Domain Predictions — View

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IPR042226

Source: InterPro

Description

IPR042226 is a eRF1, domain 2 superfamily.

<p>This superfamily represents the conserved region in the release factor eRF1, designated domain 2. eRF1 is involved in termination of protein biosynthesis through stop codon recognition at the A site of the ribosome and stimulation of peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre [[cite:PUB00007747]]. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The presence of the essential GGQ motif at an exposed tip of domain 2 suggests that this motif plays a direct role at the catalytic site of the peptidyl transferase centre [[cite:PUB00007747]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 16

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi1g1v0637500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp\|P35614\|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr\|I3T2R1\|I3T2R1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0637500	Domains G3DSA:3.30.1330.30 G3DSA:3.30.420.60 G3DSA:3.30.960.10 IPR004403 IPR005140 IPR005141 IPR005142 IPR024049 IPR029064 IPR042226 PF03463 PF03464 PF03465 PTHR10113 PTHR10113:SF23 SM01194 SSF53137 SSF55315 SSF55481 TIGR03676	20
LotjaGi1g1v0637500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp\|P35614\|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr\|I3T2R1\|I3T2R1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0637500	Domains G3DSA:3.30.1330.30 G3DSA:3.30.420.60 G3DSA:3.30.960.10 IPR004403 IPR005140 IPR005141 IPR005142 IPR024049 IPR029064 IPR042226 PF03463 PF03464 PF03465 PTHR10113 PTHR10113:SF23 SM01194 SSF53137 SSF55315 SSF55481 TIGR03676	20
LotjaGi1g1v0637500.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp\|P35614\|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr\|I3T2R1\|I3T2R1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0637500	Domains G3DSA:3.30.1330.30 G3DSA:3.30.420.60 G3DSA:3.30.960.10 IPR004403 IPR005140 IPR005141 IPR005142 IPR024049 IPR029064 IPR042226 PF03463 PF03464 PF03465 PTHR10113 PTHR10113:SF23 SM01194 SSF53137 SSF55315 SSF55481 TIGR03676	20
LotjaGi1g1v0637500.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp\|P35614\|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr\|I3T2R1\|I3T2R1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0637500	Domains G3DSA:3.30.1330.30 G3DSA:3.30.420.60 G3DSA:3.30.960.10 IPR004403 IPR005140 IPR005141 IPR005142 IPR024049 IPR029064 IPR042226 PF03463 PF03464 PF03465 PTHR10113 PTHR10113:SF23 SM01194 SSF53137 SSF55315 SSF55481 TIGR03676	20
LotjaGi1g1v0683200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Protein pelota homolog; TAIR: AT4G27650.1 Eukaryotic release factor 1 (eRF1) family protein; Swiss-Prot: sp\|Q9ZT87\|PEL1_ARATH Protein PELOTA 1; TrEMBL-Plants: tr\|G7L4Y7\|G7L4Y7_MEDTR Eukaryotic release factor 1 (ERF1) family protein; Found in the gene: LotjaGi1g1v0683200	Domains G3DSA:2.30.30.870 G3DSA:3.30.1330.30 G3DSA:3.30.420.60 IPR004405 IPR005140 IPR005142 IPR029064 IPR038069 IPR042226 PF03463 PF03465 PTHR10853 PTHR10853:SF3 SM01194 SSF159065 SSF53137 SSF55315 TIGR00111	18
LotjaGi2g1v0182000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp\|P35614\|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr\|I1L3W8\|I1L3W8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0182000	Domains G3DSA:3.30.1330.30 G3DSA:3.30.420.60 G3DSA:3.30.960.10 IPR004403 IPR005140 IPR005141 IPR005142 IPR024049 IPR029064 IPR042226 PF03463 PF03464 PF03465 PTHR10113 PTHR10113:SF26 SM01194 SSF53137 SSF55315 SSF55481 TIGR03676	20
LotjaGi2g1v0182000.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp\|P35614\|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr\|I1L3W8\|I1L3W8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0182000	Domains G3DSA:3.30.1330.30 G3DSA:3.30.420.60 G3DSA:3.30.960.10 IPR004403 IPR005140 IPR005141 IPR005142 IPR024049 IPR029064 IPR042226 PF03463 PF03464 PF03465 PTHR10113 PTHR10113:SF26 SM01194 SSF53137 SSF55315 SSF55481 TIGR03676	20
