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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0637500 |
| Transcript ID | LotjaGi1g1v0637500.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp|P35614|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr|I3T2R1|I3T2R1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0637500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:119264989..119268241) extracted from Lotus japonicus Gifu genome v1.2.
GGAGAAGCAAGATCCAAGATTAACAATCTATCACAAAGCCAATACAAAACATCATTAAAATTTTCGCTATCTATCATCGT TTGGTTTTGGTACACTCCTCCCAGAAACCCTAGGCCGCTCCTCGTTCTTCACACACACCTTCGAGGTTTGTATTCGATTT CATCCTTCACTCTCTTCATTCCATCTATTATTGGATCTGTTGCGAACTCGCTTTTCTGCTTGTCTTCTGATGTTTTCATC TTTGATTTGATTTGTTTCTGGGTAGTAGTAGTGCAAAAACGTGCATCTGGGGGTGTTACTTTCACTTGATTGATGAAACT TTCTGATCAGTTTTTGCAATTTGACTTCAAATTTCCGTGCTTTGACTTGAATTTGAACGAATGATGAAAATGGGTCTGCC AAAAGTAAGGAGAATAGACATAAAAACATTGATTGATTGAGATGGAGTTTGTGGGTTTTGAATTTTATCACCTATACCCA TCAATTTCCTTTACTTGTGGTTGATTGAATTCTTCTATGTTTTACTTTGGAAGAGTCATTCAGGGCCTATCTAATTGGGA TTGCTGTTTGGACTGTACATTTTGGGGGTTTAAAAGCTTTTTTTCCTGTTGGATCTATCTGTTGTGGGTCTTATAGTTCT TTTTTTGTTTTGGGGCCAATGTTCTTTTGTGAAATCATATACCTATACAGTACATTTTGCTTGCTGGGATGACAATTTTG TGCTGTGAATGTGATTGAACTAGCTTCTGCATCTGAATGCTTTGAGCAGCACAAAATATTTATTTCTCTTTCACAATGGA TGGATATTTTCTGTTTTGATTTGAAAGCAAATTTTTGTTAGTGGAAGAGGAGATTTGTTGAATCTTCAATTGAATTTCAT CTTGTGCATGTGTAAGAATTATCACTTGACAAAGCTTGGGAGTTGTTCTTCAAGAGCTGTAGTTCTCTTGTGAGTTCCTA GCTGTGATTTTACTTTCATTTGAGAAAATGAAACCAAAATGTACTGTGTAGGTATATGTTTTCATAATTTTCATTGCCCC CATACTGGATGGGTATATGTTTTCATTATTTTGATTGCCCTCGTAGCTTAGACTTCTATTGTATCTTGGGTTGTGAGTGT GAGTGTGTGACAGTACTAAGTATTAACATACCAATAACCTGGTAGTTTATGGTCATGGCTTGGTCTGCAGTCATGCGTTT ATGTCTTGTAGCTGATATACATAATGTTCCTCCATTTTTGTGCTGATGTGGTCTCAACTGTAGGAGTAAATGTAATAAAA TATTTGTGATTTTGGAAAGGCTTTTCTGTGAAGGTTAACTGGTAGTCAACTGTTATTTTTAATTTGTCCACTCACATGTA TGGTTATGTTTGTAGGTTATTCTTCCTGTGAACACAACTGATGGCTGATCAAGAATCAGACAAGAACATTGAGATATGGA AGATAAAAAAATTGATCAAAGCTCTGGAAGCTGCCAGGGGTAACGGTACCAGCATGATTTCTCTGATCATGCCTCCACGT GATCAAATAGCTCGTGTCACTAAGATGTTGGGAGACGAATTTGGAACTGCTTCAAACATCAAGAGCAGGGTGAACCGGCA ATCAGTGTTGGGAGCCATTACTTCTGCCCAACAGAGGTTGAAACTATATAACAAGGTTCCTCCAAATGGTTTGGTTCTTT ACACTGGTACCATTGTCACTGATGATGGCAAGGAAAAGAAGGTGACAATTGATTTTGAACCTTTCAAGCCTATCAATGCT