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LotjaGi1g1v0632700.1

Overview

Field Value
Gene ID LotjaGi1g1v0632700
Transcript ID LotjaGi1g1v0632700.1
Lotus japonicus genome version Gifu v1.2
Description RING finger protein; TAIR: AT3G26730.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q32NQ8|RNF10_XENLA RING finger protein 10; TrEMBL-Plants: tr|K7MXM8|K7MXM8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0632700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:118683188..118690573) extracted from Lotus japonicus Gifu genome v1.2.

CTAAAAGGGCTTGATTGTAATTAGGTCAGTGAGTGTATGTGTATGTGTATGTACAACTAATATTCGTGGAAGATTCGTCA AGGATACCCACCGAACCGCGAAGGCAACAACAACAACAGCAACCATAATAACAAATAAAATTCATTTATCCAATTTATTT ATAAAATTTGGTAAAGTCGAATTGAAGCTCACAGCAGCGACGAACCCTTCCAAACCCTTCCTTCCAGAAATTTCATGTCC ATCTTGCCTTCACAAGCCCAAGCATCATCATCATCTTCTTCATCTGTGCAATCACCAAACCCTAATCCCCAATATGGAAT TCCAATCAACCCTTCTCCTCCTCAACCTTCCTCTTCCCTTTCCCCTCCCCTCAACATCGCTATTGGATCCCTCCAGATCT CCGATAACCCAGGTTCGCTCGCACTTTCTGTGATTCGTTCAACTTTTTCCGTAATTCCGCATTTTACTGCTCAGTCAAAC GAGGGAAAAAACCAGGATTTTTTAAATTTTTTTTAGGTTTTTTGTAAATGCTGTGTAGGAGCTGGGTTTGCTGTTTTGTG TGAAATTGTAGTGTGATTTTTGGTTATTTTTGTTTGGGAATTAATTGGGTTACGGTTAATTGAGTTGATTAGGTGGTTAA AGGTCTAGCTAGGCTTTTCATTTTTGTTTTTGGATACTGAACTCTGTATGCTGATTGGTCATTGGGAGTTGATGGATGAG TTGGAGGGAGTGGTTTTGAGTATGTCTTAAAATGATTTTCTCTGTTTGACATTAGTTTTTCGAACGATTCATTTTGTCGT TTTGTTCGACAGGTTCATCAACTCCTGCTGCAGAAGATTCTGGTGGACCTTCCGAAAAGGTATTTTAGATTTTCCTCATG TGGAGGGAATTCTTGTTTATTTATCTATTTATTTCTTGTATTTGCCGCCGCATATATATTTAGGGTGTGTTTGGGCAAAC AGCTTAGTGAAACACTTATGCGCTTATTCTTAAGCTAATTTGAGAAACTTATTGAACCAAATTGAAAATAGGTTATAGAT AATCACAAGCTCTTATTCATAAGCTAATCTGAATAGCTTATGAAAATAAGCTCAAAACAACTTCTAGATAAGTCGTAAGC TATATACATAAGCTCTTCCAAACACTTGCATAAAAGCACTTATGCTATTACTAAGCGCTTATGTTATTGATAAGCGCATA AGCGCGTAGCCATATTCTATAAATGAGCTCAGATAGTATTTAGTAGTACTGTCTGGCTGAAATTTCCATTTTAAAGGAAC TTATTGGACATGTGTTCGATAAATGTAACTTGGCTTCTAGGAGCGCAAGATCTAGTAGAAGTGTATATTTATATGTGGTG TGTATCTGATCGTTACTTTGGTTCTCTTTTGTTTTTAGGTGACAGAATTAGGGTCTCCGAATGGTATGAAGGCTTCACCT