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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0671300 |
| Transcript ID | LotjaGi1g1v0671300.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription initiation factor IIB; TAIR: AT3G10330.1 Cyclin-like family protein; Swiss-Prot: sp|P48513|TF2B_SOYBN Transcription initiation factor IIB; TrEMBL-Plants: tr|A0A151U2X6|A0A151U2X6_CAJCA Transcription initiation factor IIB; Found in the gene: LotjaGi1g1v0671300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:123535049..123538650) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCCGACACATTCTGCTCCGACTGCAAGCGCCAGACGGAGGTGGTCTTCGATCACTCAGCCGGCGACACAGTCTGCTC CGAATGCGGCCTCGTCCTCGAGTCTCACTCCATTGATGAAACCTCCGAGTGGCGAACGTTCGCAAACGAGGCCGGCGATA ACGACCCTGTTCGTGTTGGAGGGCCCTCTAACCCGCTTCTCACTGACGGTGGCCTCTCCACTGTTATTGCTAAGACCAAC GGCTCCTCCGGTGAGTTCCTCTCGGCTTCCCTCGGCCGCTGGCAGAATCGCGGTTCGAACCCTGATCGCGGTCTTATCAT GGCGTTTAAGACCATTGCTACCATGTCTGATAGGTAATGGCAAATTGGCAATGCAGCCAAACAGAATAATCTGAAATTCC ATGAATTTAACCTAGTGAATTGATATGTACTGTGTGCTGCATTTCATTTCTTGAATTATCATGATTGTTATCTGTGTAAG TTAAGCATTGTTGTATGGAAACTATCATGTGCTGCATTGTTGTATGATTGAGTTATTAACTCATGTGAGCTGATAAATTT TTCAGGTTGGGACTCGTTGCGACGATCAAGGTATTACATTTTCTCGTATCGGATAGCTTTATACTTGGATTCATTGCATG TCAAGTTTCATGAATTTTTTCATATGGACTATATATGTGATTGATTTTGATTGACTCTATTGTTGTGATATTTTGATAAA TCATGTAGTTTTGGGCTACATTCCTGTTTGACATTAGACTGTAATGGTTTTAATCCGGAAGAAGGGGAGGCTATAAGGTT ACTTCTGGTGTGGTTTGTTTGCATCATTTAACCTTTGAACTTCTTTGGGAATTTCTGGGGAGGTGCTGGGAGCAAAACAT TAAAAGTTATGTTGAAAATTTTATATGTATGGTTTGTAATTTGTACGTTGATTGCTAAGGAATTGGTGAAACTTCACCTG GCATGATGTTTTCATAAAGCAAGTAATGTGATGACTGGATGCTAACTGACTGAGAGAAAGGATCAGTTTTTCATGCCCTC CCATTATTTCAAGCTTTTCAAAAATTTGTATAGTCCTTGCATCATGTTGGTTGCTCCTTGAAACAATTGTTTTGGTTTTT CTTTCTCATCTTTAATTTCAAATTTCATGAAAAGTTTGTATTTTTACTCCTGTTATGCAATCAATTTGAAGGATCGGGCT AATGAGATATATAAGCGGGTTGAAGATCAGAAGTCTAGCAGAGGAAGAAATCAGGACGCATTATTGGCTGCTTGCCTCTA CATAGCTTGTCGACAAGAAGACAAGCCACGCACTGTAAAGGGTACATGCTATGATTTTCTTAACATAGATGCTTCTAGAT CTATCATTCCCTGTATAAACAAGCGTTCCTGAACTGATGGATTTCAAATAGAGATTTGCTCTGTTGCCAATGGAGCCACC AAGAAGGAAATTGGCCGAGCAAAAGAGTACATAGTGAAACAACTGGGTTTGGAGAACGGTCAATCTGTAGAGATGGGAAC AATACATGCTGGGGACTTTATGGTAAGTGTTCTTCATTGATGTGTACTTCTGCAGCACAACTGGATATTTTAATCAATGA