Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0692000 |
| Transcript ID | LotjaGi1g1v0692000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chaperone protein dnaJ, putative; TAIR: AT5G03160.1 DnaJ P58IPK-like protein; Swiss-Prot: sp|Q9LYW9|DNJ36_ARATH DnaJ protein P58IPK homolog; TrEMBL-Plants: tr|A0A151TUX5|A0A151TUX5_CAJCA DnaJ isogeny subfamily C member 3 isogeny; Found in the gene: LotjaGi1g1v0692000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:126002366..126007080) extracted from Lotus japonicus Gifu genome v1.2.
GGATGACATGTAGAACGTTGTTAAGCTACCAGGTTTCGGTGAGGAAGAACAAATCAAATAACCTGCGTCTGCGTGTTCTG ATTCTGGTGAACAACACTGCAATCGGTGGTTCCTTCCTCTTCGAATGTGAGTGACACAGCAATTCAATCAACACAGAGAG AGTGAGAGAGGAAGAAGATCCCAAATGTTCAATCCTATTGGCTTCTCCATGGATTCCAGGGGATTGCTCTACACCGTCTT CATACTCAATTTCGTTTTGGTCTGCCAACTCATTCTCCTTCAACCTCTCGTCTCCGCAGAAGGTAAACCCTGATCTCTTT CAACTAATTCATTGTTTTTTCATTTTTTGTTTTTGTTTCTCTCGCCGCCATTGTAATTTGGTCTTCGCTTTTCGTAACTT TGATGCTTCGATCGAACTTTGTTTCGTGGGTCCCCTTTTCTATTTCCGTTAGGTTTTTATCTGTCATGGTTTGGATTTCG TGTCTTTGGATATGAGGGATAGTGTAAGGAACTTAAGCTGATCCCTGAATAGCAATGCCAATTTTGTTGTATTTGGCAGT GGAATGGTCACTGTATTTTAGAATAGTGTCAATGAGTTCATTTGATATAGTGGGTTCCTGTTAACCAAATTGCACATTTT TGCTAGGAGTAGGATACATCATGTCATGTATAGTTGGAAAGTTTAGGATTTTAGATTGGTAATTTCATGGGAATTTTAAC TGTCTAGTCTGCCGGTTAACAAGACCTGTTCTGATGTTGCTATGCTATTGGATTTTATGGTTACAAACATGTTATGAGCC CCAAAAATGAAAGTACATGATGGTGTTAGGTGTATGAATCAAAACATTGTATTTCTTGTTAAGTATCTAGACTATTTGGA TAAACTTTTCAGCGAGCACTTGTGAGAAAAGAAGAATTGAAATGATCTTGCAATGACTGAGTATTTGCAATAGTTTCTTC TCACATAATTTGAAACCATTTTCTGCATCTCAGGTTTTGCAAAAGCAGCCTCATCTAACCTTTTCATAAGCTCCTATAAT CTTACTCTTATAAGGGTTTTTTTCATAACTTAGGAATCAAATACTGATGTCAGTTAAGAAATTCCAATAAGCTGGAAGCT TATCCAAACTGGACCATTATAGTACAAGTTCATAACAAAGAGGGTGGAAGGTTGAACTAAATCTTTTGCAGTACATCCTT TGTTAGGTCCTAGTGTTACAGACGTACAGAATTGCACAAGAAAAGTGAACGAGAGAAAAAAGCCAATAATCTTTATTTGA AATGAACAGTTACAAGAGGAAGAGTCCTCCTTTACAAGGCTCCACTGTGTTTTCTCAGTCTACAACAACAATCTTCATTT CCTCTCCTCTGCTACTCCTTACAACCCTCCTATTTATCATCTTTTATTAGAGCATTGCGAGAATGCGAGAAACAAAGAAA GTAGCACTCTAAAGTGAAATTTTGGTTTTAATGCATCATAAAAATTGCAAATCCAAGTATGTTTATTCCACTATGATGTG GTATATGGTAGTTTGCCTCTCCAATTTATTTTTTTGTATTTATTGAGGAAGTCTCGTTTAACCATTAGGGTTAGAAATAA AATTTATGTGCACAATTCCACTGGAAAATGTTGTTCCTATTTTTATTGCTCCTTTATAAGTTCTGTACCGGTTCAATGTC