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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0656500 |
| Transcript ID | LotjaGi1g1v0656500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein, putative; TAIR: AT1G68070.1 Zinc finger, C3HC4 type (RING finger) family protein; Swiss-Prot: sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680; TrEMBL-Plants: tr|K7MY22|K7MY22_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0656500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:121611248..121615301) extracted from Lotus japonicus Gifu genome v1.2.
TGTGGTGGTAAAATAGAGTCGTTGTAAAAGCCGTTGTAGAAAGTAGTGGTTGCACCCTATATATACATAATAACTCATCT CCTCTCACTGCAAGATTCTCATCTTCTCTTCAAATTTTGTAATCTTCTCTCATTTGCAATCTTCTCTTGTTCATATTCTC TCATTGTCTCACATTTGAATAATTCATATAATGGATCCAAACAATTTACCCGACCGGGATACATTTTACAACGAATTGGT AGAGGATTTGATGCGAGAGGAGATGGAGTTTTATCAACAACAAGCCAACACTGTTAGGCCCAAGCGAAGAAGAAGAAGAA GAGTGATAAAGCGAGATTGTGAAGCTGGCAACGATCAAAGAGGAAAAACACAATCATTCCAAGAGACAGCAAAAACAAAA GCCAAATCAGAAGCTGAGAATGCTTCTTCAAGCAAAATTGATATGTCAGCCATGGAAGAAGCTGCTGTGAGTGGAAGAAA TGATGTAATGGAAAAAACTGCTTTAGAAAAGAGTTTGGAAAAGAATGACAACCTGATCAAGTGGCATGAAATCCTTATGA AGGACAAATCTAAGATGTCTGAGCAACAAAAAGCAGATCATGAGATCTGTTGTGATTTTATTAGGCGCCAGTTACGCACA TTCGATGAACAAGATTCAAGTACAAAATCTATTTCTATGTAATCTTTTAATTATTTGCTTCTTCCGGCTGTAGATCTTTG CTGTTTCGATTCTAGATTTGAAATCGAAGTTTGTATTATACTTTTAAATTCTTAGGTTATAACTGTGTGTATTTTAATCA TTCAGCTTTTTAATATTATATGAATATGAATGGTGGATAAAAGTGCTGAATCTGTGTTCCGCGTTTCAATTTTTTTAATG AAGACTCCCAAAGTCTTTGCCTAACGTTTCTCCTTTACATACCTGAACCCAGAACCCAAAATCTGTGAAAGCTAGAACCT GTTTGGTTTTGATTTGGAAAAAAATGGTGTATGGAGCAAGTTGTGCGTTGAGCTATGGAACCATTTGGCGTCAACCGACT CTTCATCTTCAATTCCATAGGTGCTCTTCACTCTCTTTCAACTTAAACTTCAACAACAACAAATTATCCACCTTCCCCTT CAACCGCTCTGGACCCTCACTCACCCAGCTCAGCTTCCATGATTCTCGCCTCTCCGCACTCTCGAATGATGGTTCAGGCG GTACCGGTGGTGGTTCTGGTGGGTGGAATCCTGGCGATGGTGATGATGATGGCGTAGAAAAGTGGTCCTTCTTCCTATCA TGGTAAACAAATATTTAAAAAGTAGAAATGATGCGTTTATTTTCATGTTCATGACTTCATCTTGTTTGTAACATACATGT TGGACATAAATCTGAATATACACAACTAGATTTGCTTGGTTAAGTTTATTGAAATAACTTAAAACTCACCTATAAGCTCA TTTAACCTTACCTTATAAAAGAAACTGGATTCGGCTATCGATAAGGACTTGTACATGCTTATAGAGGCTTTTGAGCTTAT TGTAGCAAGTTTTTCAAATAAACTTATAAGAGAGCAATAATTTTCTGTTGTTTATGTGTGCTTTTGTTTCTATTTATTTA CAGTGGCGGGTAATTGAACTTTAATTTTACTCTACAATTCATTGCTTTCAGCGTTAGGAAGGAATTAGAACCTATGAAAT