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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0576100 |
| Transcript ID | LotjaGi1g1v0576100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rhomboid-like protein; TAIR: AT2G29050.1 RHOMBOID-like 1; Swiss-Prot: sp|Q0WQX7|RBL1_ARATH RHOMBOID-like protein 1; TrEMBL-Plants: tr|K7M3E7|K7M3E7_SOYBN Rhomboid-like protein; Found in the gene: LotjaGi1g1v0576100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:111321243..111325351) extracted from Lotus japonicus Gifu genome v1.2.
CAAAAAACTCCACAAATTGTTTTTTCAGTTTTTTGTTTTTGTTTTCCTTGGGAAGTAACAAAAGCATAATACAGCTGGGG AAGGGAAAAAACGCGTAAAATAAAATAGCTGGAAGATTTCAATTTTCAATGCAAACAGCAACACAATATATTTGTAGTGT ACCTATTCAATAAAAAAATGAATCTGTAAATTTGAATCTCAAGTCAGAAAAAACAAAACATTAGAAGATTTGAGGAAGAA ATAAACCAAAGTAGCAGTTACAGACAGATTGGTAGCAAGCAAGTACCAAACAAAAACAACAACCAAATTCTTAACTTGGC TTAGCCTTGTTGGATTCTGGTAAACTCTGAAACCCTCACCCCAAAAACCTACACATCATTTCAAACCAAACCCAACCAAA CCAAACCAAATTGTTCTTATTTTCATCAATAATTATAGTAATTGCAATAATGTGTTAGAAACTTGAAATCTTTGGCTGAA AGGGAACCAGGGAGGATCATGGGGAGGAGGGACCCATCTGGTGCTACCAGTCTTGAGGTCAAGGTTCATCCACGCCATGG GGACACCGCCGCCGCTCACCCCGGACGGGGCCCTCCGCCGCCCGTTCCCGATCGCGACTTCAGCCTCTTCAAGCGGTGGT TCCCGTGGCTTGTTCCGACCTTTGTGGTGGCCAACATTGCCGTGTTTCTTGTCACCATGTATGTGAATGATTGCCCTAAG CATTCCCTGCGTGATTCCTGCGTTGCTTCGTTTCTGGGTAGATTCTCCTTTCAGCCCCTCAAGGAGAATCCCCTCTTTGG TCCTTCTTCCTCCACGTGAGTTCTTTTCTTTCTTTCCATTCCTTCATCAATGTCATGGATTCTTGGTTTTTCTTTCTTTT TTTGAACATCATTTCTTTGAAATTTCTGTGATGGGTCATCATAGCTTTGATTAATGGATGTGTACTTGTGTTGTGCCTAT CTTGCTAAGTTGTAGGTAGTTGTGTTTTTTATGGGGTTTCATGATATGTAATTTTTGTTTGTTCAGATTAGAGAAGATGG GTGCTATGGAAGTTGATAAAGTGGTTCATAGACACCAGGTTTGGCGTCTCTTCTCTTGCATGTGGTTGCACGGTGGGGTC GTCCATGTGCTTGCCAACATGTTGAGTCTTGTTTTTATCGGAATTCGGCTTGAGCAAGAATTTGGATTTGGTATGGTCCT GGTAATTATCCTTGCATTGTTCAAGTTTATCACGAGAAATTGTCATGACCATTGAGGGAAACTCTAAACTGATTTGAGCA GCTAAATGAATAAAAAACATTTTTTCACTTATCAGTTTCAGATTGTAATATCATCTACTTTGGTTGTTTCTTTGCAGTTC GAATTGGATTTGTGTATGTGATATCTGGTTTTGGAGGGAGTTTGTTGTCTGCTCTATTCATACAATCAGGCATCTCGGTT GGTGCTTCCGGTGCGTTATTTGGCTTACTAGGAGGGATGCTGTCAGAGCTATTAATAAATTGGACAATATATGCCAATAA GGTGAACTAAACAATAATTTTGTTAAAATTCGATGGTGCTTCCTAGAAAATAATCCACTCTGCATTTGTGCCACATGCAG CTATTTTATTTATTTGCGTTTTATTTTTTGTGTTGTTTTGCAGTTCGCAGCGTTGTTGACTCTTACGGTCATTATTGTAA TCAATTTAGCTGTTGGGATCCTTCCACATGTGGACAATTTTGCACACATTGGAGGATTTGTCTCCGGCTTTCTTCTTGGG TTTGTCTTTCTGATTCGTCCACAGTTTAAATGGATTAGCCAAAGAAATCATAGTGCTGGGTATGCTGCACCTTCTGTGAA ACATAAGCACAAACCTTATCAGTATGCACTGTGGATCATCTCTTTCACATTACTGACTGCTGGGTAAGTCCTCATTCAAT TTTTTCTTTCTTTTTTAAAATTTACCTTTTACTTTGTTAGCGTATCTAATTGCCTTGATATCTATGAGAAGGTCTTTACA