Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0659300 |
| Transcript ID | LotjaGi1g1v0659300.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P29514|TBB6_ARATH Tubulin beta-6 chain; TrEMBL-Plants: tr|G7L5V0|G7L5V0_MEDTR Tubulin beta chain; Found in the gene: LotjaGi1g1v0659300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:122037789..122040099) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGGGAGATCCTTCACATTCAGGGTGGACAATGCGGGAACCAGATCGGTTCGAAGTTCTGGGAGGTGGTTTGCGACGA GCACGGCTTAGATCCGACGGGGAGGTACGTCGGGAACTCCGATCTGCAACTTGAGCGCGTGAATGTCTACTACAATGAAG CTTCCTGTGGAAGGTTTGTTCCACGCGCCGTCCTCATGGATTTGGAGCCGGGAACCATGGACAGCGTCCGCACCGGTCCG TATGGCCAGATCTTCCGTCCGGATAACTTCGTGTTTGGACAGTCCGGCGCCGGGAACAACTGGGCGAAAGGACACTACAC TGAAGGTGCTGAGCTTATTGACTCTGTTCTTGATGTTGTGAGGAAGGAAGCTGAGAACTGTGATTGTCTTCAAGGTATGG ATAATTGGTTACTCAATTAAGCAATGTGATTGTTGTGGCGGTTTGTTACTGATCTTTGAATCATTGTGTTTGTAGGGTTT CAGGTGTGTCATTCGTTGGGTGGAGGAACGGGATCGGGGATGGGAACGCTGTTGATTTCGAAGATCAGGGAGGAGTATCC TGATAGGATGATGCTGACGTTCTCTGTGTTTCCTTCACCTAAGGTGTCTGATACTGTTGTGGAGCCTTACAATGCTACTC TGTCTGTTCACCAGTTGGTGGAGAATGCTGATGAGTGTATGGTGCTGGATAATGAGGCGCTCTATGATATCTGCTTCAGG ACTCTCAAATTGACCACTCCTAGCTGTGAGTACACTCGATCAATGCTAATTGTAATTTTCCTGATTGTCAATTGCATTGT TGATCACTAGATACGATGATTGTGTTCATGATGATTGGATTGCAACCAGTAAATAGTTAAACTGGTTTCTTATAGCATGG TTTCTGAAATTTAGTCAAGTTTGTTGCCACTTTAGAATTTTAATGATTGATTTGACTATGAAATGCATATCTGAGAAATT AATTTGACAGATTATGTATGATTTGGGACTATGAGAATTATATTCATCATTTAGGACAAACATGAATTTTATCGTATTTC TCAAGATTAATTTGAACTCCTATTTAATTGGTTGATCTGTTTATTTAAGCTGCCATAGTAAATGTACCCTTTGGGGAGTT TCCCTTCCTTTTTTAATTTGCTACTGATTATTGTGAATTAGATCTGTGGAATACTACTATTTTTGGTCTGGAGAGTGAAG GCTAGTTTCTGAATTTGGATTTTTCTAGATCGAATAGTTTCTATTTCAGGATTTATAAGGCAGATCTGACTATGAAATCA GTAGTGAGGAATCTATTAATCATCAAGAACATGAGTGTAATTTTCATCGTTCCGGGCCAAGCATAACTAGTGCTGCATTT TTTTTTATCATTTTACTCTTATTTAGTTGGTTGATCTGATTAATGTGTCATTATTAATAATGGCATGTCATATTAATAGT GATATGTCACTTTGGGAGATTGTCCATTTTTCTCTTTTAAAATTGCAACTGATCATTGTTAATTTGTTCTATAAAATGCT AATTTTGGCTTTGATCAGTAGTTGGGTGAGGTGGTCCTGGATCTTTGGTTGGTAGTTACTGATAATTTGTAAATTTTTGT TGCAGTTGGTGACTTGAACCACTTGATCTCAGCAACCATGAGTGGTGTCACTTGCTGTCTTCGTTTCCCTGGTCAACTCA ACTCTGACCTCAGGAAACTAGCAGTGAATCTGATCCCATTCCCTCGTCTGCACTTTTTCATGGTTGGGTTTGCTCCCCTC ACCTCCCGTGGCTCTCAGCAGTACCGTGCACTGACGGTCCCTGAACTGACCCAGCAGATGTGGGATTCCAAAAACATGAT