CACCTGTCTGTTACCTAAACAATCATTGCTTTGTTTTTGGATGTGGTCAGGTGGAAAATCTGGAAATGCTGCTGAGTTGT TTGAGAGAGCATCACAAAGTATAAAAGTGAAACATTATACTGAGGCACTTGATGATCTAAATGCTGCGATAGAAGCAGAT CCAACCCTTTCGGAAGCATACCTTTTCCGTGCATCAGTTCTTCGTCGGTCATGCAGGTGTGGTTCATTTGCAAGTATTAA CTTTCCCCCAGTTTTTAAATCTTAGAGAGAACAATCCTTGTTAAACACTGGGTTAAGCTTTTGAAGTGTTAATCAGTGAA TGTCAGTTCCAAGCCTTGTTATCACCATTAAAGTTTTGCGAAAACAAATCTCCCCCCCCCCCCCCCCACCATAACGGGAA ACCCCTAATATTGGGATTATATTTAGTTTCATTAAGTAACCATCAGACCACTCGATCCCCGCCTCACCTCCTGAGTCTCT CAAACTCCTAATTGGAAAGTTATATCATTCAGGTGCTTTTTGGCTAATGTAGATATGAACAATCTGAGAGGAGCTACAAA AAGTTTCTGGAGTTAAAACCTGGAGATTCCGCTGCAGAAAAGGAGCTTTCTCAGATGTTGCAGGCACAAAGTGCCCTAGA AACAGCTCAATCCCTCTATGAGTTGGGCAACTTCTCAAAATCTTTGGAATATATTGATAAAGTTGTTCTTGTTTTTTCTC CTGATTGCACTAAGGTAACACTTTTATGCTCTTTCTGTTCCATAACTATCATTTCAGTTTTGTGGCTTTATAATTTCACT ATCGAGTCAAAAAGTGAAAGCCCAAGCATTGGGTTTGGCTGGGAAGTGGTATGCATGATAAACATGTTAATTCTATATAC ATTGTTTTCTACAGGCTAAGCTTCTTAAAGTGAAGTTGTTGATAGGTGACAAAGATTATGAGGGTGCCATTGCAGAGTCT GGATTTATGCTCAAGGAAGATGAAAATAATTTAGAGGCATTATTGTTGCGAGGTCGTGCATATTACTATTTAGCTGATCA TGATGTTGCCACGAGGTTTGTCTTGTGGAAAATGATGTTGAATTATTGTAGCATTCTTATAATTTATGTAAATGATCCAT CTTATATCCGGACATACGTTCAGGCATTACCAAAAAGGTCTCCGTCTCGATCCAGAGCACAGTGAACTTAAAAAAGCATA TTTTGGATTGAAAAACCTACTCAAAAAGAAAAAATCTGTAAGCCCCTTTATTTTGCACCCTATCTCCAGTTAACTTTCCT TTATTCTCTCTTCTTGATGTTCAAGATTTGTTGATTTTTTATTTCTATGTGCTTACTAAAGGCTGAGGATAATGCTAGTA AGGGAAAGCTAAGGGTGGCTGTGGAGGAATTCAAGGCTGCACTTGCTGTTGACCCTAACCATCTTGCACATAATGTACAT CTTCATCTTGGCTTATGTAAAGTGCTAGTCAGGCTTGGCAGAGGAAAAGACGCCTTGGACAGTTGTAGTGAAGCTCTTAA GATCGATGAGGAGCTTATTGAAGCTCTTGTTCAGGTTCACTATAATCTTTAACATCATTGTGCTGGTTTTGTCTTTTAGC ACTATTTTTCTGGGCTTTTGTGGTATTCAATTAAAATTTTATGTACGCTGCACTTAATTACTTGATGCTCTTGGATGCAG AGGGGAGAAGCTAAACTCTTGACAGAGGATTGGGAGGGAGCTGTGGAGGACATGAAATCCGCTGCTGAAAAATCTCCTCA GGTTATATATTTTGAACTCATATATCTTGTTCCAGATCACAATGATAAATTAGAATTTTGGAGTAGTTTTATAACCTTAA TAGTTTTGTAGAGTAGAGTTTGATTAGCAGTTTCTTATAACTGCAGGATATGAATATCCGTGAAGCATTAATGAGGGCCG AAAAAGCTTTAAAGATGAGCAAACGCAAGGATTACTACAAGATTTTGGGAATTTCAAAAACTTCTTCCGCTGCTGAGATA AAACGTGCCTACAAGAAACTTGCCTTACAATGGCACCCAGATAAGAATGTTGCCAATAGGGAAGAAGCAGAGGCTAAATT TCGAGAAATAGCCGCGGCATATGAGGTCTTTAGTCCAGAAAAAATGCCTTTTTTTTTACTTTTTATGTAACCTGTCCTTA GCTTCTCTACTTCAGTCTTTAATCAGGGAAATGCTTATGTGATTGTTGGATATGTTTATCATGCTTACACAACCATTGTT