTTCAGAGACATGAGGAATACATGTATCTTAGGCTGATTCAAGAAATCATATCTGAAGGTACAACTAAGGATGATAG GACAGGGACTGGTACCTTGTCAAAATTTGGTTGCCAGATGAGGTTCAATCTCCGCAGAAGCTTTCCTCTTCTAACAACCA AGAAAGTATTTTGGCGAGGGGTTGTTGAAGAACTTCTTTGGTTTATCAGTGGCTCAACAAATGCCAAGGTGTTGCAGGAA AAAGGCATTCATATATGGGATGGCAATGCATCCAGAGAATACCTGGATAGGCAAGCATGA
Protein sequence (LotjaGi1g1v0565200.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTGDSFVVSSGNGNGSINPLPNLQRTYQVVVAATKDMGIGKDGKLPWRLFTDLKFFKEITTATSDPGKKNAIVMGRKTWE SIPLKYRPLPGRLNVVLTRSGSFDIGTAENVVICGSISSALELLAASPYCLSIEKVFVIGGGQIFREVLNAPGCEAIHFT EIHASIECDTFMPPVDSTKYQLWYSSFPKVENDIRYSFATYVRVQSSAAESLSQNTDPLFDNNSDSLKFEVQNFDFLPEM ILQRHEEYMYLRLIQEIISEGTTKDDRTGTGTLSKFGCQMRFNLRRSFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQE KGIHIWDGNASREYLDRQA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 14 | 204 | 191 | 6.5E-60 | ||
| SUPERFAMILY | 18 | 203 | 186 | 6.54E-59 | ||
| PANTHER | 23 | 337 | 315 | 1.0E-160 | – | |
| PANTHER | 23 | 337 | 315 | 1.0E-160 | – | |
| ProSiteProfiles | 26 | 203 | 178 | 51.57 | ||
| Pfam | 28 | 203 | 176 | 8.4E-40 | ||
| CDD | 30 | 202 | 173 | 1.9211E-62 | ||
| PRINTS | 38 | 48 | 11 | 4.1E-18 | – | |
| ProSitePatterns | 38 | 60 | 23 | - | ||
| PRINTS | 52 | 60 | 9 | 4.1E-18 | – | |
| PRINTS | 72 | 83 | 12 | 4.1E-18 | – | |
| PRINTS | 135 | 149 | 15 | 4.1E-18 | – | |
| SUPERFAMILY | 235 | 337 | 103 | 4.58E-41 | ||
| Gene3D | 236 | 339 | 104 | 7.9E-40 | ||
| Pfam | 249 | 330 | 82 | 2.9E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Dihydrofolate reductase activity | Catalysis of the reaction: 5,6,7,8-tetrahydrofolate + NADP+ = 7,8-dihydrofolate + NADPH + H+. | ||
| Biological process | Tetrahydrofolate biosynthetic process | The chemical reactions and pathways resulting in the formation of tetrahydrofolate, 5,6,7,8-tetrahydrofolic acid, a folate derivative bearing additional hydrogens on the pterin group. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi1g1v0565200.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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