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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0607200 |
| Transcript ID | LotjaGi1g1v0607200.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA exonuclease 4; TAIR: AT3G27970.1 Exonuclease family protein; Swiss-Prot: sp|Q9GZR2|REXO4_HUMAN RNA exonuclease 4; TrEMBL-Plants: tr|A0A151QYX1|A0A151QYX1_CAJCA RNA exonuclease 4; Found in the gene: LotjaGi1g1v0607200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:115199607..115202869) extracted from Lotus japonicus Gifu genome v1.2.
TACAACAGGAACAAGTGTGCAGCATGCTTCAGGCAGTTCAACAGAATAGAGCACCTTGTGGAGCACATGAGGATCTCATA CCATTCTGTTCATGAACCAGTCTGTGGCATTTGCAGGAAACACTGCAGGTCATTTGAGTCTCTCAGGGAGCATCTTATAG GTAACCTCCTCTTCATAAATTGTAAACAATCAAACATTAAGAATCTGGTAAGGAGAGTTTTGCTGAGCACAAATGTCCTA CTCGGCTCAAATTACAGGATTGTCTCAGTGGATGATACTTGTGGTTTAGAGATAAAAAAATCAATCAATAAACTTTGCTT CATGTTACAAATTAGGGTATGATAATCCTGGATAACTTCGAAGAATCGTGTTCGCAGTGGCGGAACTTGACATAAAAGTT TGGAGGAGCTAAAATATTGTGTAAATTAGATTATGTTTTGTTTGATATTTTTTTTTTCAAATACAAAGGTTATTTCACAT ATTTTTATGTACTAATAAACAAGTTAAAAATAAAAAAGTTAAAATTTATCACATAAAACTTGACTCGGAAAATAAAAATT TACCATATTAATTTTAATGTAGATCTATGTTGAGTTGAGTTCGTAAAAATGTACACACACCAAATAAAACATCCAACAAA CACTCTCGATAAGAAATAAAAGAAAAGAGAGAAAATGAAAGAGAAATAATAGATGTGATAGATGATATAAGAAAAAAATG AAGAGAAAAATGAGATGTTTGATAGATGTTAACATTGTGTAATATTTAAAGACTCACACTTTTTATACACCCTAATTTTT CTCTCATCTCTTTTTTTCATATCACTTTATGTCATATACCACATTTATCACTTATCTCTCATTTTTTAATCATCTCACTG TAAGTGTCTAGTGATCTTCATCAAACATTATAAAAAAATGAAAATATATACAGATTACAATTTCACTTTTGATTATCAAG AACAATTTTTAGAAAAAGATAATTAAAATGAAAAGACAATTTCTTTAGTTTTAATTGTAGAGATATATAGGTTTCACCGC ACGTACATCAAAACAGAAAAAGAGATAGGATGCAAAGCTAGTATTTGAAACATGTGATGTGAGTGTGAATAGGTAGCTAG GACAAGACAAGAGAAAGAGAGATTGCTTTGAAGTATTTTATTATTATAATTTGCTAAAAGCAACACATTTGTATCTTATT GATACTATTAGTTTTTCTGACAATGGTGAGGGAGCTGCAGCTCCCCTATGTCACCATGAAGGTCCGCCGCTGCGTGTTCG TACACTTTCAGAACAAAGTATTTCGACCTTATTCTTGCCTGGGTTCACGAAATCCTTGTTGGGATAATTCTGAAGAGCAA TCTGCTTCAGGCAAATGAAGAACAGATCAAGAATGTAGAGATATATCGGTTTTGTTTTTCTATGTTTTCAACTAAAGGCC AAATGACTCCTTTATAAGGAGTTTGTTTCAGAAACTGGGAAAAACGGTTAATAAAACCGAATGTCTTTTCGAAAAATTTC GCGGTCGATTATGCGTTGGCTCAACAAGCGTGCACTCCGCACTACCTAACTCGTTTCCGAGCTTAACGCATAATCGCATC GGCCTTCAATGAATCACATTACTACTAAAATTCATTGATGATACTAAAATCACCAACACTTCACACTGTGATCTCACCCA CATGAGAGAGGAGAGAGAGAAATAAGATATATGATGAGTAATATGATAGAAAAAGAAGAGAACTGTTTGTGACGAGATCT TGATATGGTTCTTCTCCAGGTCCATTGCCAAAACAGGAGTGCAGAGACATCTTTGCCAACCGAGGGTGCAAGTTTTGCTT GAAAATCCTTGACAGCCCTAACTCTCGCAGGATCCACCAAGAAAAATGCCAACTCTCTGGAATAAATGTATGAACTTCTC TCTTTGAATCTTAAAAAGAACTTATCAATGTGTATTAGTATATCCTCCTCAATACTAACTTTTTCTACTTATTGTAGGGA ATAATTGGTCGCTTCTCAAACTTGGGTGTTCGTGACAATTTGACAATTGGTGGTGGAACAAGGGGACCACAAGTAGTTGC ACTTGCCTGTAAAATGGTTGGAGGTGGCAGTGATGGCTCACTGGATCTTTGTGCAAGAGTCTGCTTAATTGATGAGAGGG AGAACATCATCTTCCACTCTTACGTCAAGCCACTCCTTCCTATTACAAACTATAGGTCGGTTAAATTCATGAAAATAGAC TCTTGCGGCCAAGAATACTCTACTCTCACGCACTCACGCAATTTGAGTCGTTTGATTAAGACCGGTCCATCGGCTTAGAT TTTAATTTATTTCCATTGTAAGATCTGTATGAAATATATGAAGCGACCAATCTTAATCAGACGGCTCAAATTATGTGGCT ACTTGGCTGCGATAATGCAGACTATCTCTTATGGATCCATATATCTAGTATTCTGAACTGGGGTGCTGATTGATTAACTG