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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0585300 |
| Transcript ID | LotjaGi1g1v0585300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vesicle-associated membrane protein, putative; TAIR: AT1G04760.1 vesicle-associated membrane protein 726; Swiss-Prot: sp|Q9MAS5|VA726_ARATH Putative vesicle-associated membrane protein 726; TrEMBL-Plants: tr|A0A067J992|A0A067J992_JATCU Uncharacterized protein; Found in the gene: LotjaGi1g1v0585300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:112465849..112468570) extracted from Lotus japonicus Gifu genome v1.2.
GTGGCATTACCCTACCCGTTCCTTCCCTTTCACGCTTGCTTCGCATCTAAGCCAACAGAAACCAACACTGTTCTCTTCTC TGTACTTCCTTCTTTTCTCTGTTGTTACTGCAAACACAAGAACAAAGCCACTTCCTATTTCTCTCTCTAGAACTACAACA GTCGCTTCTTTCTCTCTCTATAACCGACAACGCCATTTTCTTCTTCTTCTTCTCTGCATCGGCGATTGTTGGTGGTTGTT GCGGTTGTGGTTCCGGCAATGGGACAGCAATCGTTGATCTACAGCTTCGTCGCTCGCGGCACCGTGATCCTCGCTGAGTA CACCGAGTTCACCGGAAACTTCACCGGCGTGGCGGCGCAGTGCCTTCAGAAACTCCCTTCCTCCAACAATAAGTTCACGT ACAACTGCGACGGCCACACATTCAACTACCTTGTGGATAATGGATTCAGTAATCATCTCTCTCTATTCTTCTCGTTTCGC TGATCTGCGTGCATTTTCTGATTTTCTTGTATCTTCGATTTGGATTTTCATTTTGTTGTTACTCTTTGATCTGCATGCAC AAAAATTCACAAAAAAAAAAAAGGAAAATATAAGAAATTGCCTTTTCCCTTTGGTGTTCAGTGTGCTTGATTTGATTTCG TTTACGCTCGAGATCGATTCTTATAATGGTTTGATTGTTGGAATGTGACTAAAAATGGCATAAAAGGAACCAATATTTCT TTGTTTTTTGTACATAAAATGGTAAAATGGAGAGAAAGCAGGTCCAAACTATCGAGCACAGGGCGCTAGTGGCACGCTGG GGAGGCCAGCAGAGGCCCAATATCCATATCTCGCAGTTTGTTGCGTTGTATCTGATGAAGTTCTTCCTTTAATCCTTTCT TTTGTTATTGGCTTATCATCATACAGTAACATTTGGTTTTTTGGTATACACATACACATAATATGTTAGTAAAAGGGAGA TTGAGGGAAATTTTTCCTTAATAGCTATTAGCATTGAAAAGGTAGATTAAGGGAAACTTATAAATTTTGCAAGGGTTGGA ATTGAAATCATTTGGTTATTGAGAAAATGTACTGTGTGTAATTAAAAATGGTCAATACTGGCTTTATTGTTAATAACTTT ATTGTGTTTTAATATTTTATTGTTTTGTTTTCCTTTCTCTACTGAAGTTACAATCATCATTAGTTGGAAATAACTTAAAG CCTGTTGAATGTTAGCTTACTGTGTCGTTGCGATTGAGTCTGCTGGACGACAGATTCCAATTGCATTCCTTGAACGTATT AAGGAGGAGTTCACCAAGAAATATGCTGGAGGAAAAGCAGCAAATGCTGCTGCTCAGAGCCTGAAAAGAGAGTTTGGGTA TTTGTTTATGATAAAAGTTTTTGTTGTTAATTTGCTATAATGAGTCCATTGTTCTGAAATGTTTGCTGTTCCATCATTAG ACCTAAGTTGAAGGAGCAGATGCAGTACTGTATTGATCACCCAGAGGAGATTAGCAAGCTTTCTAAAGTGAAAGCTCAGG TTTCTGAAGTCAAAGGAGTTATGATGGAAAATATTGAGAAGGTAAAGTACTAATTATCTTCTCTCCCCTGTTTTTAGGAA ACTATGCAAATATGTTTTTTCTTTTTTGGGCTGCAAGTGGGTTGAAAATGTTTCTTGAAGCTTAACTTTGCCATTAACCC ATTTTTCATGTGGGCATAGTTGGAGGAGATCATATTTGAAGTTGTTTAACCTTATGAATTTGACTCATAGGTTGCAGTAA TTTTATATCCCATTTGGCAGGTTCTTGACCGTGGGGAGAAAATTGAGCTTTTGGTGGATAAAACAGATAACCTTCGCTCT CAGGTATGAAACTTTTAGCAATCTTAAAAAAATTACCCAAGCATAGAAATAAATTGTCGCATGCTTCCAAAATCTTCGTT TTTTCGACTTTTTTAGTGCTTTTAGTTGTCAAAAGTTTAGAAGTAATTGCCGTTAACACATCTACAAACAAACACTAGAA TGCTAAATTGATAATACCCCATCTATATTGTGAGTAAACTTCAAACATGATAGATAGTCTTGGAGTGAGTTAGATTGATG CAACAAACAACACAGTACATGTATATAATCATTAAGCCGCTAGAAGTTTTTTGTCCCATATTTATTTTATTATTAGCTAA