CCACAAAACTCTAGAACTCATTCTAGGAGTTACTCTGGAAGAAGGACAGTTGGATCGTCCCCATCGATAGGGAGAACAGG AAATAGAAATCAACAGGCACCTGGGTCTGTAAATTCTCATGGAAGCACCTCTTCAGCAGGGAGGAAATCTCAGATGGTGA ATGGAAATTACTTGCTCAATTTTCAGTATGATCCAATATCCCGTTCTCAACCAAGAGGTCTTCCTCCTCCCCCTCTGTCA AGAAGGCAGAAGAGAAAACCATACAACAAAGATTTGTTTTTGCAAGCAAATTACAAATTCATAGTGCTAGACTCAGGAAA TTACTCACCTGAGTCGATGGATCCAGATAAAATGTTGCAGTGGGAAGATATTGTATGTGTGACATTTTTTACCCCCTTTC CAGTTCAGTGTCCAATTTGTTTGGAGTATCCCCTGTGCCCTCAAATAACCTCATGTGGGCATATTTTCTGTTTTCCGTGT ATTCTACAATACTTATTCTTGGGTGAGGAGGATCATAAAAGTGATTGCTGTAAAAGGTGTCCTTTATGCTTTATGATGAT ATCTGCCAAGGATTTATATACAGTCCACATCACCAATGTTAAACAGCATCAAGTAGGAGAAAATGTTGACTTCACTTTCT TAACACGGAAAAAGGATTCCTTTACCCTGTCGCATAAAAATAAACAAGAGATTGATATCACATCATGTGACAATGGATAT TTATGTGATCCCTTTTCTAAGTTCACACTCACATCAGATGTTGATCTCTCAGTGAGACATGCAATATCAGATCTAGATGG CTGGCTGGCCAGAGCTGATTCAGGTCTTGTTGATGACCTCGAGAAGCTTCCATATGTTTGTGCGGCAATGCAACAATTAG AACAGAGAAAGAAGTATTGGAATGAGCTTAGGGCTTTTGACAGTGAAAAATCTTCAAAGCTTATTGATTATGGACATCAG ATACCATCAATAGCTGCTGATGCTATGGATACTGATGATGAAAACTGTTCTAATGGATCAAGAACTTCCTCGACAGATTC CCGTGACCTAAATAAGTCAATTGCTGGAGCCTGTCAGGATCAAACCTTGGATGTGGAGAAAGTGTCAATGGAGCAGGAAA TGAAGTTGTCTTCTTCGTTCGAAGAGAAAAGTGGTATTCAAATGGATTCAAATGGCATTGGAGATGCAAAGGAAAATGAT TCGTACAATTTCTATCAGGTAACTGATGAAATTGTTTTTTGTTTTATATTCTCTATCCCGTGTTTCTTGCTTCATATTTT CCTAACTGGATCATAGATGATAGAAATATTTCATCATCATATGAATTATAAACTGATTATTCATATTATAGACTGTGGAG AAATTTGGCATCGTGTAATTATAGGTAAGACATGTTCAAACGCATTTGTTTTCTGTGGTGGGCTTGGCTGAGGATAATAA ATTAGGAGTATGAGGGTTTTCAAAGATAGATAAAGGATTTAATTGTATTACAATTTGATGCTGTATGCTTGAAAGTTTTA GAGAAAATGGGACGGAATGGAAAGGTGTGACATAAAATAGAAAAGAGGGGTGTAGATGTGTTGTGCAACTGTGTCTGGAT GATAAATAAAATGAGAGAGCTAGTATAATTTCAATATGACCTTTGTGAATGTTTTTCAAGTAGCTCAATATAAGGTTTAA TAGATGGGAAAAAAATTAAAAAGAAAATAACCACCCCTCTCTATTTCCTGGTTTAGAGGGGAACACAATGTGAGAGTTTG AGGGGGAGTAGTTCCCCCCTTTTAAACAAGGGGTGCTGTTCCCTTTCCATCCGTTTCTACTTCATTCACCTCACTACTCC TAAAACACTCTAAGGAAAAATAAAATGATGCTGTGAATCAAACGGGCCGCAGCATATTATTTGCAGCAATAAATAAAGAT