CAGGTATGAGACAACTGGCATTAGACCAGAATCCTTGAGGGATGCAATGCCTCTGAGACAGGTTCAGAGGAAGATCCAAG ACTTCGTTTGCAATGGGGAACCAATATGGACAATTCGAGCAAGAGGTGGAAAAGCTAGGACTCTTGTGGGTCATGGTTTA GATCATGACCTTGCATGCTTGCAAATTGAATATCGAGGAGAAAAAATAAGGTATTATTGATATCCAATTAAGTTATTGTT TGAGCAGAACAAACATATTTGAATTTTACTTTAAATTCGATCATATTGAATGCTTTGAATTCGACTATATTGAACAAATC TTTGTAATTTACACAGGGACACTGCGAAATACCCTCCACTGATGAAAACAAGCAAGCTTAGCAACTCACTCAAGTACTTA ACACAAGCATATCTAGGGTAAGTATCTACTTATTACAATTCAACAAAAGAAATTTTCTTGTTATCAATTTATATATTTTA GCTTTCAAAAAAGTAAAAATAAATATATGTCCAATATTTGTATGTTTTGCAATTATGTAGGTATGACATTCAAAGTGGGA TACAAGATCCTTATGAAGATTGTGTTGCAACAATGAGGCTGTACATGAGAATGAGATCCCAAGTGCACAAAATGGAGGAT AACCCTTTGGCAACTGACCCACAGAACAGGAATAATTTTGCTTCATGGAGGCAAAGTGAACTTGAAAGAATGAGTCCAGA ACAAATGATGGAAATCTCAAGGTCTGACTACTACTGCTGGTGCTTGGATTCCTAAAGTTGTCC
CDS sequence (LotjaGi1g1v0607200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGATCTCATACCATTCTGTTCATGAACCAGTCTGTGGCATTTGCAGGAAACACTGCAGGTCATTTGAGTCTCTCAG GGAGCATCTTATAGGTCCATTGCCAAAACAGGAGTGCAGAGACATCTTTGCCAACCGAGGGTGCAAGTTTTGCTTGAAAA TCCTTGACAGCCCTAACTCTCGCAGGATCCACCAAGAAAAATGCCAACTCTCTGGAATAAATGGAATAATTGGTCGCTTC TCAAACTTGGGTGTTCGTGACAATTTGACAATTGGTGGTGGAACAAGGGGACCACAAGTAGTTGCACTTGCCTGTAAAAT GGTTGGAGGTGGCAGTGATGGCTCACTGGATCTTTGTGCAAGAGTCTGCTTAATTGATGAGAGGGAGAACATCATCTTCC ACTCTTACGTCAAGCCACTCCTTCCTATTACAAACTATAGGTATGAGACAACTGGCATTAGACCAGAATCCTTGAGGGAT GCAATGCCTCTGAGACAGGTTCAGAGGAAGATCCAAGACTTCGTTTGCAATGGGGAACCAATATGGACAATTCGAGCAAG AGGTGGAAAAGCTAGGACTCTTGTGGGTCATGGTTTAGATCATGACCTTGCATGCTTGCAAATTGAATATCGAGGAGAAA AAATAAGGGACACTGCGAAATACCCTCCACTGATGAAAACAAGCAAGCTTAGCAACTCACTCAAGTACTTAACACAAGCA TATCTAGGGTATGACATTCAAAGTGGGATACAAGATCCTTATGAAGATTGTGTTGCAACAATGAGGCTGTACATGAGAAT GAGATCCCAAGTGCACAAAATGGAGGATAACCCTTTGGCAACTGACCCACAGAACAGGAATAATTTTGCTTCATGGAGGC AAAGTGAACTTGAAAGAATGAGTCCAGAACAAATGATGGAAATCTCAAGGTCTGACTACTACTGCTGGTGCTTGGATTCC TAA
Protein sequence (LotjaGi1g1v0607200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRISYHSVHEPVCGICRKHCRSFESLREHLIGPLPKQECRDIFANRGCKFCLKILDSPNSRRIHQEKCQLSGINGIIGRF SNLGVRDNLTIGGGTRGPQVVALACKMVGGGSDGSLDLCARVCLIDERENIIFHSYVKPLLPITNYRYETTGIRPESLRD AMPLRQVQRKIQDFVCNGEPIWTIRARGGKARTLVGHGLDHDLACLQIEYRGEKIRDTAKYPPLMKTSKLSNSLKYLTQA YLGYDIQSGIQDPYEDCVATMRLYMRMRSQVHKMEDNPLATDPQNRNNFASWRQSELERMSPEQMMEISRSDYYCWCLDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 317 | 317 | 1.2E-173 | – | |
| PANTHER | 1 | 317 | 317 | 1.2E-173 | – | |
| Gene3D | 97 | 286 | 190 | 1.5E-42 | ||
| SMART | 99 | 273 | 175 | 3.6E-26 | ||
| CDD | 101 | 264 | 164 | 3.72403E-76 | ||
| SUPERFAMILY | 113 | 271 | 159 | 2.77E-23 | ||
| Pfam | 120 | 262 | 143 | 5.0E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Biological process | RRNA processing | Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. | ||
| Molecular function | 3'-5' exonuclease activity | Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end. |
Expression pattern of LotjaGi1g1v0607200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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