CTTAGCTGACTCACATTATTTTTCTATCACTAACTTCAGAGGCGATTTTGTTCTAATCTTGGTATGAATAATCAAGCTGT TAAAGCTGCTCAGGAAGCTGTTCAGAAATCAGAAGAATTTGATATAAGGTAAATTTAGTTTGTCTTGTATTTCTTTAGAC TCCAGAGTATAAAATAGATGTTCGCTGCTAAAGGTTAGCTTGTCGTATGTATTTTTTCATACTAATACAAGATGTGAGTA CAGTAATTTATGAATTCAGTAAAAGCTAGTGCCTCTTCTGGTAGGAAATTTAGATGGAAAAAGTGAGAAGTCTAAGCAGT GTTTCTGTAATAAAATGAACCAACAATATCAGCCTTAGATTAGGATAAATATTCTAGAGTCTAGACTGTGAGATTAGGTT TAGATAACTTTGCCCTTTTGATTGTGGACTAGAAACCTTTGGCTCCTTCAAGTTTTATGCTTCTACCTGTGGGATAAATG GAAACCATGAGGGGTGCCGAGCATGTTTGTGAACAGGGGCAGCTGTGAGGGGCGTGTGACATGCTTGAGAAAAGTGCAAA CTCTGAAGTGTATGTTTGCATGATAAGTGAAGGCTTGGTACATGACGATATTATTATGGGTTACCTTGAATTTAAACTTC TTTTCCATTTAACTAGGAACTAGGCACGGGGTGAGTTACAGGATTAGAACTTCTATTGCACACATATAGGCACATATTGT TTGATTGATGCATTGGACATTTGAATGGTACAAAAAATATTCACTGTTCTCTGCATGGTTACATTGTCATGTTTTTAGGT TTCATTATCATAATTCATAAACTTGCAGTATTGACAATAATATATTAACTATCCCACTTACCCAACCCACCTTAAATTAT TTGGTTGAGGCTGACATTGTCCTATGTGAGAGAATAGGTCAAAGTGAGCCCGGATGGGTTACTCAGCCCATTCCTTTTAC ATATAATATTTAGTATTTATAATTTTCTATTATTTAATGGTCTAACCTCATTTTAACATTTTACTTAGGGTGTTTGAATT TAGCCTTCTTCGAATAGGGAGTAAAAGATACTACATATATTGTGGGAAATCATAATTTATATGATACATTTACTAATTAA ATGAACAATTATTATTATATGCTTGTTTCATTATCTTATTTAGCTTATATTTCTAGTAAACCCTGTCTTATCATTTGTTA CACCCTATCTTATTCAGATCTGCGGATCACTGGGTTTCATAGGGTCTTTGGTCGGGTTCACATTAAAAAATTGACTCCCT AAAATTTAGGATTGGGTGGGGGACCAGTAAAATTCATCAAAATCCGTCCCACAAACACCTTATATTTCACTGCACTTTTA GTTTGTACTTTGTATGACTTCTCTTTTTTCATAATCTTCAGATGGATGCTATAATATTCTTATGATTGATACTAATAACA TCTTTAATTTGCCAGGAGGAGTCCCATATCAATTGCTGCAGCTGTTATATACATCATAACTCAACTTTCGGATGATAAAA AACCTCTCAAAGGTCTGTGACATTTCCTAGAGGAAAACACGAAAGCATGGAATACCAAAAATGGATTGATTACGTTAATT GTTTATGCAAATTGCCTCTCCATTTTCTTATATGTTGTTGTGGTGATAGTTTTTATTTGGAATTAAATTTGATTGTAAGA ATTATTCGAATATTTGCTGCTCTTTATTATAGGAGTTAGAGCCCCGTTTGGATACATACATATTAGAGCTTATCTACTAG AAAAACACTAGATAAGCTTCAATAAGTGCTTTGTTTTGCATTCAAACGGGTTCTTACTTGCTAAGCTAAAAAAAGCATGT ATGTATCTGACCTATTGCGTTTTTGCAGATATATCAGTAGCCACAGGAGTTGCAGAAGGAACCATTAGGAACTCATACAA GGATCTTTACCCCCATGTTTCGAAAATAATACCAAACTGGTATGCAAAAGAAGAGGATTTAAAGAACCTTTGCAGCCCTT GA