CTGTATTAAATTTGGAGAAGACAAAATATGTGTTATTGCGGTTCCAAAATCTGAAACAATTCAGTGATTGATTGAGGTTT GGGGGTTGATGTAATTATAAATTACAATGCGTTATCATGACTTGTTGAGAAGGAACAAGAAGTCTGGGATCCTAGAAGCA GTTTCTAATTTGCTTTATCTATTCATTTAAATGAGTTGTATATGGCAAATGTGTACACTCTTGATAACTCTTCAATCACA AATTGAAAACTGAACTAGTTTTGATTTTGATATTTTTCATGCCATTCTAAAGATAAATTATGCTTTTAAGGTTGTCTGGT TTACATGCCGTGCTGGTTCTATTAGTGGATGCTGATGTAAGCCTGGTTTGTGTTGAAATTATGTCTCAGTAGCTGTTTGA ATTTTAAATTTAAGTTGTTAGTTTGAAGTTGTTATTTAAATTTGAATAAGTCCTAATTCTGTTAGGATGATTAGTTAGAC TATCATTGAATTTGTTTAGAGTATCTTCTGTTAGTATTTCAAATTTTGCAGATTTCTAGTCAGTTTGTTAGTTACTCTTT ACCTTTAAAAGAGCAAGTTCTGATTAATAAAAAATTAGCCTTCCATCAGAAATATTTCTCTTCTCTTTCACGTTAAAAAA AACCAACAGTTTGGTTGTCCTTATTAGTAATATATTGGCTTTGAATATTAACTATCCATGTCTAGTCATGTATAACCAAC ACAAGCCTTTTAGCTTAGTCCCTCATAATTGCTATGTGGAAACGCTGCTTTTAGTTTCATTGAACAATCCCTGAATGTTG TGTGCTTAAAGCTTTCTGTTTATTTCCCATTTAATAATGACATTTGGTTTGTATCATGTGGATTTCAGGCTGCTGATGGT CAGCATCTGATTCTTCATCCTCTGAACATGAAGTGTCTACTAAACCATTATGGGAGCTATGATACGCTTCCTCACAGGTT TGGAGAACATCAAATTATATTTCTCCTATTTGCTTGGAAAGGAAATGGAAAAATGTGTTGGTTTGTGTGCTTGAGGTTAA TTGATATTGGCATAATATGCGGAACTTCTTCATTTATGGGCCTTGAATTGAGTTGTGAAGTCTTAAATTTGGTTTATAAA CACATATGCACTGGGAAACATGGACTTGTAATTCCATAAATATTATGTCAATACAAACTTCGGTTAGCTGGTACAAAAGA CTAAAAGAGGATGTATGTTACATACGTGCTAGTAAGATTTCACCATATACGCTATTAATGCAACCAATATCTGAACTACA TCATTGATTTCAAAGTGGAATTAAACCTGAGGTATGGACTGAAATTGATGGTATTGAATAATTTCTGCTTATCAGAAACT CTTTCTTTGGTTGGACCAATGGAAATAATTTTCCATGAGAAGTTACAACAACAGTAACCACTAAGCCTTAACTGCTAGTT GAGTTCGCTACATGAAACAATTGCCCTTGGGCTCTGTCACAGGGAAAACTTTCAGTAAATGTAACATGAATTTGTATATT TTTCATAAAAAATGCCATCGTCTTGCTCTATGGTAGTGCTAGTAGATGTGGTGACGATTGTCTGTCTATTTCAATATATA GGTTGAGAATATTAGTTGACAGCATGTAGTATATTTATGTGTTCTTGTGGTTGATGTTTTTAACGAACATGTTTTATTGG TAGGAGGATTAGTGAGTATGATATGACTTTTAACAAGACTCTACTGATTGCAGAATAAGTGGAAGGATTCTGCAATTGGA GACAGTTACGCAGTCTGAGGCCATGAGGAGGCGTTATCGATTCCTGAGTCATTTTCCATTAACCACAACATTTCAGGTGC CTTTCAAAAGACAGTTATTCAGTTCCAAGATATTTTCTTATGATTTATTACAGATGTTTTCTAATTTTTCAGCTTTCTGA AATTGATTTGAGTGAGATATTGCCTCCTGAAGCACTGGCCCCATTTATGGATGAAATAAAAAAGCGCTCTAATCAGAGGA