CAAGATTAGGACTTCAATACTTGTTTGGCAAAAACTTCGCTTGTTTAAGATTGAAGTTATTTTCGGGAAAGGGTTGTTAT TCTAGCTTCTATTTGAGTGTCTGCTCTGGGTTTTGCATGGGGGTTCTTTGTCAGACATGTATATTGTGGATGGCTCTCTT TCTGATTTTGTTTTTCCTGGTTTTCTCTTCTCTATCATTTTAGTATGGTTCCTGATCCTCCTTGCTCTGTCCTTCCCTTC TGTCTTAATTATATCTAGCTATGGGTGGGGATCCACATCCACTTGCATTAAGAGTAACCCTGACTGGATTTACTCCGCCT AATAATTGTGTATAGAACATGAATTCAGCAAACCCAACCGTAAGTGGATCCCCATGTGCATGCTTGCATGCTATGCGTAT CAAGTGAGAGAAGTTGAACATGAGAATAATTGCTTTTGACTATATAATTATAGTGAACGATCAACATTATAGTTAAGTAA AACAATTGAAACTAGAAAATGTTGAGTATCCATATGATAGGAGCTATATTTACTGTTGAATTAAGAGGAACATTCCAGAT AACAGAGCTCTAGTTACAGAGGAAAAATGCAGCAAATATAGAAATTAGAAAGGAATAAATGGCCTCTGAAAAGGAATAAC TTGTCTGCACTGGCAGAAGCCACCCACAACTATGCCAATAATTTCCTTCTCCAACACCTCAATCCATTCCCTCATATTCA TGTCTCCCTATGCTCCATTATATTGTATTCCTATCTCCTACGGCCACATCAGGTTTCTGAGGATTTACAATTACAGTTTT CTCTCCACTAGTAACAAACATCCCTCCACCATTTCCCACATTATTTTCTGTCCTACCTTCACTTTTATCCCTTCTGTAGT ATACTCTCATTGGAGGCCCATGATGAGAGGCCATCACCATATATGGTTGTAAGTTCAGGATTAATTGTTTTCACTAGAAC GGTTCTCTTAGATATGTCTCCTATAAAGAACTCTTTTTTGGAGAGGGGGGAATTAAACTTGCAGTCTCTCTTCAATAGTT TCTTTGGGAGTCATTTTTACATATTGCTTCTGTTTCTCATCAACAGCGAGATTTACTAGTCCATACTACTACAATATATT GATTAAATGTTATGGCGTCTGATATACTATTTATTTTGATGTGATGTTTATTTTATTATTATTTTATCTGTGTTGGTGCT TTGTGCTCAAATCTGAAAGTTGAATTGTTTTAACAGATTGATTACTGGGCTGGTTTTGCTCCTTCGAGGTGTTGACATGA ATGATCGTTGCTCCTGGTGTCATTATTTAAGTTGTGTCCCTACCTCAAAATGGAGCTGCCAAAATCAAAATATTTACTGT GAGGTGAGTGCTCATTTCTTGATTACTTTCCATCCATGCAGCTTCCAAGGAAAATGTATGATTTTACCGCCAAATCTATT GATGATTTAATGCCTGATAACTCCAAACATTAAAGGAGATTGTTGTACAATGTACTTCTTTTATCTGAATTGGTTTTGAT ACTAAATATTCTCTGCTGTGACGCTGCAGACAACACAAATAGGAAACCAACTCAACATAACATGCTTGAGCAATGGGAAA AGTGACATGTTTCCTCTGCCTAGCTCTTCTGAGGCTCAACAACTATGTTCTCAACTTTGCAGTTGATAGACACACATGAA CCACTTCGTGGTGCGATGTCAGTCAACAACTTGTGCATATGATTCATTCTTGGTAGTGCAGAGAAATTCTTTCTTCTGGA TTGGTGATGGTTGATATGTCCGCCATCGTGAGCATATTCTTGTCAGCGCTATTTCCATCTCTTAGTTATGAATTACTGTG TGCTATTATTCTTTTGTAGCAGGAGAGGGGAGGAGTGGAAGTTGTATTTGGTTTAAAAAGAAAATTAACTCTTAAAGATT GTAAATGCTGTCAAATGGATGGATCCAAAAACAAATTGCATGCTTTAGATTATGAGCTTACAGGTAAATTCTTTTTGTTT AAACAGTATCTCACATGAAAATTTTAGTTTTTGCTAGTCATTCAAAATCTTGATATGTGCATCACTATGATGTTCCTATC TAGGCTTCATCTCTAAATGTGACATCGGG
CDS sequence (LotjaGi1g1v0576100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAGGAGGGACCCATCTGGTGCTACCAGTCTTGAGGTCAAGGTTCATCCACGCCATGGGGACACCGCCGCCGCTCA CCCCGGACGGGGCCCTCCGCCGCCCGTTCCCGATCGCGACTTCAGCCTCTTCAAGCGGTGGTTCCCGTGGCTTGTTCCGA CCTTTGTGGTGGCCAACATTGCCGTGTTTCTTGTCACCATGTATGTGAATGATTGCCCTAAGCATTCCCTGCGTGATTCC TGCGTTGCTTCGTTTCTGGGTAGATTCTCCTTTCAGCCCCTCAAGGAGAATCCCCTCTTTGGTCCTTCTTCCTCCACATT