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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0585500 |
| Transcript ID | LotjaGi1g1v0585500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vesicle-associated membrane protein, putative; TAIR: AT1G04760.1 vesicle-associated membrane protein 726; Swiss-Prot: sp|Q9MAS5|VA726_ARATH Putative vesicle-associated membrane protein 726; TrEMBL-Plants: tr|A0A151RCJ5|A0A151RCJ5_CAJCA Putative vesicle-associated membrane protein 726 family; Found in the gene: LotjaGi1g1v0585500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:112495895..112499545) extracted from Lotus japonicus Gifu genome v1.2.
CCTAGCTCTCATTCTAGAAGTGGTATGACGACTCTTCTTCTTACCCGTCTGCTCTGACCTCGTCACTTGCAAGATTTTTC CAAGTTTGAAGTCCCACACGAAGCAAATCGATAAGCATGTCAAAATCAAACACGTTTTTGCTTCGTTCCCTCCCTCATCT GAAAACTTTTTGCTCAACTATCAATCCCTTCTCTGCAAACTCTCTCATTTTTTCCCTCTCTCTGTCTCTGTTTCCTTTCT TCTCACTCTCCCACCGAAATCTGTGTTGCTTGCTTGCTCCACATGGGGGAACAATCGCTGATATACAGCTTCGTGGCGCG TGGGACTGTGATCCTGGCAGAGCACACCGACTTCGTCGGAAACTTCGGGGACGTGGCGTTACAGTTCTTGCAGAAGCTTC CATCATCCAATACCAAGTTCACATACAACACCGACGGCCACACCTTCAACTACCTCGTCCACAATGGATTCAGTAATTTT CCTATCTCCTCTGTTCATCAACTTACTTTAGCCTTTCTTTTTAATTTATAATTTACATATGGTTTATAAATTTGATTATG TAAAGTTATGTGATTGGTGTGCTACAAAACTATAATAACACCCCTACACACTGTGTTTTTGGTGAACCACTCATTTTGGT GTAAATATTTGTGATGTGATATAAGAAGAGAGATAAGTAAAAAAAGTGTATATGACGGTTCTTAGTGTTCTTACTACCGG AAGCGGGGTGAAGAATAAAAAATGGGCGGATGATCACATCGCTCAATAGCTAAATGGATGGTACTTGGCTAGCCCGAATC TCTTCCCTCCTCATCTCGCTCACCTCACTTTCTTTTTAGTTTAAAAAAAGCTAATTCGAATGAATCTCGATATCTGGAAT CGAAACCAAGACCAACGAGCCTCCATTCCATCCAACTTCTCCTTATTCTCTCTTGCTTATAACCGACCTTCTTTTCTTTC TATCTCAATATGTAATTATAGATCTATCCTACTTCTGCTAACGTTAATTTGTCAACTGCCACAATTGGTCGATCTTGATC GATCCAACCCGCTATAATATGATATGTCCAATCAAATCAATTGTTCTTTTGTCTATTAATCGCTTTCTTTCTATAGTTCT GGATAAGGAGTGGGAGTGAAGGACTTCGTCTGGCCTCTTTTCAATAGTAAGAAGCCAAGTTCAAAGAATCAGAAATACGA AGGAGAACTTAATCTCTGAATAACTCTAAATAAGAAGCATCACATCAAAAAAGGGAATTACATCGGGATATCAATCTCGT TCACATTCATCCATTTGAATGTATTTCATAACCTGCCAATGTATAGCTTTCAAGGTAAACAGACCAAGCTCTCGAAATCC AAACTAAGGAAAGCATGAGCCTCTCTCTCTCTTTCATTCGGTTGAATTGGTAACTGCATTGGCTATTGGCTATCCATTCA