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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0575700 |
| Transcript ID | LotjaGi1g1v0575700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone H2A; TAIR: AT5G02560.1 histone H2A 12; Swiss-Prot: sp|A2XZN0|H2A6_ORYSI Probable histone H2A.6; TrEMBL-Plants: tr|I1H6W0|I1H6W0_BRADI Histone H2A; Found in the gene: LotjaGi1g1v0575700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:111117683..111118435) extracted from Lotus japonicus Gifu genome v1.2.
CTTCCCCAGCGGCATACTACAAACACTTCATCCCGCACAAGTCACGATAAGAATTTAGTGTCACCACTAGAAAGATGAGG AAAGGTGCTAAAGAGAGAAAGAAAGGAGGCCTAAAGAAGAAGCCAGTTTCAAGGTCAGAGAAGGCTGGTCTCCAATTCCC CGTTGGGAGGATTGGACGTTACCTTAAGAAAGGAAGGTACGCTAAGCGTGTTGGTACTGGTGCTCCTGTTTACATGGCTG CTGTTCTCGAATATCTTACTGCTGAGGTAACTTTTCATTTCCCTTTCAATTATGTTTTAAATTTTTGTGATTATGCAATT GATTCCCAACCCTATTGGGTTCTTGCGTATGTGGTTGCTCAGGTGCTTGAGTTGTCTGGGAATGCAGCTCTTGACAATAA GAAGAAACGAATTAGTCCGAGACACATTTTGCTGGCAATCAGGAACGATGGAGAGCTTGGGAAATTGCTGGATGGGGTCA CCATTGCTCATGGTGGTGTTGTCCCTAAAATCAACCCAGTGTTGTTGTTTGAGAAGAAAGCTGATAAGGCTCCCAAAATA CCCAAGTCTCCCAAGGAGCCAAATTCCCCCAAGGAGTTCAATTTTACCTCTAAGGATGTTGAGCCCTAAAAATAATTGAT TTTTGAAATCTTTGTCAATCTTAAGTTTTTGTTCTTAAATCGTATTCAGATCAGAGATCTAATTTTGTGGCTTTAATGCA TCTTGTTTAATAAAGTTGATTTGATCTTGATTA
CDS sequence (LotjaGi1g1v0575700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGAAAGGTGCTAAAGAGAGAAAGAAAGGAGGCCTAAAGAAGAAGCCAGTTTCAAGGTCAGAGAAGGCTGGTCTCCA ATTCCCCGTTGGGAGGATTGGACGTTACCTTAAGAAAGGAAGGTACGCTAAGCGTGTTGGTACTGGTGCTCCTGTTTACA TGGCTGCTGTTCTCGAATATCTTACTGCTGAGGTGCTTGAGTTGTCTGGGAATGCAGCTCTTGACAATAAGAAGAAACGA ATTAGTCCGAGACACATTTTGCTGGCAATCAGGAACGATGGAGAGCTTGGGAAATTGCTGGATGGGGTCACCATTGCTCA TGGTGGTGTTGTCCCTAAAATCAACCCAGTGTTGTTGTTTGAGAAGAAAGCTGATAAGGCTCCCAAAATACCCAAGTCTC CCAAGGAGCCAAATTCCCCCAAGGAGTTCAATTTTACCTCTAAGGATGTTGAGCCCTAA
Protein sequence (LotjaGi1g1v0575700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRKGAKERKKGGLKKKPVSRSEKAGLQFPVGRIGRYLKKGRYAKRVGTGAPVYMAAVLEYLTAEVLELSGNAALDNKKKR ISPRHILLAIRNDGELGKLLDGVTIAHGGVVPKINPVLLFEKKADKAPKIPKSPKEPNSPKEFNFTSKDVEP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| MobiDBLite | 1 | 16 | 16 | - | – | |
| Gene3D | 3 | 130 | 128 | 6.2E-58 | ||
| SMART | 5 | 125 | 121 | 2.4E-72 | ||
| PANTHER | 7 | 135 | 129 | 6.8E-70 | – | |
| PANTHER | 7 | 135 | 129 | 6.8E-70 | – | |
| CDD | 8 | 122 | 115 | 1.45122E-64 | ||
| Pfam | 14 | 91 | 78 | 4.3E-14 | ||
| PRINTS | 16 | 38 | 23 | 4.6E-46 | ||
| SUPERFAMILY | 19 | 119 | 101 | 5.94E-41 | ||
| ProSitePatterns | 24 | 30 | 7 | - | ||
| PRINTS | 45 | 60 | 16 | 4.6E-46 | ||
| PRINTS | 60 | 73 | 14 | 4.6E-46 | ||
| PRINTS | 74 | 88 | 15 | 4.6E-46 | ||
| Pfam | 95 | 126 | 32 | 2.3E-13 | ||
| PRINTS | 102 | 120 | 19 | 4.6E-46 | ||
| MobiDBLite | 126 | 152 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleosome | A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi1g1v0575700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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