LotjaGi2g1v0182000.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp\|P35614\|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr\|A0A0R0I9D1\|A0A0R0I9D1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0182000	Domains G3DSA:3.30.1330.30 G3DSA:3.30.420.60 G3DSA:3.30.960.10 IPR004403 IPR005140 IPR005141 IPR005142 IPR024049 IPR029064 IPR042226 PF03463 PF03464 PF03465 PTHR10113 PTHR10113:SF26 SM01194 SSF53137 SSF55315 SSF55481 TIGR03676	20
LotjaGi2g1v0218100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT1G12920.1 eukaryotic release factor 1-2; Swiss-Prot: sp\|Q9LPV8\|ERF1Y_ARATH Eukaryotic peptide chain release factor subunit 1-2; TrEMBL-Plants: tr\|F6I3Y5\|F6I3Y5_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0218100	Domains G3DSA:3.30.1330.30 G3DSA:3.30.420.60 G3DSA:3.30.960.10 IPR004403 IPR005140 IPR005141 IPR005142 IPR024049 IPR029064 IPR042226 PF03463 PF03464 PF03465 PTHR10113 PTHR10113:SF26 SM01194 SSF53137 SSF55315 SSF55481 TIGR03676	20
LotjaGi5g1v0015400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp\|P35614\|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr\|A0A0L9VIQ2\|A0A0L9VIQ2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0015400	Domains G3DSA:3.30.1330.30 G3DSA:3.30.420.60 G3DSA:3.30.960.10 IPR004403 IPR005140 IPR005141 IPR005142 IPR024049 IPR029064 IPR042226 PF03463 PF03464 PF03465 PTHR10113 PTHR10113:SF26 SM01194 SSF53137 SSF55315 SSF55481 TIGR03676	20
LotjaGi5g1v0015400.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp\|P35614\|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr\|A0A0L9VIQ2\|A0A0L9VIQ2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0015400	Domains G3DSA:3.30.1330.30 G3DSA:3.30.420.60 G3DSA:3.30.960.10 IPR004403 IPR005140 IPR005141 IPR005142 IPR024049 IPR029064 IPR042226 PF03463 PF03464 PF03465 PTHR10113 PTHR10113:SF26 SM01194 SSF53137 SSF55315 SSF55481 TIGR03676	20
LotjaGi5g1v0015400.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp\|P35614\|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr\|A0A0L9VIQ2\|A0A0L9VIQ2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0015400	Domains G3DSA:3.30.1330.30 G3DSA:3.30.420.60 G3DSA:3.30.960.10 IPR004403 IPR005140 IPR005141 IPR005142 IPR024049 IPR029064 IPR042226 PF03463 PF03464 PF03465 PTHR10113 PTHR10113:SF26 SM01194 SSF53137 SSF55315 SSF55481 TIGR03676	20
LotjaGi5g1v0015400.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp\|P35614\|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr\|A0A0L9VIQ2\|A0A0L9VIQ2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0015400	Domains G3DSA:3.30.1330.30 G3DSA:3.30.420.60 G3DSA:3.30.960.10 IPR004403 IPR005140 IPR005141 IPR005142 IPR024049 IPR029064 IPR042226 PF03463 PF03464 PF03465 PTHR10113 PTHR10113:SF26 SM01194 SSF53137 SSF55315 SSF55481 TIGR03676	20
LotjaGi5g1v0204100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Protein pelota homolog; TAIR: AT4G27650.1 Eukaryotic release factor 1 (eRF1) family protein; Swiss-Prot: sp\|Q9ZT87\|PEL1_ARATH Protein PELOTA 1; TrEMBL-Plants: tr\|V7BDS6\|V7BDS6_PHAVU Protein pelota homolog; Found in the gene: LotjaGi5g1v0204100	Domains G3DSA:2.30.30.870 G3DSA:3.30.1330.30 G3DSA:3.30.420.60 IPR004405 IPR005140 IPR005141 IPR005142 IPR029064 IPR038069 IPR042226 PF03463 PF03464 PF03465 PTHR10853 SM01194 SSF159065 SSF53137 SSF55315 TIGR00111	19
LotjaGi5g1v0204100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Protein pelota homolog; TAIR: AT4G27650.1 Eukaryotic release factor 1 (eRF1) family protein; Swiss-Prot: sp\|Q9ZT87\|PEL1_ARATH Protein PELOTA 1; TrEMBL-Plants: tr\|A0A151U5G2\|A0A151U5G2_CAJCA Protein pelota homolog; Found in the gene: LotjaGi5g1v0204100	Domains G3DSA:2.30.30.870 G3DSA:3.30.1330.30 G3DSA:3.30.420.60 IPR004405 IPR005140 IPR005141 IPR005142 IPR029064 IPR038069 IPR042226 PF03463 PF03464 PF03465 PTHR10853 SM01194 SSF159065 SSF53137 SSF55315 TIGR00111	19
LotjaGi5g1v0204100.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Protein pelota homolog; TAIR: AT4G27650.1 Eukaryotic release factor 1 (eRF1) family protein; Swiss-Prot: sp\|Q9ZT87\|PEL1_ARATH Protein PELOTA 1; TrEMBL-Plants: tr\|A0A151U5G2\|A0A151U5G2_CAJCA Protein pelota homolog; Found in the gene: LotjaGi5g1v0204100	Domains G3DSA:2.30.30.870 G3DSA:3.30.1330.30 G3DSA:3.30.420.60 IPR004405 IPR005140 IPR005141 IPR005142 IPR029064 IPR038069 IPR042226 PF03463 PF03464 PF03465 PTHR10853 SM01194 SSF159065 SSF53137 SSF55315 TIGR00111	19

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
TIGR00111	TIGRFAM	1	6.25