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IPR004403

Description

IPR004403 is a Peptide chain release factor eRF1/aRF1.

<p>This entry represents the eRF1 and aRF1 proteins.</p> <p>Terminating protein synthesis on the ribosome requires the presence of a class I polypeptide chain release factor (RF) to induce peptidyl-tRNA hydrolysis. Bacteria possess two class I RFs; RF1 which recognises UAG and UAA, and RF2 which recognises UGA and UAA. Mitochondrial RFs are related structurally and functionally to those of bacteria. Eukaryotes posses only a single class 1 factor, eRF1, which recognises all three termination codons. Similarly, in all archaeal species where the complete sequence of the genome is available, only a single class I factor, aRF1, has been identified so far. The aRF1 family is highly homologous to the eRF1 family, indicating a common origin and ancestor molecule. The bacterial and mitochondrial class I RFs show no significant sequence similarity with their eukaryotic and archaeal counterparts and are considered to form a separate family. For more information see [[cite:PUB00053182], [cite:PUB00053184], [cite:PUB00053183]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Translation release factor activity Involved in catalyzing the release of a nascent polypeptide chain from a ribosome.
Biological process Translational termination The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code).

Associated Lotus transcripts 17

Transcript Name Description Predicted domains Domain count
PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Glycine max] gi|356560043|ref|XP_003548305.1| 10
PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Vitis vinifera] gi|225460446|ref|XP_002271656.1| 19
PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Cicer arietinum] gi|502106984|ref|XP_004493119.1| 19
PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Glycine max] gi|356531058|ref|XP_003534095.1| 19
PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Glycine max] gi|356559518|ref|XP_003548046.1| 6
Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp|P35614|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr|I3T2R1|I3T2R1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0637500 20
Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp|P35614|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr|I3T2R1|I3T2R1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0637500 20
Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp|P35614|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr|I3T2R1|I3T2R1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0637500 20
Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp|P35614|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr|I3T2R1|I3T2R1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0637500 20
Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp|P35614|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr|I1L3W8|I1L3W8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0182000 20
Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp|P35614|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr|I1L3W8|I1L3W8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0182000 20
Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp|P35614|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr|A0A0R0I9D1|A0A0R0I9D1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0182000 20
Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT1G12920.1 eukaryotic release factor 1-2; Swiss-Prot: sp|Q9LPV8|ERF1Y_ARATH Eukaryotic peptide chain release factor subunit 1-2; TrEMBL-Plants: tr|F6I3Y5|F6I3Y5_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0218100 20
Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp|P35614|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr|A0A0L9VIQ2|A0A0L9VIQ2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0015400 20
Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp|P35614|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr|A0A0L9VIQ2|A0A0L9VIQ2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0015400 20
Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp|P35614|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr|A0A0L9VIQ2|A0A0L9VIQ2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0015400 20
Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp|P35614|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr|A0A0L9VIQ2|A0A0L9VIQ2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0015400 20

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
TIGR03676 TIGRFAM 1 5.88