TGCTAGTGTTGCAGTTTTTTTTTTGCTGTGGATATTATATTTCTGTTGCATAACTGATTGTTGCACTGTGTTTTAGGTTC TAAGTGATGAAGACAAACGTACAAGATTTGACAGAGGGGAGGACCTTGAAGACATGGGAGGCATGGGTGGTGGTGGAGGT TTCAACCCCTTTGGTGGTGGGGGGCAGCAGTTCCACTTCACTTTTGACGGTGGCTTCCCCGGAGGAGGTGGGGGAGGGTT TCCGGGTGGTGGATTTGGAGGCGGCTACGAATTTCATTTTTGATTGGGAAAGCCATATTACTCCTGATATTTTGGCATAG TTGAAGTTATAATAGCTTTTGTTGATTTCCTCAAGGGACCACAGCTATGATATTGACTAATCACTTGCTAACGGTTGTTG AGGTAGATACATAGGTCATCCCCAAATGCTTGCAAGTCATGAAATGTGCTTTAGGGACATTTTTCTTTGTGCAGAAGTGA TGGGGTAGGAGTTAGTTAAGGAGACGCTTTTTGATGTAACCCCATTTCATTTTATGTGGTGGTCGTCACTCTTGCGGAGA CTTTGAATTGTAGCAACCACTGTACTTTTGTTTACATATTTATGTCAATTGAATTGCTTCACACATAACATCATGGAAAT TTTGGTAGTTTTAGAGTCTAATTGTTGAACTGTCGTGTTAAGTTTTAAATTTGTTTGCTATACCCGTTTCCGTGGCTCTT CAATTTAGTGTATGCTTGGATATATGGCGGTGATACCAAAATTACGGTGGACATAAGTAATTTTTCTTAATTTTT
CDS sequence (LotjaGi1g1v0692000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCAATCCTATTGGCTTCTCCATGGATTCCAGGGGATTGCTCTACACCGTCTTCATACTCAATTTCGTTTTGGTCTG CCAACTCATTCTCCTTCAACCTCTCGTCTCCGCAGAAGGTGGAAAATCTGGAAATGCTGCTGAGTTGTTTGAGAGAGCAT CACAAAGTATAAAAGTGAAACATTATACTGAGGCACTTGATGATCTAAATGCTGCGATAGAAGCAGATCCAACCCTTTCG GAAGCATACCTTTTCCGTGCATCAGTTCTTCGTCGGTCATGCAGATATGAACAATCTGAGAGGAGCTACAAAAAGTTTCT GGAGTTAAAACCTGGAGATTCCGCTGCAGAAAAGGAGCTTTCTCAGATGTTGCAGGCACAAAGTGCCCTAGAAACAGCTC AATCCCTCTATGAGTTGGGCAACTTCTCAAAATCTTTGGAATATATTGATAAAGTTGTTCTTGTTTTTTCTCCTGATTGC ACTAAGGCTAAGCTTCTTAAAGTGAAGTTGTTGATAGGTGACAAAGATTATGAGGGTGCCATTGCAGAGTCTGGATTTAT GCTCAAGGAAGATGAAAATAATTTAGAGGCATTATTGTTGCGAGGTCGTGCATATTACTATTTAGCTGATCATGATGTTG CCACGAGGCATTACCAAAAAGGTCTCCGTCTCGATCCAGAGCACAGTGAACTTAAAAAAGCATATTTTGGATTGAAAAAC CTACTCAAAAAGAAAAAATCTGCTGAGGATAATGCTAGTAAGGGAAAGCTAAGGGTGGCTGTGGAGGAATTCAAGGCTGC ACTTGCTGTTGACCCTAACCATCTTGCACATAATGTACATCTTCATCTTGGCTTATGTAAAGTGCTAGTCAGGCTTGGCA GAGGAAAAGACGCCTTGGACAGTTGTAGTGAAGCTCTTAAGATCGATGAGGAGCTTATTGAAGCTCTTGTTCAGAGGGGA GAAGCTAAACTCTTGACAGAGGATTGGGAGGGAGCTGTGGAGGACATGAAATCCGCTGCTGAAAAATCTCCTCAGGATAT GAATATCCGTGAAGCATTAATGAGGGCCGAAAAAGCTTTAAAGATGAGCAAACGCAAGGATTACTACAAGATTTTGGGAA TTTCAAAAACTTCTTCCGCTGCTGAGATAAAACGTGCCTACAAGAAACTTGCCTTACAATGGCACCCAGATAAGAATGTT GCCAATAGGGAAGAAGCAGAGGCTAAATTTCGAGAAATAGCCGCGGCATATGAGGTTCTAAGTGATGAAGACAAACGTAC AAGATTTGACAGAGGGGAGGACCTTGAAGACATGGGAGGCATGGGTGGTGGTGGAGGTTTCAACCCCTTTGGTGGTGGGG GGCAGCAGTTCCACTTCACTTTTGACGGTGGCTTCCCCGGAGGAGGTGGGGGAGGGTTTCCGGGTGGTGGATTTGGAGGC GGCTACGAATTTCATTTTTGA
