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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0586200 |
| Transcript ID | LotjaGi1g1v0586200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase; TAIR: AT3G24800.1 proteolysis 1; Swiss-Prot: sp|Q8LBL5|PRT1_ARATH E3 ubiquitin-protein ligase PRT1; TrEMBL-Plants: tr|I1KZ98|I1KZ98_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0586200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:112604029..112612064) extracted from Lotus japonicus Gifu genome v1.2.
AAAAATTATGTTATGACATCTTATACTTTTATCCAACAAAAAAAAAAAACATCTTATACTTTTTTCTGGTGCAATCTTGA ATCCCATTTGATACCGCCGCGAATTCAAAGATCAGAAAATGGAGAACAGCGAATTCAAAGATGAGATAATGGACATTGAC CATGGAGAAACCCCTGATTCCTTTTGTTGCTCCGTTTGCCTGTAAGTCTCTTCAATTCATTGCTGTTGTTTCATTATCTG CTTCTTTTGCCAATCAAGAACAAAGGAAAAGGGAAATACCCTTTTCTTTGTTATTCATCAAGGTTCAATTTTGTTCTTGA ATTCTTATTCATATTTCAAAAGGGTCACAGGAAAAAAAATTATTTGGGAATTTAGTTGAGTTCATGGGCACAATTCGAAT TTTTGTTTTTTCTTTGTGCCTTTCATGATCTTATGTTGGTCTGCATACATCATATATCTTGAATTTTATTGAATACCAAT TCATTGAATTATTTTAAGTTAGAGTGAAATTTGATCAATTATCTTAAATTATTTTTTGTGAAGCTGGTTTTGGTTACTGC ATCATTCTAAGTTGGTCTATGAGGTGCCTTATTTTCTTTATCAAATTGTACTCACTGATTTTGAATCTGCTATAATTCTG CAGGGATCTATTATACAAGCCCATTGTACTATGTAAGGCATCATTATTTTCTAGAAATTCATGTGAATTTGTTAGTAGTG TGATAATAATCAATCTTTCTCCCCTATTTTCAGCTTGTGGTCACATGTGCTGTTTCTGGTGTGTCTATAAATCAATGAAT TGTCTACGAGAGTCTCAGTGTCCAATATGTAGGCACCAATACTATCACTTTCCAACAGTCTGCCAAATGCTTCACTTTTT GCTTCTTAAGGTCTATCCTGTTGCGTACACCAGAAGGATAAATCAAACTCTTGGTATGTCTCTTTCTCTAATGGCTTATA TACGAGCATATTAAAATATACATGTGCAATGTTTCTTATTCAGTTACTTTTTGTAAAATCATTTTATTTTATGTGATACT TCTGTTCAAAAAAGCTTTAGAGAGAGGTGTGCTGTTTAATTGTTATTTTTAGTATTGTGAGACTTCTCTACTGGCTTATT GTTATATTTTGTTGATATTTTTTTCTTGAGAAGTGACAATGCTAAAGAATATTTTTCTGTTTGTTTTTAGTCATTCATGA ATCATGATCATGGGTGGAATTTTACACAACTAGTCTAGTTATGCTCATACACCACAACAAAATAAAATGAGTTGCTGGCA CACTCTTGTTGAATGCCATTGCTCCTTTGACGTTTTGGGGGAATGTTATTCTTACTGCTGGATATTTAATAAATAGGATG