AACAACTTGCAAAGAAGGTATCAATTTATCCCTGCATACATATTACACACAGACATGCATGCATGCACAATATAATCTGG TTGTAGAGTAAAATCTCAGAAAGCTGCTTTCATCAACTTTATGTTTTAATTACTTGTTTCGTTCTTTGCAAGCCTTCTAT CTGGTATGCGATTAGGGGAAATTGTGTTGAGGAAATTTTCTCAGGAGTTGGCAAGATAGAAGCTTATTTTTTTGGTCTGG TTTCTAAGTCTGGAGCCCAACTGTTGTTAGATTACAGTTGAACCTGAGATATTTAACTTCATTCATGCTACTAACTGAAA CTGGGCCCCAAACTCTTGTAATTGCATGCTAGTGGCCTAGTGCTGGTTGTGGGGCTGCAGTTGGTATTGACTTGTGGGGT GTCATCATATTCCTTTTGCTCACATCTTACATATTGTTTTGGTTTTGGCATCAGCATATTTTTGCATGAACATCACCATG CCACTGGAATTATGATATGTTATTATTTTTAGGAACAAAGGGACAAAATGAAAGCTGAAGCTTCTGCTACTTATCCTTTT CCTGTACCGAGTTATCAGCTTACTTCTCGTGATGATCCTCCGTTCTCCATGGATGACTTTGAAGGTAATCTGCTCTCAGA ATGTGGAATAAGGAATGTCTTCACATGATTGGAAATTGTGATACAAAATGAATGAATCATGTGATCTGCAGTTGTTGAAC ATTACACATCTACATAATTTGCATTGGAGGAGTGCTACCTACACACTCTCACACTCCTTGTGATTGGTCTATTTTCTCTC TTATTAAAAAGGGTGTTAACTTTTGCAAAAATTATCCAACCGCAAGAAGTGTGTGCGGGGGCGTGTTCAAAAGAGTGTGT TGGTAGCATTTCTCTTTGCATTGTTGCAATTGTTTTAAATATCATTAATTGCAGTTAATGATGTGTTATTATGTATGTAA TGTTGGATTTGTTTTGTTTAGCTCTGGGGAATTCAGCCATGTCATCAAGTCCCCCATTGGTTGGGGAGAGAAGATTGTTC TCGAGCGTTACTAGGCTTGGTTTTGCTGCTGGTCATGATTCTCCATCATTACAAATACAAGAAGAAACTAGCGGTCCATA TAATAACAATAAGAGCACTGATTCTTCTGGTACAGCAGGTATTATGTGATTATGTATAACTTCTATATTTTCTGCTTGAC TAGATGTTTTGCTACAACTGAAGAATTAAGCTGCTTCAAGGGGGCTGAAGCTGAACATGTTTTAAGTTTCTGAACTTTTA TGATCCTGTCTGTAGGTTCGAGAAATGGGGAGACACCATCATACTCTAATGTTATATCTAGAGCAGAATCTAATAACAGC TTGAATGCACCAAAGACAAATGATGTGGGGAAGAAGGGAAAGAAACCCAATCGAGTTCTTCTGTCAACAGCTGGTGTCAG GCGTTATTGATTACTTGATCACTGACCCTTGGCACTCCCAATCTTCATCCCAGTGTGGAATTATTAGCTGTTCTAAGAAA TACATGTATTTTATGCGCATCTAATAACTTGTAGATAGGTAGACATGTGTGGAGAACTACTTTCTCTATTTGAATGACTG AGGTTCAAGGCATCCCTTCTTTGAGGCCTTAGGCTTTTTTCTTTTCTTAGCTTTTGTACCAAAAAAAGACGTGTGGAGAA AATAAATGTTTTAATATAAAGTCATGGTTTTGTAGAACTATGCACTGTCTCTACTCTCTAGGTCGAAGGTGACATATTTG ATACGATTTACTTTTTTGAAAGAACAGTTTAAACTCGAGATTACACGATCTAGGTCCTTGCCTCCTTGGTATATAAAGCT AGTGCTTTTGTTCCTATAATTTATTGACTTTTTTTGGGTATAAATATTATTGACTTTTGCTCCTATAATTTATTGACATG AGTAAATTGGGTCCAATAGTTAAACATAAATGGTTGATATGACATGCATATTAATATTTTGTTGCCACTTAATTTAATTT TTTTTTTTTTACTTTTTAAAACAAAT 