CAAATCATCTGAAAAAGTGGGTTGATTCCCCCACCAGATGTTTAATCACTTGTTCAATCCTATCTTAAAAGAGATGCTCA TCTGCTCTAGTTAGCTCGACAGAGTGGCAGACGAAATCTGCCTTTCTCAATAGAAATCGAGTAGACGGCAGGGAACTTCT TAGTGTTGTGAGAAAAACATTCTTCATGGCCTCCTTTATTTAGATCTAGTTCAATCACGAGTTTAAGGTTTGCGATAGAT GTTGCCTTTCCTTTTCCTAGATAAATGATCTCAAATCGGTTTTTTTATAATACAGTAAGAATCGAAACAGTAATTTATGC CTTGGGTAAATAACTCAATCGTTCACTTATCGTGCAATGATCAACTGAAAGTGATTTTTACAGATTATGGTTAGTGACAT ATGTTTATGTGGGAATTCAAGTGTGAGTAAGAAGTCTCACATTACATGATTAGGGGAGTGATGAACGCTTTATAAGTGAG ATGACTTACACCCAATGTCTTAAGGTTTTGGGTTAAAGATGTTATCTTCATTCTACTTGTAGTTTGCTATTTAACCCAAT GTGATAAACCCCCAGAGTTTTATGCATCTTTCGTGGTACAATGTTGTATTAGAGTCGATAGTTAGTGTGATCATGTAAAG GCTCCTTGTGTAAGAAGTCCTTTTGGCAATGGTTCATAGGCGGCAATGCAAGTAAGAAGTCTTACATTTTGTGATTAGGG GGTGAGCTCTTTATAAGATTACTCATACACAAAATGCCGTAATGTTTTTGGTAAAAGATGTGTCTAGTCCACTTGTGATT TTCTCTATTTTGGGTAAAGATGTGTCCAGTCCACTTGTAATTTTCACTTTAGCCCAATGTGATGATCTCCGAAAGTTTTA TGGATCTCTCGCAGCCCACCAATTTAAACCTCTGTTAAAAAATTTGCTTTTATTTATATTTTCTGAATGTGTACAATAAT TACATTGTACTCACATAATCTTTTATTTTTAGCTTATTGTGTTGTGGCAGTGGAGTCTACTGGTCGCCAGATTGCAATGG CCTTTCTTGAACGCATCAAGGAAGATTTTACAAAGAGATATGATGGAGGCAAAGCTGCAACAGCAGCACCTAAAGGCCTA AACAAAGAATTCGGGTACGTATTTATGTTTACCAAACTAAGTCACGCAAATGCGCTTCTCTGTTTTCAATTGCAGTAATA TGAACTTTTTGTTTTGTATGGTGTAGACCCAAGTTGAAGGAGCATATGCAATATTGTGTGGAACATCCAGAAGAGGTTTG CAAACTTGCGACAGTAAAAGCTGAGGTTTCCGAAGTCCAGCAAGTTATGATGGCAAATATTGATCAGGTATAGCACCATT GTTGATTCATCATCTAATTGATTATAGACTTCTTGTAAATTTCATCTCGATTGATTATATGTGGCCAACAATTGTACTTT ATTTTGTATGCAGGTTCTTAATCGTCAGGTGAAGATTGATGTTTTGGTGGATAAAACTGAGGACCTTCACGATCAGGTGC TTTTAATTGTTATCACATAAACTTAATAAACAAGTTTATGGGAACCTGCATACAAAATTGATTTAGCAATTTCATGTTCT GAACTTCTGAACATTATATATGTGTTACATGATGTGCCCGTGCGCAGTGCGCTAAGATCATTAAGATTGTTTGCCTGCTA GGTTTAAGTTGTACCCAAATTTTACCAATGAGGAATTAAATGGTAGCTGAAGTCTTTTTCAATAAATTTTATCTAAACGG ATTTATCATTGCTTCAAATTTTCGTCTTTTACTACCAATAATTACAACTTTCAATAGCATTCTCTCACAAAAAAAATCTA TTTGGGCTGTAATTGGTAATATGGTATTAATCTCAATTGCTTTGCAGGCACAAGTTTTTAGGGGGCAGGGAGACCAACTA AGGAGAAAGATGTGGTTTCAGAACATGAAGATGAAGCTAATAGTTTTTGGCATCTTATTTTGCTTCATTCTTGTAGTTGT TCTTTCAGTGTGTCGTGGGTTCAACTGTGGTGAATGAGTGTTCTCATTCATATTGAATCGCTTACAACATAGAGACCCTT AGTACATTTAATATTGTTGTATATATAGTATGACATTATAAATTTGTTTATTTGATTGACACTGTCAAATTTGAATAGAA AAAAAAAATGCGAAAAACAAAGTGAAAGGATCAAAAATCAACAATGTGCCA