TCGTTTTCTGTGTTAGGAAATCAAATTCCCCATTCCTTGATGTTTCCTGAATGCTCTTTATTATGGCCCTCCTTGTTTTT TAAGGTACTTTTTTTGTTCATGATCTCCACAACATGATAAGCCGTCTACTCACTATCCAGTGTTCTTTTCTTGGATACTC TCATGTTCAAAAAGATTATTGATGTCACTCTTCTACCACTCATCGGTTCTACACATCAGCAAATATCACTTTTTTTGAAG ATACACCATACTTAGCTACTCTAGGTTTCCCTTGCTTAGGTAATGCATGTTCCTCAGTTAGACTATGTTTTGTCTGCTAC TACTCTCGAGGCACTAAATACTTCATTACCACCAAAACCGGATCCTGACTTGCACTGTTTTAGCATCACTTTCAAGTGTT TGCCACGTTCCACTGTCCCGGACACCACTCTTGCTACTTAGCCAAGTGATTTAACTCCTGCTCCAATCACTTCTCATGCT CCAGCTCCACCTGCTTCCACTAATGTTTCCATTTTCCTCCATAAAGGTAAATGTTCTGCCATTAATCCTCATCATGTTTA CAATTTTCTCTCTTATCTTCGTTTGTCTCCTACGGTCCTACCTACTATATGCCTTTGTCTCTGCTATTTCATCAGTTACC ATTCCTAAGACAGTACAGGAAGCTCTATCCCATCCAGAATGGCGACAGGAAATGATTGAGAAGATGGAGGCTTTAGAATC TAACCACATAAGGATACTTGTCCCACCTCCTCGTATGACCTCACCTCGTCACCTTGTCTCTTTAGCTATTGCTGACATGA AGCACCCATCCTTCCTTATTTCAATCAGATATTAAAGTTCTTTCTTGTATGTTGACTTGAAGGCTGAGATCTATATGGAG TAACCTCCTGGGTTTTTGCCTCCGGGGTATGTCTTGTGTGTAAGTTTCAGAAGTACCTATATGGCTTAAAACAGTTGTCT TGAGCTTGGTTTGGTCATTCAGCAAAGTTTTACAGCAGTTTGGGATGATTCTCTGCGATGCATTCCTTTTTTCTTCCTTA AATTCTTATCATAAATGAATATATCTATCTTGAAGTCTGTGTTATGTTGATGATATTGTGATTATAGTTATTATCAAGAA GGCATCAAGGCCCGTAAGCAACACTTATTTCAGTACTTTTAGACTAAGGTCTTAGGTCCTTTGCATTATTTTCTTAGGAT TGAGTCGACTCAGTCAAAGTCAAGCATTGCTATCTTATTGAGAAAGTATGGTCTAGATATTTGGAGGGGACTAGTCTTCT ATATCAAAAACCAGTTAGGACCCCATAGATCCTAATGTCAAGCTTCTGCCCAATCAGGGGGAGCCCTTTACTGGCCCAGG AAAATACTGGAGACTAGTGGGAAGTTAAATTATCTCGCAATTGTCAGGCTTGATATATCATTCATAGTTAGTGTTGTAAC CAAAGTATCAATTCTCCCCCTAATAGTCATTGGTAGGTCGTTTTTCGTATCAGGTTACAGTGGTATTGTTGGATACTCAG ATGTGGATAAGACTGGTGATGCGAGTGATTGGCAGTGTACTACAGGTTAATTCTGATTTGATGTTTCCCCTTTTCTCTGG AAAAAGTAAGAAGCAAAGTGCCGTTGCTAGATCAAGTAGGTTCACACAACTTGTGAACTCCTGTGGTTGAAGCATTTAAC TTAAGAGTTGCAGTTCTGTGGCATTGGCCCTATGGATAGAAATGTGTGATAACTAGTCAGCTTTTCATTTCTCCTTTCAA TCCAGTCTTTTATGAGAGAATAAAACATATAGAAGTTGGTTGTCATTTCATTAGAGAAGAAAGTCCTTTCTGGCGTCAAC GAAACCTCATCTGTTTGCTCCAAGGATCAATTTGTAACTACCTTCACCAATTCTTTAAGGGGTCTGAGGATATATTCTAC