CDS sequence (LotjaGi1g1v0632700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCCATCTTGCCTTCACAAGCCCAAGCATCATCATCATCTTCTTCATCTGTGCAATCACCAAACCCTAATCCCCAATA TGGAATTCCAATCAACCCTTCTCCTCCTCAACCTTCCTCTTCCCTTTCCCCTCCCCTCAACATCGCTATTGGATCCCTCC AGATCTCCGATAACCCAGGTTCATCAACTCCTGCTGCAGAAGATTCTGGTGGACCTTCCGAAAAGGTGACAGAATTAGGG TCTCCGAATGGTATGAAGGCTTCACCTCCACAAAACTCTAGAACTCATTCTAGGAGTTACTCTGGAAGAAGGACAGTTGG ATCGTCCCCATCGATAGGGAGAACAGGAAATAGAAATCAACAGGCACCTGGGTCTGTAAATTCTCATGGAAGCACCTCTT CAGCAGGGAGGAAATCTCAGATGGTGAATGGAAATTACTTGCTCAATTTTCAGTATGATCCAATATCCCGTTCTCAACCA AGAGGTCTTCCTCCTCCCCCTCTGTCAAGAAGGCAGAAGAGAAAACCATACAACAAAGATTTGTTTTTGCAAGCAAATTA CAAATTCATAGTGCTAGACTCAGGAAATTACTCACCTGAGTCGATGGATCCAGATAAAATGTTGCAGTGGGAAGATATTG TATGTGTGACATTTTTTACCCCCTTTCCAGTTCAGTGTCCAATTTGTTTGGAGTATCCCCTGTGCCCTCAAATAACCTCA TGTGGGCATATTTTCTGTTTTCCGTGTATTCTACAATACTTATTCTTGGGTGAGGAGGATCATAAAAGTGATTGCTGTAA AAGGTGTCCTTTATGCTTTATGATGATATCTGCCAAGGATTTATATACAGTCCACATCACCAATGTTAAACAGCATCAAG TAGGAGAAAATGTTGACTTCACTTTCTTAACACGGAAAAAGGATTCCTTTACCCTGTCGCATAAAAATAAACAAGAGATT GATATCACATCATGTGACAATGGATATTTATGTGATCCCTTTTCTAAGTTCACACTCACATCAGATGTTGATCTCTCAGT GAGACATGCAATATCAGATCTAGATGGCTGGCTGGCCAGAGCTGATTCAGGTCTTGTTGATGACCTCGAGAAGCTTCCAT ATGTTTGTGCGGCAATGCAACAATTAGAACAGAGAAAGAAGTATTGGAATGAGCTTAGGGCTTTTGACAGTGAAAAATCT TCAAAGCTTATTGATTATGGACATCAGATACCATCAATAGCTGCTGATGCTATGGATACTGATGATGAAAACTGTTCTAA TGGATCAAGAACTTCCTCGACAGATTCCCGTGACCTAAATAAGTCAATTGCTGGAGCCTGTCAGGATCAAACCTTGGATG TGGAGAAAGTGTCAATGGAGCAGGAAATGAAGTTGTCTTCTTCGTTCGAAGAGAAAAGTGGTATTCAAATGGATTCAAAT GGCATTGGAGATGCAAAGGAAAATGATTCGTACAATTTCTATCAGGCTGCTGATGGTCAGCATCTGATTCTTCATCCTCT GAACATGAAGTGTCTACTAAACCATTATGGGAGCTATGATACGCTTCCTCACAGAATAAGTGGAAGGATTCTGCAATTGG AGACAGTTACGCAGTCTGAGGCCATGAGGAGGCGTTATCGATTCCTGAGTCATTTTCCATTAACCACAACATTTCAGCTT TCTGAAATTGATTTGAGTGAGATATTGCCTCCTGAAGCACTGGCCCCATTTATGGATGAAATAAAAAAGCGCTCTAATCA GAGGAAACAACTTGCAAAGAAGGAACAAAGGGACAAAATGAAAGCTGAAGCTTCTGCTACTTATCCTTTTCCTGTACCGA