CDS sequence (LotjaGi1g1v0671300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAACCTCCGAGTGGCGAACGTTCGCAAACGAGGCCGGCGATAACGACCCTGTTCGTGTTGGAGGGCCCTCTAACCCG CTTCTCACTGACGACCATTGCTACCATGTCTGATAGGTTGGGACTCGTTGCGACGATCAAGGATCGGGCTAATGAGATAT ATAAGCGGGTTGAAGATCAGAAGTCTAGCAGAGGAAGAAATCAGGACGCATTATTGGCTGCTTGCCTCTACATAGCTTGT CGACAAGAAGACAAGCCACGCACTGTAAAGGAGATTTGCTCTGTTGCCAATGGAGCCACCAAGAAGGAAATTGGCCGAGC AAAAGAGTACATAGTGAAACAACTGGGTTTGGAGAACGGTCAATCTGTAGAGATGGGAACAATACATGCTGGGGACTTTA TGAGGCGATTTTGTTCTAATCTTGGTATGAATAATCAAGCTGTTAAAGCTGCTCAGGAAGCTGTTCAGAAATCAGAAGAA TTTGATATAAGGAGGAGTCCCATATCAATTGCTGCAGCTGTTATATACATCATAACTCAACTTTCGGATGATAAAAAACC TCTCAAAGATATATCAGTAGCCACAGGAGTTGCAGAAGGAACCATTAGGAACTCATACAAGGATCTTTACCCCCATGTTT CGAAAATAATACCAAACTGGTATGCAAAAGAAGAGGATTTAAAGAACCTTTGCAGCCCTTGA
Protein sequence (LotjaGi1g1v0671300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKPPSGERSQTRPAITTLFVLEGPLTRFSLTTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIAC RQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLENGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE FDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 28 | 228 | 201 | 9.4E-116 | – | |
| PANTHER | 28 | 228 | 201 | 9.4E-116 | ||
| Gene3D | 29 | 119 | 91 | 1.2E-31 | – | |
| SUPERFAMILY | 31 | 117 | 87 | 8.21E-22 | ||
| SMART | 31 | 113 | 83 | 1.3E-8 | ||
| CDD | 33 | 106 | 74 | 4.72934E-13 | ||
| Pfam | 33 | 97 | 65 | 1.4E-19 | ||
| ProSitePatterns | 65 | 80 | 16 | - | ||
| PRINTS | 73 | 92 | 20 | 2.5E-40 | ||
| PRINTS | 100 | 115 | 16 | 2.5E-40 | ||
| CDD | 128 | 210 | 83 | 5.10716E-9 | ||
| SUPERFAMILY | 128 | 229 | 102 | 3.06E-26 | ||
| Gene3D | 130 | 232 | 103 | 1.7E-27 | – | |
| SMART | 132 | 211 | 80 | 4.3E-7 | ||
| PRINTS | 133 | 151 | 19 | 2.5E-40 | ||
| Pfam | 134 | 202 | 69 | 2.7E-9 | ||
| PRINTS | 165 | 181 | 17 | 2.5E-40 | ||
| PRINTS | 197 | 211 | 15 | 2.5E-40 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | TBP-class protein binding | Interacting selectively and non-covalently with a member of the class of TATA-binding proteins (TBP), including any of the TBP-related factors (TRFs). | ||
| Biological process | Transcription preinitiation complex assembly | The aggregation, arrangement and bonding together of proteins on promoter DNA to form the transcriptional preinitiation complex (PIC), required for transcription. |
Expression pattern of LotjaGi1g1v0671300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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