ATATGTTCCAAGCCGGATGCATATGATCTATAACCTCCAGCTTGAGGGGGAATATTGAGATATATGTTATATATGTTGAG ATATTATGTAATTAAATTGTTCTCCTATTTCGATGAATAGATCATTGATTGATTAAGATCAGATTTCCTTTGTAATCTCA TTATTATCGTTTCCTAATATATTTGATTCTGCAATCCCTGAACTTCAGAGACTGACTAGGAAACCTTGTATATAGATATT GTACATCTCAACCGTGGAATACATATCAAATATTCAGAATATTTTCTGTCTCTAGTATCTGATAGCAAATTATTTTAAAA AATTATCTAAATGTATCCTCCATTTGGTTCCCATGATTACCGCCGCCATATATACTTGATATAGGCATGTAGGATTTTCT ATGTGTAATAGCATGTATAAATATTTGCATCTCTGTTTTGAATTCTATTTTCTAATGTTCTGTGGATATTGTAAACTTTA TTATATGATTTTCTTTCTATCCTTGTTACCATATCCTGATCCTTGGTATTTCTTGTATGCTTTTTGATGATGCAGTTCTT GACATGACTTTCCATTAAATGTGTAATTATCATAGAAGATTACTTTTGGACTTCTTATCGGGCTTAGTTACAATAATTCT TCATTCATCTCTTGTTTTAGAGGAAGAAAAGAAATCGGGCTTCTATTCCCCTGAATTTGATCCTGATACATGTGAATCCC AAGCTAAATTTGGTCATTCTGGTAGCCCTTCTTCCTCCTCTATTACACATCTCGTGCCCAGCTTATGCAACGTGGGAACT TCTGAAGGTATGGAACAATCAAAGTCCACCAACCATGAAGGAGACGATGGCACCATCCATTCTAAACGCTCTTCCATTGG AGAAGCTGAAATTATTGGGACTCCTATTAAAGGACAAAAATCGTCTCAGGATGAGCTTTGCCCACCACAGAAATTGTCAG TTGCAGATGTGATGTGTATAATGTGCAAGCAACTTCTCTGTCAACCTGTAGTCCTTAATTGTGGCCATGGTACTCAATCC ATTTATGTTTTCTTTTATTTTAAATTGATTAAGACCATCAATAACAGAACACTTAGTTGGCATTTTTTTGTTTTTCTACT TTCCCTCATTTTCTATAGTATACTGTGAAACTTGTGTCATCAAGTTAGCTGATGAGATGCTTAGATGCCAAGTTTGCCAA AGTCCGCATCCAAGAGGATTTCCAAAAGTGTGTTTGGAGTTTGATCAGTTTCTGGAAGAACAATTTCCTGAAGAATATAA ATGGCGAAGAGATGCTATTGAACTAAGGCAGATCAAAGTGAAACCAGAGACCCCTTCTTCTTGTATGTATATTTGACTAC ATTTTTTTATGCATGTTTGATATCTTGAAACATATATTTTTTTTATACATGCTTATATTCCAGCTTTCCTTTGAGATATT TGAATTTTATGTACAGTTTGGCCTGCTTGAGTACCGAGAGTTAACCTTGCAAGCACCTGCACTAATGAGAAATAGTTGAA ATTAATAGAATCTAAGGATATTTCACTGAATTTCTATAAGGATTAGAATCCAAAGTTGAAAGTTAGTGGTGGTAAGTTGT TCATATTTCATTTTGGCCACCGAAATTTATTTTAAAAAACTGAATAATTCAGCTTATAGAGTAAATTAATTGACTTTCAT TAAGGTTTACCTAACTTCCACATAGTCACTGTTGTGCTTGATTTGGGTGTCAGTCTTAAGTTGTGAAGATGAAATATAAC GAGCTGTATAGTGAAATCTGTCTTAGATGTGCAGGTCCTAATGTTAGTGTACATGTATATCAACTTATAGTCTTCTAGCC TTGCTTTTGGTTTCCTTTGTGCTTCATTTTTTGTCTGAAAACTGTAGCCACTTAGCTGGACATTTTTCAACCTTTTAAGG