GTTATCAGCTTACTTCTCGTGATGATCCTCCGTTCTCCATGGATGACTTTGAAGCTCTGGGGAATTCAGCCATGTCATCA AGTCCCCCATTGGTTGGGGAGAGAAGATTGTTCTCGAGCGTTACTAGGCTTGGTTTTGCTGCTGGTCATGATTCTCCATC ATTACAAATACAAGAAGAAACTAGCGGTCCATATAATAACAATAAGAGCACTGATTCTTCTGGTACAGCAGGTTCGAGAA ATGGGGAGACACCATCATACTCTAATGTTATATCTAGAGCAGAATCTAATAACAGCTTGAATGCACCAAAGACAAATGAT GTGGGGAAGAAGGGAAAGAAACCCAATCGAGTTCTTCTGTCAACAGCTGGTGTCAGGCGTTATTGA 

Protein sequence (LotjaGi1g1v0632700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSILPSQAQASSSSSSSVQSPNPNPQYGIPINPSPPQPSSSLSPPLNIAIGSLQISDNPGSSTPAAEDSGGPSEKVTELG SPNGMKASPPQNSRTHSRSYSGRRTVGSSPSIGRTGNRNQQAPGSVNSHGSTSSAGRKSQMVNGNYLLNFQYDPISRSQP RGLPPPPLSRRQKRKPYNKDLFLQANYKFIVLDSGNYSPESMDPDKMLQWEDIVCVTFFTPFPVQCPICLEYPLCPQITS CGHIFCFPCILQYLFLGEEDHKSDCCKRCPLCFMMISAKDLYTVHITNVKQHQVGENVDFTFLTRKKDSFTLSHKNKQEI DITSCDNGYLCDPFSKFTLTSDVDLSVRHAISDLDGWLARADSGLVDDLEKLPYVCAAMQQLEQRKKYWNELRAFDSEKS SKLIDYGHQIPSIAADAMDTDDENCSNGSRTSSTDSRDLNKSIAGACQDQTLDVEKVSMEQEMKLSSSFEEKSGIQMDSN GIGDAKENDSYNFYQAADGQHLILHPLNMKCLLNHYGSYDTLPHRISGRILQLETVTQSEAMRRRYRFLSHFPLTTTFQL SEIDLSEILPPEALAPFMDEIKKRSNQRKQLAKKEQRDKMKAEASATYPFPVPSYQLTSRDDPPFSMDDFEALGNSAMSS SPPLVGERRLFSSVTRLGFAAGHDSPSLQIQEETSGPYNNNKSTDSSGTAGSRNGETPSYSNVISRAESNNSLNAPKTND VGKKGKKPNRVLLSTAGVRRY 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 1 138 138 -
SignalP_GRAM_POSITIVE 1 10 10 -
MobiDBLite 1 25 25 -
MobiDBLite 26 42 17 -
MobiDBLite 43 68 26 -
MobiDBLite 84 138 55 -
PANTHER 101 736 636 5.7E-154
MobiDBLite 154 175 22 -
Gene3D 222 309 88 2.7E-10
SUPERFAMILY 225 279 55 7.54E-11
CDD 226 273 48 2.30432E-22
SMART 226 272 47 2.4E-5
Pfam 226 272 47 6.2E-5
ProSiteProfiles 226 272 47 11.575
ProSitePatterns 241 250 10 -
MobiDBLite 417 440 24 -
MobiDBLite 422 440 19 -
MobiDBLite 585 602 18 -
MobiDBLite 585 644 60 -
MobiDBLite 662 741 80 -
MobiDBLite 667 718 52 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0632700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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