Protein sequence (LotjaGi1g1v0692000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFNPIGFSMDSRGLLYTVFILNFVLVCQLILLQPLVSAEGGKSGNAAELFERASQSIKVKHYTEALDDLNAAIEADPTLS EAYLFRASVLRRSCRYEQSERSYKKFLELKPGDSAAEKELSQMLQAQSALETAQSLYELGNFSKSLEYIDKVVLVFSPDC TKAKLLKVKLLIGDKDYEGAIAESGFMLKEDENNLEALLLRGRAYYYLADHDVATRHYQKGLRLDPEHSELKKAYFGLKN LLKKKKSAEDNASKGKLRVAVEEFKAALAVDPNHLAHNVHLHLGLCKVLVRLGRGKDALDSCSEALKIDEELIEALVQRG EAKLLTEDWEGAVEDMKSAAEKSPQDMNIREALMRAEKALKMSKRKDYYKILGISKTSSAAEIKRAYKKLALQWHPDKNV ANREEAEAKFREIAAAYEVLSDEDKRTRFDRGEDLEDMGGMGGGGGFNPFGGGGQQFHFTFDGGFPGGGGGGFPGGGFGG GYEFHF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 12 | 12 | - | – | |
| PANTHER | 9 | 486 | 478 | 4.4E-261 | – | |
| Phobius | 13 | 32 | 20 | - | – | |
| TMHMM | 13 | 32 | 20 | - | – | |
| Phobius | 33 | 486 | 454 | - | – | |
| Gene3D | 38 | 364 | 327 | 7.2E-70 | ||
| ProSiteProfiles | 46 | 79 | 34 | 7.287 | ||
| SMART | 46 | 79 | 34 | 5.5 | ||
| ProSiteProfiles | 46 | 346 | 301 | 29.303 | ||
| SUPERFAMILY | 50 | 362 | 313 | 1.39E-26 | ||
| Pfam | 59 | 113 | 55 | 0.0042 | – | |
| SMART | 80 | 113 | 34 | 0.59 | ||
| ProSiteProfiles | 80 | 113 | 34 | 8.319 | ||
| SMART | 126 | 159 | 34 | 100.0 | ||
| ProSiteProfiles | 126 | 159 | 34 | 5.458 | ||
| SMART | 195 | 228 | 34 | 0.0042 | ||
| ProSiteProfiles | 195 | 228 | 34 | 11.122 | ||
| Pfam | 196 | 228 | 33 | 2.8E-5 | ||
| Coils | 238 | 258 | 21 | - | – | |
| ProSiteProfiles | 241 | 274 | 34 | 5.871 | ||
| ProSiteProfiles | 279 | 312 | 34 | 5.517 | ||
| SMART | 279 | 312 | 34 | 18.0 | ||
| ProSiteProfiles | 313 | 346 | 34 | 7.611 | ||
| SMART | 313 | 346 | 34 | 14.0 | ||
| SUPERFAMILY | 360 | 471 | 112 | 9.16E-32 | ||
| Gene3D | 365 | 476 | 112 | 1.2E-30 | ||
| SMART | 366 | 425 | 60 | 4.1E-30 | ||
| Pfam | 367 | 430 | 64 | 6.0E-26 | ||
| ProSiteProfiles | 367 | 433 | 67 | 22.305 | ||
| CDD | 367 | 422 | 56 | 3.12459E-22 | ||
| PRINTS | 369 | 387 | 19 | 6.9E-22 | ||
| PRINTS | 387 | 402 | 16 | 6.9E-22 | ||
| Coils | 403 | 423 | 21 | - | – | |
| PRINTS | 405 | 425 | 21 | 6.9E-22 | ||
| ProSitePatterns | 410 | 429 | 20 | - | ||
| PRINTS | 425 | 444 | 20 | 6.9E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0692000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…