CTTATATTATTTAAAATAATTGCCTCAAACCCTTTAGCTTTCATCCATTTGTAAACAGCCACCACAAATTATCCCCAATC GTAACCTTTCGTACTTATAAGAAATACTGATAAATATTGTCTGGCACACACCTTATTTTAATTCCTAAGTCCATTTTTTA TTTAGTGAAACCCACATGAAGTTCACCCAATAATAGTATGTGGAACAATGTCGATAGCTAGCATTTATCCATATTAGTTT TTTCATTCAATTTGTAATTGCACCTATTTAATTTAATTATTTCACATATCTTTTTACAAATAAAAAAAAGAAACAGACCT TTCTTTCTCACTAGAACCTTTCATTGCTCTTAGAATTTGGACTATGCCTAACTTTACCCCAAAAGTTAACTTAGATAAGA CCTTATAATAAAGGGTAGATTTATGCTATTTTACAGTGTTCTTCCAGTGACTATGTATTTTCTTTCAGGTTCATCAAACA ACCATAACAAAGGAGAAAAAATCGAATTTTGGTCTGATCCTGAGTCAAAAGTTCATATTGGAGTTGGTTGTGATTTTTGC GGGGTAAAAGCTCTAGTCCATCATAATCATATGTTGCGTTTTTGTTGATGTTGTACTTAACTTATTGTTTTTGTTGTTGT TATTCATTATTTGTCATTACTCATTACTATTTTTATGGGGGGGGTGGTGGGAGAGGGTGGTCTAGTCTAGGTTGGTGAGA GTATGAATGCATGTGAATATTTCTATGGTAGTGTATAGATTTTTCTGTTCCGTTCATTGACCTAAGATAGGTACTCATCA ATTTATGTGGTTGCTTGCCTTTGATTACTGGCAGTTAGTTGACTTGCAGTTCACATTTGAGTTCTCGCATTTGCTCAAAA GGGAGCAACACATACCCTGTTTTAACTGCAAACCTGAAACGGTTTGGCTTATTTGCACCAGTGCTAATTAAATGATACTT CCACAGATATTCACCTCATCATTATTATTATTGTTTTCAAATTGATCGATAAGGTCTCACTTGGCAATTTCATTCTTTTA AAGCCATATTTTGTATGTGTTTCCAAGGTGGTAATTTATCTAATCTTCCCTCAAGTTCCCCCTCTTTTATAAGGGAGCAT GTTGATATAGCATTGTGGCATTGACGTTGAAATCCATGTGATCAATTCTTGATAAAAGGTGAAAAGGCTTGGTCGTTGTT ATTGTTTTCATTTTTGTCCTGTCATCTAGCTTTTAAAATTCGGTGATGCCTAACTCTGTCCCAAAAGCTAGCTTAGGTGT GAGGGTTGCTCTATCCTTTATACACACTTTTTTGGCCATATCTCTAGTCAATGGGAGACTTCTCAACAAACTATAAATTG TAGGTTACATGCCTAGCTTTTTTCCATTATGCTAGTTTTATATCTTTCAATGTTCCAATGTCTATACTACTGTGCTTATA GTTATCTGCACTCTGCAGTGTGCTAACTGTGTAGCTTGTTTTTGCAGATGTATCCTATCATTGGAGATAGATATAAATGC GAGGACTGTAAGGAGAAGATGGGTTTTGATCTTTGTGGTGATTGCTATGACACCCGTTCCAAGCTTCCAGGCCGATTTAA TCAACAACACACCTCAGAGCACAGATTCAAGCTTGTACAACCCAATGTTATTCGTAACATAATGTTGAGGCTGGTCACGG GACAGTTAGGGGACAGTTCCATTGTCAATGAGTCTTTAGAAAATCTGGAATTTCCATCTGAAGCCTCCGGTTTGTTTGAT GATGGAGAAGATAACCAGAATGATCCTGAAGCTACCAGTTGAAAAACTGAACTCACAAAATGTCCATAGAATCTTCTGTT GGTGTGTGGGGGTTTTAGTTATCTTTCTGATCTAACAGGTTCTGATGATGCAAGGCTTCAAGCAAGTTTGCAAATCAATT