AGAGAAGATGGGTGCTATGGAAGTTGATAAAGTGGTTCATAGACACCAGGTTTGGCGTCTCTTCTCTTGCATGTGGTTGC ACGGTGGGGTCGTCCATGTGCTTGCCAACATGTTGAGTCTTGTTTTTATCGGAATTCGGCTTGAGCAAGAATTTGGATTT GTTCGAATTGGATTTGTGTATGTGATATCTGGTTTTGGAGGGAGTTTGTTGTCTGCTCTATTCATACAATCAGGCATCTC GGTTGGTGCTTCCGGTGCGTTATTTGGCTTACTAGGAGGGATGCTGTCAGAGCTATTAATAAATTGGACAATATATGCCA ATAAGTTCGCAGCGTTGTTGACTCTTACGGTCATTATTGTAATCAATTTAGCTGTTGGGATCCTTCCACATGTGGACAAT TTTGCACACATTGGAGGATTTGTCTCCGGCTTTCTTCTTGGGTTTGTCTTTCTGATTCGTCCACAGTTTAAATGGATTAG CCAAAGAAATCATAGTGCTGGGTATGCTGCACCTTCTGTGAAACATAAGCACAAACCTTATCAGTATGCACTGTGGATCA TCTCTTTCACATTACTGACTGCTGGATTGATTACTGGGCTGGTTTTGCTCCTTCGAGGTGTTGACATGAATGATCGTTGC TCCTGGTGTCATTATTTAAGTTGTGTCCCTACCTCAAAATGGAGCTGCCAAAATCAAAATATTTACTGTGAGACAACACA AATAGGAAACCAACTCAACATAACATGCTTGAGCAATGGGAAAAGTGACATGTTTCCTCTGCCTAGCTCTTCTGAGGCTC AACAACTATGTTCTCAACTTTGCAGTTGA
Protein sequence (LotjaGi1g1v0576100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRRDPSGATSLEVKVHPRHGDTAAAHPGRGPPPPVPDRDFSLFKRWFPWLVPTFVVANIAVFLVTMYVNDCPKHSLRDS CVASFLGRFSFQPLKENPLFGPSSSTLEKMGAMEVDKVVHRHQVWRLFSCMWLHGGVVHVLANMLSLVFIGIRLEQEFGF VRIGFVYVISGFGGSLLSALFIQSGISVGASGALFGLLGGMLSELLINWTIYANKFAALLTLTVIIVINLAVGILPHVDN FAHIGGFVSGFLLGFVFLIRPQFKWISQRNHSAGYAAPSVKHKHKPYQYALWIISFTLLTAGLITGLVLLLRGVDMNDRC SWCHYLSCVPTSKWSCQNQNIYCETTQIGNQLNITCLSNGKSDMFPLPSSSEAQQLCSQLCS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 46 | 46 | - | – | |
| MobiDBLite | 1 | 35 | 35 | - | – | |
| PANTHER | 38 | 371 | 334 | 1.5E-207 | – | |
| PANTHER | 38 | 371 | 334 | 1.5E-207 | ||
| SUPERFAMILY | 46 | 263 | 218 | 7.32E-43 | – | |
| Phobius | 47 | 69 | 23 | - | – | |
| TMHMM | 47 | 69 | 23 | - | – | |
| Phobius | 70 | 130 | 61 | - | – | |
| Gene3D | 93 | 263 | 171 | 8.4E-35 | ||
| Pfam | 119 | 260 | 142 | 1.6E-39 | ||
| TMHMM | 131 | 153 | 23 | - | – | |
| Phobius | 131 | 152 | 22 | - | – | |
| Phobius | 153 | 163 | 11 | - | – | |
| TMHMM | 160 | 182 | 23 | - | – | |
| Phobius | 164 | 182 | 19 | - | – | |
| Phobius | 183 | 187 | 5 | - | – | |
| TMHMM | 187 | 209 | 23 | - | – | |
| Phobius | 188 | 209 | 22 | - | – | |
| Phobius | 210 | 215 | 6 | - | – | |
| Phobius | 216 | 235 | 20 | - | – | |
| TMHMM | 216 | 238 | 23 | - | – | |
| Phobius | 236 | 240 | 5 | - | – | |
| Phobius | 241 | 259 | 19 | - | – | |
| TMHMM | 242 | 259 | 18 | - | – | |
| Phobius | 260 | 288 | 29 | - | – | |
| TMHMM | 289 | 311 | 23 | - | – | |
| Phobius | 289 | 311 | 23 | - | – | |
| Phobius | 312 | 382 | 71 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0576100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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