GTGCGCTGCTGATCCTCGACATGGTCGCTACCTCACAGCATCTGCCATGTTCAGGGGCAAGATGAGCACCAAAGAAGTGG ATGAGCAAATGATCAATGTCCAGAACAAAAATTCCTCCTACTTCGTGGAGTGGATCCCCAACAACGTGAAGTCCAGTGTC TGTGACATTGCTCCTAAGGGTCTCTCCATGGCATCCACATTCATTGGCAACTCAACCTCAATTCAGGAAATGTTCAGGAG AGTGAGCGAGCAGTTCACTGCCATGTTTAGGAGGAAGGCTTTCTTGCATTGGTACACTGGTGAAGGCATGGATGAAATGG AATTCACAGAAGCTGAGAGCAACATGAATGATCTCGTGTCGGAATACCAGCAATACCAGGATGCTACTGCTGAGGATGAT GGGGAGTATGAAGATGAGGAAGAGGAGGAACAAGAGCACGTGTATGAATGAAGAAATTATTACTAAGCTGA
CDS sequence (LotjaGi1g1v0659300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGGAGATCCTTCACATTCAGGGTGGACAATGCGGGAACCAGATCGGTTCGAAGTTCTGGGAGGTGGTTTGCGACGA GCACGGCTTAGATCCGACGGGGAGGTACGTCGGGAACTCCGATCTGCAACTTGAGCGCGTGAATGTCTACTACAATGAAG CTTCCTGTGGAAGGTTTGTTCCACGCGCCGTCCTCATGGATTTGGAGCCGGGAACCATGGACAGCGTCCGCACCGGTCCG TATGGCCAGATCTTCCGTCCGGATAACTTCGTGTTTGGACAGTCCGGCGCCGGGAACAACTGGGCGAAAGGACACTACAC TGAAGGTGCTGAGCTTATTGACTCTGTTCTTGATGTTGTGAGGAAGGAAGCTGAGAACTGTGATTGTCTTCAAGGGTTTC AGGTGTGTCATTCGTTGGGTGGAGGAACGGGATCGGGGATGGGAACGCTGTTGATTTCGAAGATCAGGGAGGAGTATCCT GATAGGATGATGCTGACGTTCTCTGTGTTTCCTTCACCTAAGGTGTCTGATACTGTTGTGGAGCCTTACAATGCTACTCT GTCTGTTCACCAGTTGGTGGAGAATGCTGATGAGTGTATGGTGCTGGATAATGAGGCGCTCTATGATATCTGCTTCAGGA CTCTCAAATTGACCACTCCTAGCTTTGGTGACTTGAACCACTTGATCTCAGCAACCATGAGTGGTGTCACTTGCTGTCTT CGTTTCCCTGGTCAACTCAACTCTGACCTCAGGAAACTAGCAGTGAATCTGATCCCATTCCCTCGTCTGCACTTTTTCAT GGTTGGGTTTGCTCCCCTCACCTCCCGTGGCTCTCAGCAGTACCGTGCACTGACGGTCCCTGAACTGACCCAGCAGATGT GGGATTCCAAAAACATGATGTGCGCTGCTGATCCTCGACATGGTCGCTACCTCACAGCATCTGCCATGTTCAGGGGCAAG ATGAGCACCAAAGAAGTGGATGAGCAAATGATCAATGTCCAGAACAAAAATTCCTCCTACTTCGTGGAGTGGATCCCCAA CAACGTGAAGTCCAGTGTCTGTGACATTGCTCCTAAGGGTCTCTCCATGGCATCCACATTCATTGGCAACTCAACCTCAA TTCAGGAAATGTTCAGGAGAGTGAGCGAGCAGTTCACTGCCATGTTTAGGAGGAAGGCTTTCTTGCATTGGTACACTGGT GAAGGCATGGATGAAATGGAATTCACAGAAGCTGAGAGCAACATGAATGATCTCGTGTCGGAATACCAGCAATACCAGGA TGCTACTGCTGAGGATGATGGGGAGTATGAAGATGAGGAAGAGGAGGAACAAGAGCACGTGTATGAATGA
Protein sequence (LotjaGi1g1v0659300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MREILHIQGGQCGNQIGSKFWEVVCDEHGLDPTGRYVGNSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGP YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGK MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIAPKGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG EGMDEMEFTEAESNMNDLVSEYQQYQDATAEDDGEYEDEEEEEQEHVYE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSitePatterns | 1 | 4 | 4 | - | ||