CTCTCGCATCAGCTGCTTGTTGGGTGTTTGGATTTTACTGGTTTTTTGTGGGCGGCCAAGCAGCTATCGAAGATTGTCCA GATCTTTTATGGTAAGAACCTTAATTTGGATCTGCGTTTTCCTTTTTGTTTATAGGACAATTAGAATGAATGCCAAGAAA GCATATAATTGAAGTAGTTACAGATTTGTGCAACAGGATAACCTTCATTTTTATGTAAAACAGCAGTTTAAACAAGAATA GATTAAACTACTTGTGAATGTAGAGCTATAGAGTCTCAATGATCTGTTGAGCCCCTAAGTGTTAAAACTGAAAACTATCT GACTTACAGCTGTTCTTAACTAACTAACAGGCACAGATATAATAAGATGCTCTCGAGTATAGCTTAGGCTCTATACTGCA ATATCCTCCCTTAAGTTTAACTAGGGTGTGAGAGTGGATGTCAAGGGCTTGGTGAGAGTATCAGGAACTGGGTTGTAGTA CGAGGAAACTGTGCTGACTGATGAGGTTATGACAAAGTAATGAAGGAACAGCTCTAACAACCTTAAGCTCTTGTAGGAGA GGCTGAATCCAGAGAACATGATTTGGTTCTGAGAGCTGAGAGCTGAGCTAAGCTTCTATATTCAGCCTCCGTAGAGTTGG TGACAATCATTTGGTTCTGAGAACACCAACACCAAGAGATAAGATTGGAGCCTAAAAAAATGCAGGCACCAGTGATAGAT TTGCAGTCATCTAGGACAATGGCCTAGTCCGCATCAGAGAAGCCCCAAATGTGAAGAGGGGATGTAGTTAGAGGATGCAG AAGAAGGCCACAGGACATAGTACCTTTCAGATAACTCGCAATGTGCTTAACTCCAGTCCAATGAGAGTCCATGATATGTG CAGATAGAAGTCGCCTAATAAAAAGCTCCTATTTCTTGTCCGAGATAGTTAAAAAAGTAGTCTCTTGCTAGACCTGTCCA ACCGGTTAAGCTTGGCTCTATTTTGTTGGAATTGGGGGGCCTCTTGTTGGGCCTGTTGATTAAGGCGGGGGCTTTCTCAA AATACTCACCTCAAGCCAGAATAAATAGTATTATAATATTTTAGTAATTTACCAATGCAGTACTTGTTTATTTCATCTTC TGACATAAAAAGCTCTTATCTAACATTATTCTGACTGTTATGTTTTCTAGTATAATTTAGGGTATTGTAGAGAACCATCA ATGATGTTTTTATCACATTCGTGCAGGGTTATGATGGACTTTGTAGCCTATGATTTATTTTGTACTTACTTTTACATTGG GATGGCGGGTGTAGTTTTCTTTGCTATGATCCTAATTATAGCATTAGCTTATGCTAATGCTACAAGAATCAGAGAAGGTG CATCTGAAGAAGACATCAGGTCACTTCCTAAGTATAGGTTTAGTCAGTCAAATTCATTGATGACAATTGATGACAATATG GAGTCCAATGGAAGTCATACAAGTGAAATTTCTCTCCATCCAGATGATTCTGTGAGTACTGACTGTGTCTCCTTATATCT CCTTATTACTTCCTGAAAATTACTCACCATGATTGATTGATTGCTGTTCGTGATACCATTGAAATACATTATCAAACTAA ACTGCTTCTGATTATGTTGTAGGAATGCTGTATCTGCCTGTGTACATATGATGACGGAACAGAACTCTATCGCCTTCCCT GTACCCACCATTTTCATTGTGAATGCATCAGCCGATGGCTTCGGACTAAAGCAACCTGCCCGCTCTGCACATTAGATATA CATGGAAGTAGCAGACTAGCAGGGTAGCAAGTCAATCTAATGGGATGGTTCAGCCTATTCAAGCCCATTCTATTTTTTTT CCATGATGGAAATAAAGTGTACTATTTTTCTCACCTTCTATCCTGTTTTATTTTATTTTATTTCTAATGTGCATCTAATG TAAAATAGAACCTACATGTTCTGTTTGGTCTTATTCTAACCTGTATATCAAATGTTAGTTGAGTTAGTTATTCACACCTG CATAAGAGACAGAGTAAGTGAGTAACATTCTATTCCTCTCACTTCACAAGGAGATGACTGCATTTACTCTTCATTTCTTC AATGGTTTGTTCTCGTTGCTTAACATGTGCATTATAACACAATGCACAATGGGGCAATTAAACATCCAAACGCATCATGT ATAAAACTATGGCGGGATTGATTCTAAATCAAACCCTCAATTTCAATATCCTACCAATTAGTGTGCGTTTGAATTTTTGT TGAACTCAACGTGGATTCACATTGTAATTCATGTTAAAGTCAACGTGTCAAAATCTTATTTCTTCGATTCACGTTAAACT CAACGTGATAAATTCTAACTTCTTCGTTAGTGCATTGAGAAACATGAAATCACG