CDS sequence (LotjaGi1g1v0585500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGAACAATCGCTGATATACAGCTTCGTGGCGCGTGGGACTGTGATCCTGGCAGAGCACACCGACTTCGTCGGAAA CTTCGGGGACGTGGCGTTACAGTTCTTGCAGAAGCTTCCATCATCCAATACCAAGTTCACATACAACACCGACGGCCACA CCTTCAACTACCTCGTCCACAATGGATTCACTTATTGTGTTGTGGCAGTGGAGTCTACTGGTCGCCAGATTGCAATGGCC TTTCTTGAACGCATCAAGGAAGATTTTACAAAGAGATATGATGGAGGCAAAGCTGCAACAGCAGCACCTAAAGGCCTAAA CAAAGAATTCGGACCCAAGTTGAAGGAGCATATGCAATATTGTGTGGAACATCCAGAAGAGGTTTGCAAACTTGCGACAG TAAAAGCTGAGGTTTCCGAAGTCCAGCAAGTTATGATGGCAAATATTGATCAGGTTCTTAATCGTCAGGTGAAGATTGAT GTTTTGGTGGATAAAACTGAGGACCTTCACGATCAGGCACAAGTTTTTAGGGGGCAGGGAGACCAACTAAGGAGAAAGAT GTGGTTTCAGAACATGAAGATGAAGCTAATAGTTTTTGGCATCTTATTTTGCTTCATTCTTGTAGTTGTTCTTTCAGTGT GTCGTGGGTTCAACTGTGGTGAATGA
Protein sequence (LotjaGi1g1v0585500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEQSLIYSFVARGTVILAEHTDFVGNFGDVALQFLQKLPSSNTKFTYNTDGHTFNYLVHNGFTYCVVAVESTGRQIAMA FLERIKEDFTKRYDGGKAATAAPKGLNKEFGPKLKEHMQYCVEHPEEVCKLATVKAEVSEVQQVMMANIDQVLNRQVKID VLVDKTEDLHDQAQVFRGQGDQLRRKMWFQNMKMKLIVFGILFCFILVVVLSVCRGFNCGE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 220 | 220 | 3.6E-114 | – | |
| PANTHER | 1 | 220 | 220 | 3.6E-114 | – | |
| Phobius | 1 | 195 | 195 | - | – | |
| Gene3D | 2 | 128 | 127 | 1.5E-43 | – | |
| SUPERFAMILY | 6 | 121 | 116 | 3.36E-27 | ||
| CDD | 7 | 121 | 115 | 2.45495E-33 | – | |
| ProSiteProfiles | 10 | 114 | 105 | 27.237 | ||
| SMART | 31 | 113 | 83 | 6.2E-25 | ||
| Pfam | 34 | 111 | 78 | 3.3E-21 | ||
| SUPERFAMILY | 125 | 192 | 68 | 1.1E-19 | – | |
| Gene3D | 129 | 214 | 86 | 4.8E-25 | – | |
| Pfam | 130 | 214 | 85 | 2.5E-29 | ||
| ProSiteProfiles | 130 | 190 | 61 | 15.927 | ||
| CDD | 130 | 188 | 59 | 7.02239E-22 | – | |
| PRINTS | 135 | 154 | 20 | 1.1E-14 | ||
| PRINTS | 155 | 174 | 20 | 1.1E-14 | ||
| PRINTS | 191 | 210 | 20 | 1.1E-14 | ||
| TMHMM | 196 | 218 | 23 | - | – | |
| Phobius | 196 | 218 | 23 | - | – | |
| Phobius | 219 | 221 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi1g1v0585500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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