TCACTTTACCTCTGTGATAACAAGTTTCACACAGAAGCTCTAAATGAACTTTTGGAATCTGATGACAAGTTTGGTTTTAT TGTTATGGATGGAAACGGAACCCTCTTTGGGACTTTAAGCGGAAACACCCGTGAGGTGCTTCATAAGTTTACTGTTGATC TGCCAAAGAAACACGGTAGAGGAGGGCAGTCAGCTTTGCGTTTTGCTCGTCTTCGCATGGAAAAACGGCACAATTATGTT AGGAAGACTGCAGAACTTGCTACTCAGTTTTACATCAATCCTGCTACTAGTCAGCCTAATGTGTCTGGACTCATACTTGC TGGTTCAGCTGACTTCAAGACTGAGCTGAGCCAGTCAGACATGTTTGATCCTCGTCTGCAGGCTAAAATCTTGAATGTGG TTGATGTTTCCTATGGTGGGGAAAATGGCTTTAACCAAGCTATTGAGTTATCTGCTGAGATTTTATCTAATGTGAAGTTC ATACAAGAGAAGCGTTTGATAGGAAAATATTTTGAAGAGATCAGCCAAGACACTGGGAAATATGTCTTTGGGGTTGATGA CACATTGAAGGCTCTGGAGATGGGTGCTGTGGAAACACTCATTGTGTGGGAAAGTTTGGATATTAACAGGTATGTTCTGA AAAATAGTACTACTGCTGAGATTGTAATAAAGCACTTGAACAAGGAACAAGAGGCTGATCAAAGCAACTTCCGGGACTCG GTCACCTCCGCAGAGCTCGAGGTTCAGGAGAAGCTGCCCTTGCTTGAGTGGTTTGCCAATGAGTACAAGCGATTTGGATG CTCTCTGGAATTTGTGACCAACAAATCTCAAGAGGGGTCACAATTTTGCAGGGGGTTTGGTGGCATTGGTGGTATCCTTC GCTACCAGCTTGACATCAGATCGTTCGATGAGTTATCAGACACTGAAGAAGTGTACGAAGATTCTGATTAAGCTTAGATC AGATTGTTCTCAGATGGTGAAGAAGTGTACGAAGATTCTGATTAAGCTCTTATCAAATCGTTCCCAGATGGTGAAGAAGT GTAAGAAGATTTTGGTTAAGTTTTAGTTGCTGTGGAGCTTTTCAATGAATTTTTGGATAATTGTATGAATTACTTTCACC AAGAATTTCCTACACATGATTTGGGTTTTATGGTACCGTGACTTGATTTGATCCTTTGTTGTTTACATACATGATACATT ATTGTTCACTGTTATTTTACTTGCTTCCTAAATCTTCGTTTTTTGTTTGGCAATGCAAGCTTATGGTTTTGACAACTCTA CCAGACTGCCACTAGTTCTTTTCTATATGCTGCTATCAAACTAGTTTTAAAGCGGCTTATTTTTCATCTGACTTTTCAAG AGAAATTTAATTATGTCCTTATAAAAATTTCTCAGTAATTGGTCCCTGATTTTTTTTTTTTTTTTGTGTCCAATTGTTTG AGTCATCAATTTTGATCAGTCAACCGTCCACCATGAATGTGGTGAGCCTAGTC
CDS sequence (LotjaGi1g1v0637500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGATCAAGAATCAGACAAGAACATTGAGATATGGAAGATAAAAAAATTGATCAAAGCTCTGGAAGCTGCCAGGGG TAACGGTACCAGCATGATTTCTCTGATCATGCCTCCACGTGATCAAATAGCTCGTGTCACTAAGATGTTGGGAGACGAAT TTGGAACTGCTTCAAACATCAAGAGCAGGGTGAACCGGCAATCAGTGTTGGGAGCCATTACTTCTGCCCAACAGAGGTTG AAACTATATAACAAGGTTCCTCCAAATGGTTTGGTTCTTTACACTGGTACCATTGTCACTGATGATGGCAAGGAAAAGAA GGTGACAATTGATTTTGAACCTTTCAAGCCTATCAATGCTTCACTTTACCTCTGTGATAACAAGTTTCACACAGAAGCTC TAAATGAACTTTTGGAATCTGATGACAAGTTTGGTTTTATTGTTATGGATGGAAACGGAACCCTCTTTGGGACTTTAAGC GGAAACACCCGTGAGGTGCTTCATAAGTTTACTGTTGATCTGCCAAAGAAACACGGTAGAGGAGGGCAGTCAGCTTTGCG TTTTGCTCGTCTTCGCATGGAAAAACGGCACAATTATGTTAGGAAGACTGCAGAACTTGCTACTCAGTTTTACATCAATC