| Gene3D | 1 | 263 | 263 | 2.6E-128 | ||
| SUPERFAMILY | 1 | 243 | 243 | 4.19E-103 | ||
| CDD | 2 | 426 | 425 | 0.0 | – | |
| PANTHER | 2 | 445 | 444 | 0.0 | ||
| PANTHER | 2 | 445 | 444 | 0.0 | – | |
| Pfam | 3 | 211 | 209 | 3.3E-69 | ||
| PRINTS | 10 | 30 | 21 | 2.6E-105 | ||
| PRINTS | 41 | 58 | 18 | 6.9E-121 | ||
| SMART | 47 | 244 | 198 | 2.5E-70 | ||
| PRINTS | 51 | 70 | 20 | 2.6E-105 | ||
| PRINTS | 88 | 99 | 12 | 6.9E-121 | ||
| PRINTS | 93 | 104 | 12 | 2.6E-105 | ||
| PRINTS | 106 | 130 | 25 | 2.6E-105 | ||
| PRINTS | 108 | 126 | 19 | 6.9E-121 | ||
| PRINTS | 132 | 150 | 19 | 2.6E-105 | ||
| ProSitePatterns | 140 | 146 | 7 | - | ||
| PRINTS | 151 | 172 | 22 | 2.6E-105 | ||
| PRINTS | 152 | 164 | 13 | 6.9E-121 | ||
| PRINTS | 176 | 189 | 14 | 2.6E-105 | ||
| PRINTS | 190 | 210 | 21 | 2.6E-105 | ||
| PRINTS | 212 | 224 | 13 | 6.9E-121 | ||
| PRINTS | 230 | 239 | 10 | 6.9E-121 | ||
| SUPERFAMILY | 244 | 429 | 186 | 1.07E-79 | ||
| PRINTS | 245 | 258 | 14 | 6.9E-121 | ||
| SMART | 246 | 383 | 138 | 1.6E-40 | ||
| Pfam | 261 | 382 | 122 | 2.8E-40 | ||
| Gene3D | 264 | 373 | 110 | 7.0E-53 | ||
| PRINTS | 265 | 281 | 17 | 6.9E-121 | ||
| PRINTS | 311 | 329 | 19 | 6.9E-121 | ||
| PRINTS | 329 | 343 | 15 | 6.9E-121 | ||
| PRINTS | 347 | 370 | 24 | 6.9E-121 | ||
| PRINTS | 370 | 398 | 29 | 2.6E-105 | ||
| Gene3D | 374 | 445 | 72 | 2.6E-35 | ||
| PRINTS | 377 | 388 | 12 | 6.9E-121 | ||
| Coils | 408 | 428 | 21 | - | – | |
| PRINTS | 412 | 430 | 19 | 6.9E-121 | ||
| MobiDBLite | 419 | 449 | 31 | - | – | |
| MobiDBLite | 428 | 449 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | Structural constituent of cytoskeleton | The action of a molecule that contributes to the structural integrity of a cytoskeletal structure. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Cellular component | Microtubule | Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. | ||
| Biological process | Microtubule-based process | Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins. |
Expression pattern of LotjaGi1g1v0659300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…