AAATGAGATATTTTATTATTTTTAGTGAAAAGATTTTTGTGACTCCTAAATTCATTTGATATTACAGGCACAAGATTTCA GGCAACAGGGAACCAAGATTAGGAGAAAGATGTGGTTCCAAAATATGAAGATCAAGTTAATTGTTGCGGGTATCATAGTT CTCTTGATTCTCATTCTCATTATCTCCATTTGTGGTAGCTTAAATTGTAGTAAGAAATGAGTCTTCTTGTGTGGTGGGTT TAACTGGGATACATTTGTCTCCTCACTGGATAAGAATGTCGCTAGCGGATTGCCATTGCGTCTACTTTCGACCTAGTGCT GCTTAGTTTTTGGATTTTACATTCTTGCTACTACGGTGATTAATATTGTATGGGACTGCTTGTATAGTATGTAATGCTGT AGTGTTCCTTAACTTGTTTCCCTTAGTATGCTACATATTGAGAAACTAATCATTGCCTAGTCGAGATTCCTATTACCTGT TTTTTTTTTCCTGATCGTTTCTTTCTCTATATATGACTTGAGAATATAATATTTCCATTTTTTGCACGCACTTTGAAAAT AA
CDS sequence (LotjaGi1g1v0585300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGACAGCAATCGTTGATCTACAGCTTCGTCGCTCGCGGCACCGTGATCCTCGCTGAGTACACCGAGTTCACCGGAAA CTTCACCGGCGTGGCGGCGCAGTGCCTTCAGAAACTCCCTTCCTCCAACAATAAGTTCACGTACAACTGCGACGGCCACA CATTCAACTACCTTGTGGATAATGGATTCACTTACTGTGTCGTTGCGATTGAGTCTGCTGGACGACAGATTCCAATTGCA TTCCTTGAACGTATTAAGGAGGAGTTCACCAAGAAATATGCTGGAGGAAAAGCAGCAAATGCTGCTGCTCAGAGCCTGAA AAGAGAGTTTGGACCTAAGTTGAAGGAGCAGATGCAGTACTGTATTGATCACCCAGAGGAGATTAGCAAGCTTTCTAAAG TGAAAGCTCAGGTTTCTGAAGTCAAAGGAGTTATGATGGAAAATATTGAGAAGGTTCTTGACCGTGGGGAGAAAATTGAG CTTTTGGTGGATAAAACAGATAACCTTCGCTCTCAGGCACAAGATTTCAGGCAACAGGGAACCAAGATTAGGAGAAAGAT GTGGTTCCAAAATATGAAGATCAAGTTAATTGTTGCGGGTATCATAGTTCTCTTGATTCTCATTCTCATTATCTCCATTT GTGGTAGCTTAAATTGTAGTAAGAAATGA
Protein sequence (LotjaGi1g1v0585300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGQQSLIYSFVARGTVILAEYTEFTGNFTGVAAQCLQKLPSSNNKFTYNCDGHTFNYLVDNGFTYCVVAIESAGRQIPIA FLERIKEEFTKKYAGGKAANAAAQSLKREFGPKLKEQMQYCIDHPEEISKLSKVKAQVSEVKGVMMENIEKVLDRGEKIE LLVDKTDNLRSQAQDFRQQGTKIRRKMWFQNMKIKLIVAGIIVLLILILIISICGSLNCSKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 193 | 193 | - | – | |
| PANTHER | 1 | 219 | 219 | 1.9E-135 | – | |
| PANTHER | 1 | 219 | 219 | 1.9E-135 | – | |
| Gene3D | 2 | 128 | 127 | 3.8E-45 | – | |
| SUPERFAMILY | 6 | 121 | 116 | 1.89E-27 | ||
| CDD | 7 | 121 | 115 | 6.98958E-30 | – | |
| ProSiteProfiles | 10 | 114 | 105 | 27.066 | ||
| SMART | 31 | 113 | 83 | 2.5E-25 | ||
| Pfam | 32 | 111 | 80 | 7.0E-23 | ||
| SUPERFAMILY | 125 | 192 | 68 | 4.19E-24 | – | |
| Gene3D | 129 | 214 | 86 | 3.6E-31 | – | |
| Pfam | 129 | 215 | 87 | 2.7E-34 | ||
| ProSiteProfiles | 130 | 190 | 61 | 19.647 | ||
| CDD | 130 | 188 | 59 | 1.94728E-27 | – | |
| PRINTS | 135 | 154 | 20 | 8.0E-22 | ||
| ProSitePatterns | 148 | 167 | 20 | - | ||
| PRINTS | 155 | 174 | 20 | 8.0E-22 | ||
| Coils | 159 | 179 | 21 | - | – | |
| PRINTS | 191 | 210 | 20 | 8.0E-22 | ||
| Phobius | 194 | 213 | 20 | - | – | |
| TMHMM | 196 | 218 | 23 | - | – | |
| Phobius | 214 | 222 | 9 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi1g1v0585300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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