CTGCTACTAGTCAGCCTAATGTGTCTGGACTCATACTTGCTGGTTCAGCTGACTTCAAGACTGAGCTGAGCCAGTCAGAC ATGTTTGATCCTCGTCTGCAGGCTAAAATCTTGAATGTGGTTGATGTTTCCTATGGTGGGGAAAATGGCTTTAACCAAGC TATTGAGTTATCTGCTGAGATTTTATCTAATGTGAAGTTCATACAAGAGAAGCGTTTGATAGGAAAATATTTTGAAGAGA TCAGCCAAGACACTGGGAAATATGTCTTTGGGGTTGATGACACATTGAAGGCTCTGGAGATGGGTGCTGTGGAAACACTC ATTGTGTGGGAAAGTTTGGATATTAACAGGTATGTTCTGAAAAATAGTACTACTGCTGAGATTGTAATAAAGCACTTGAA CAAGGAACAAGAGGCTGATCAAAGCAACTTCCGGGACTCGGTCACCTCCGCAGAGCTCGAGGTTCAGGAGAAGCTGCCCT TGCTTGAGTGGTTTGCCAATGAGTACAAGCGATTTGGATGCTCTCTGGAATTTGTGACCAACAAATCTCAAGAGGGGTCA CAATTTTGCAGGGGGTTTGGTGGCATTGGTGGTATCCTTCGCTACCAGCTTGACATCAGATCGTTCGATGAGTTATCAGA CACTGAAGAAGTGTACGAAGATTCTGATTAA
Protein sequence (LotjaGi1g1v0637500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADQESDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQIARVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRL KLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLS GNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAGSADFKTELSQSD MFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVETL IVWESLDINRYVLKNSTTAEIVIKHLNKEQEADQSNFRDSVTSAELEVQEKLPLLEWFANEYKRFGCSLEFVTNKSQEGS QFCRGFGGIGGILRYQLDIRSFDELSDTEEVYEDSD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 436 | 436 | 6.1E-293 | – | |
| PANTHER | 1 | 436 | 436 | 6.1E-293 | ||
| Gene3D | 1 | 134 | 134 | 1.1E-67 | ||
| SMART | 3 | 139 | 137 | 3.5E-48 | ||
| SUPERFAMILY | 5 | 139 | 135 | 6.93E-58 | ||
| TIGRFAM | 11 | 416 | 406 | 3.6E-126 | ||
| Pfam | 16 | 137 | 122 | 2.5E-19 | ||
| Gene3D | 135 | 276 | 142 | 1.1E-67 | ||
| SUPERFAMILY | 141 | 275 | 135 | 3.01E-47 | – | |
| Pfam | 143 | 276 | 134 | 4.1E-42 | ||
| SUPERFAMILY | 277 | 419 | 143 | 4.12E-50 | ||
| Gene3D | 278 | 436 | 159 | 8.3E-63 | ||
| Pfam | 280 | 417 | 138 | 9.9E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Translation release factor activity | Involved in catalyzing the release of a nascent polypeptide chain from a ribosome. | ||
| Biological process | Translational termination | The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code). |
Expression pattern of LotjaGi1g1v0637500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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