GGTTGGCAATTCTCAGTTGCTCGTGATTTTCCTACTTCATGCCAACTTCTAGTTCTTGGCTTTATTTTTACTACGCTATT GAAGGATCTGGATTCTCTCATGTGGAAACTTTCACATGTTGAAATCCTGCATTTCTTTCTCTCTTCATAAAGTGAAACCC TTTGAACTTTTATGAAGCGAGAGATAGATACAATGTTTCACTTAACATCCTAATCCCCAATTGAATATGTCTCCAGCATG TGGCAATGCTTGACCTATTTCATCAATGTCATTAGATGCAGACAATTTTGTTAGACCTTCATGGACCTGGCAATTTGAAG ATATTCAGGGGAATGTAAGGATTTTTCATTGTAATAATTCTTATATCATTCTGAATTATAATCCAAGGAACATGTTTTAC TTTTACTTTTGTTTAAGTGCTAATTTCAATCCACCAAAATGCATGTATGGTAATGACTTCTATTTGTATTGAATGATTAG TAGGACAGATGTTGATAGAAACTTTTGTCTCTTTTTCTTTCCCTCGTTTTCAAAGTCGTTTTTCTAAATATAGTTGTTGT TTTTCTGTCCAAATATGGTTTATGTTGAGGGATTATAACTGCTCTTCAAATCAGACAGCGAATTCCATAGAGCCCGCTTT CCTGCTCTATCGCATGGTGCGTATACATTAAGGAAAACACACACCGAATCATCAGCTACATTCTTGCCAGCAATGCAGAT GAAGTTATGTCCCTTGTCGCAACTTGTAATTTGAATGAAGCCTTTCCTCCATAAACACAAAAGTCTCCCCTCCTCTATTA ATCGCCAGAATGAATTCCCACTCGAAGGCTGCATTGCCCCAAATCCTTCTACAACAACCTGAATCCACCTCCTGAAGCTT TGTCTCTTGCAAACAAACCAAATCAACTTTATACTG
CDS sequence (LotjaGi1g1v0586200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAACAGCGAATTCAAAGATGAGATAATGGACATTGACCATGGAGAAACCCCTGATTCCTTTTGTTGCTCCGTTTG CCTGGATCTATTATACAAGCCCATTGTACTATCTTGTGGTCACATGTGCTGTTTCTGGTGTGTCTATAAATCAATGAATT GTCTACGAGAGTCTCAGTGTCCAATATGTAGGCACCAATACTATCACTTTCCAACAGTCTGCCAAATGCTTCACTTTTTG CTTCTTAAGGTCTATCCTGTTGCGTACACCAGAAGGATAAATCAAACTCTTGAGGAAGAAAAGAAATCGGGCTTCTATTC CCCTGAATTTGATCCTGATACATGTGAATCCCAAGCTAAATTTGGTCATTCTGGTAGCCCTTCTTCCTCCTCTATTACAC ATCTCGTGCCCAGCTTATGCAACGTGGGAACTTCTGAAGGTATGGAACAATCAAAGTCCACCAACCATGAAGGAGACGAT GGCACCATCCATTCTAAACGCTCTTCCATTGGAGAAGCTGAAATTATTGGGACTCCTATTAAAGGACAAAAATCGTCTCA GGATGAGCTTTGCCCACCACAGAAATTGTCAGTTGCAGATGTGATGTGTATAATGTGCAAGCAACTTCTCTGTCAACCTG TAGTCCTTAATTGTGGCCATGTATACTGTGAAACTTGTGTCATCAAGTTAGCTGATGAGATGCTTAGATGCCAAGTTTGC CAAAGTCCGCATCCAAGAGGATTTCCAAAAGTGTGTTTGGAGTTTGATCAGTTTCTGGAAGAACAATTTCCTGAAGAATA TAAATGGCGAAGAGATGCTATTGAACTAAGGCAGATCAAAGTGAAACCAGAGACCCCTTCTTCTTGTTCATCAAACAACC