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cd06144

Source: CDD

Description

REX4_like

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006364
Biological process RRNA processing Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
Subterm of
Part of
GO:0008408
Molecular function 3'-5' exonuclease activity Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end.
Subterm of

Associated Lotus transcripts 9

Transcript Name Description Predicted domains Domain count
Lj0g3v0255239.1
– PREDICTED: RNA exonuclease 4-like [Glycine max] gi|356549691|ref|XP_003543225.1|
Domains
17
Lj0g3v0255239.2
– PREDICTED: RNA exonuclease 4-like [Glycine max] gi|356542307|ref|XP_003539610.1|
Domains
9
Lj3g3v0304790.1
– PREDICTED: RNA exonuclease 4-like [Glycine max] gi|356556710|ref|XP_003546666.1|
Domains
12
LotjaGi1g1v0607200.1
– RNA exonuclease 4; TAIR: AT3G27970.1 Exonuclease family protein; Swiss-Prot: sp|Q9GZR2|REXO4_HUMAN RNA exonuclease 4; TrEMBL-Plants: tr|A0A0R0EJ11|A0A0R0EJ11_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0607200
Domains
15
LotjaGi1g1v0607200.2
– RNA exonuclease 4; TAIR: AT3G27970.1 Exonuclease family protein; Swiss-Prot: sp|Q9GZR2|REXO4_HUMAN RNA exonuclease 4; TrEMBL-Plants: tr|A0A151QYX1|A0A151QYX1_CAJCA RNA exonuclease 4; Found in the gene: LotjaGi1g1v0607200
Domains
11
LotjaGi1g1v0607200.3
– RNA exonuclease 4; TAIR: AT3G27970.1 Exonuclease family protein; Swiss-Prot: sp|Q9GZR2|REXO4_HUMAN RNA exonuclease 4; TrEMBL-Plants: tr|A0A0S3RW52|A0A0S3RW52_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0607200
Domains
14
LotjaGi3g1v0024300.1
– RNA exonuclease-like protein; TAIR: AT3G27970.1 Exonuclease family protein; Swiss-Prot: sp|Q9GZR2|REXO4_HUMAN RNA exonuclease 4; TrEMBL-Plants: tr|A0A0B2RL39|A0A0B2RL39_GLYSO RNA exonuclease 4; Found in the gene: LotjaGi3g1v0024300
Domains
14
LotjaGi3g1v0024300.2
– RNA exonuclease-like protein; TAIR: AT3G27970.1 Exonuclease family protein; Swiss-Prot: sp|Q9GZR2|REXO4_HUMAN RNA exonuclease 4; TrEMBL-Plants: tr|A0A0B2RL39|A0A0B2RL39_GLYSO RNA exonuclease 4; Found in the gene: LotjaGi3g1v0024300
Domains
14
LotjaGi3g1v0155200.1
– RNA exonuclease 4; TAIR: AT3G15080.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q91560|REXO4_XENLA RNA exonuclease 4; TrEMBL-Plants: tr|A0A151R8G2|A0A151R8G2_CAJCA RNA exonuclease 4; Found in the gene: LotjaGi3g1v0155200
Domains
14

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 11.11