CDS sequence (LotjaGi1g1v0656500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTATGGAGCAAGTTGTGCGTTGAGCTATGGAACCATTTGGCGTCAACCGACTCTTCATCTTCAATTCCATAGGTG CTCTTCACTCTCTTTCAACTTAAACTTCAACAACAACAAATTATCCACCTTCCCCTTCAACCGCTCTGGACCCTCACTCA CCCAGCTCAGCTTCCATGATTCTCGCCTCTCCGCACTCTCGAATGATGGTTCAGGCGGTACCGGTGGTGGTTCTGGTGGG TGGAATCCTGGCGATGGTGATGATGATGGCGTAGAAAAGTGGTCCTTCTTCCTATCATGCGTTAGGAAGGAATTAGAACC TATGAAATCTCTCGCATCAGCTGCTTGTTGGGTGTTTGGATTTTACTGGTTTTTTGTGGGCGGCCAAGCAGCTATCGAAG ATTGTCCAGATCTTTTATGGGTTATGATGGACTTTGTAGCCTATGATTTATTTTGTACTTACTTTTACATTGGGATGGCG GGTGTAGTTTTCTTTGCTATGATCCTAATTATAGCATTAGCTTATGCTAATGCTACAAGAATCAGAGAAGGTGCATCTGA AGAAGACATCAGGTCACTTCCTAAGTATAGGTTTAGTCAGTCAAATTCATTGATGACAATTGATGACAATATGGAGTCCA ATGGAAGTCATACAAGTGAAATTTCTCTCCATCCAGATGATTCTGAATGCTGTATCTGCCTGTGTACATATGATGACGGA ACAGAACTCTATCGCCTTCCCTGTACCCACCATTTTCATTGTGAATGCATCAGCCGATGGCTTCGGACTAAAGCAACCTG CCCGCTCTGCACATTAGATATACATGGAAGTAGCAGACTAGCAGGGTAG
Protein sequence (LotjaGi1g1v0656500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVYGASCALSYGTIWRQPTLHLQFHRCSSLSFNLNFNNNKLSTFPFNRSGPSLTQLSFHDSRLSALSNDGSGGTGGGSGG WNPGDGDDDGVEKWSFFLSCVRKELEPMKSLASAACWVFGFYWFFVGGQAAIEDCPDLLWVMMDFVAYDLFCTYFYIGMA GVVFFAMILIIALAYANATRIREGASEEDIRSLPKYRFSQSNSLMTIDDNMESNGSHTSEISLHPDDSECCICLCTYDDG TELYRLPCTHHFHCECISRWLRTKATCPLCTLDIHGSSRLAG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 110 | 110 | - | – | |
| PANTHER | 98 | 276 | 179 | 5.0E-77 | – | |
| PANTHER | 98 | 276 | 179 | 5.0E-77 | – | |
| TMHMM | 110 | 132 | 23 | - | – | |
| Phobius | 111 | 132 | 22 | - | – | |
| Phobius | 133 | 153 | 21 | - | – | |
| TMHMM | 152 | 174 | 23 | - | – | |
| Phobius | 154 | 176 | 23 | - | – | |
| Gene3D | 174 | 275 | 102 | 9.4E-17 | ||
| Phobius | 177 | 282 | 106 | - | – | |
| SUPERFAMILY | 223 | 274 | 52 | 2.52E-17 | – | |
| CDD | 229 | 273 | 45 | 1.75959E-18 | – | |
| Pfam | 229 | 270 | 42 | 1.2E-11 | ||
| ProSiteProfiles | 230 | 271 | 42 | 11.678 | ||
| SMART | 230 | 270 | 41 | 2.2E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0656500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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