ATAACAAAGGAGAAAAAATCGAATTTTGGTCTGATCCTGAGTCAAAAGTTCATATTGGAGTTGGTTGTGATTTTTGCGGG ATGTATCCTATCATTGGAGATAGATATAAATGCGAGGACTGTAAGGAGAAGATGGGTTTTGATCTTTGTGGTGATTGCTA TGACACCCGTTCCAAGCTTCCAGGCCGATTTAATCAACAACACACCTCAGAGCACAGATTCAAGCTTGTACAACCCAATG TTATTCGTAACATAATGTTGAGGCTGGTCACGGGACAGTTAGGGGACAGTTCCATTGTCAATGAGTCTTTAGAAAATCTG GAATTTCCATCTGAAGCCTCCGGTTTGTTTGATGATGGAGAAGATAACCAGAATGATCCTGAAGCTACCAGTTGA
Protein sequence (LotjaGi1g1v0586200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENSEFKDEIMDIDHGETPDSFCCSVCLDLLYKPIVLSCGHMCCFWCVYKSMNCLRESQCPICRHQYYHFPTVCQMLHFL LLKVYPVAYTRRINQTLEEEKKSGFYSPEFDPDTCESQAKFGHSGSPSSSSITHLVPSLCNVGTSEGMEQSKSTNHEGDD GTIHSKRSSIGEAEIIGTPIKGQKSSQDELCPPQKLSVADVMCIMCKQLLCQPVVLNCGHVYCETCVIKLADEMLRCQVC QSPHPRGFPKVCLEFDQFLEEQFPEEYKWRRDAIELRQIKVKPETPSSCSSNNHNKGEKIEFWSDPESKVHIGVGCDFCG MYPIIGDRYKCEDCKEKMGFDLCGDCYDTRSKLPGRFNQQHTSEHRFKLVQPNVIRNIMLRLVTGQLGDSSIVNESLENL EFPSEASGLFDDGEDNQNDPEATS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 131 | 130 | 1.2E-13 | ||
| PANTHER | 9 | 394 | 386 | 1.5E-157 | – | |
| PANTHER | 9 | 394 | 386 | 1.5E-157 | – | |
| SUPERFAMILY | 18 | 74 | 57 | 2.33E-10 | – | |
| Pfam | 22 | 67 | 46 | 2.5E-7 | – | |
| SMART | 24 | 63 | 40 | 2.7E-5 | ||
| CDD | 24 | 63 | 40 | 1.26331E-6 | – | |
| ProSiteProfiles | 24 | 64 | 41 | 11.678 | ||
| MobiDBLite | 144 | 165 | 22 | - | – | |
| Gene3D | 155 | 270 | 116 | 3.9E-11 | ||
| SUPERFAMILY | 200 | 261 | 62 | 2.99E-8 | – | |
| ProSiteProfiles | 203 | 241 | 39 | 10.675 | ||
| SMART | 203 | 240 | 38 | 0.004 | ||
| ProSitePatterns | 218 | 227 | 10 | - | ||
| Gene3D | 304 | 370 | 67 | 1.2E-12 | ||
| SUPERFAMILY | 305 | 370 | 66 | 7.66E-18 | – | |
| ProSiteProfiles | 310 | 365 | 56 | 10.34 | ||
| Pfam | 312 | 351 | 40 | 2.1E-7 | ||
| MobiDBLite | 404 | 424 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0586200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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