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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0704400 |
| Transcript ID | LotjaGi1g1v0704400.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pre-mRNA-processing factor 39; TAIR: AT1G04080.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q4KLU2|PRP39_XENLA Pre-mRNA-processing factor 39; TrEMBL-Plants: tr|A0A151T5W3|A0A151T5W3_CAJCA Pre-mRNA-processing factor 39; Found in the gene: LotjaGi1g1v0704400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:127256396..127261247) extracted from Lotus japonicus Gifu genome v1.2.
ATGCAGCAAGACTGGGCCCGCCTTGCCATGATCTACACCAGAATATTGGAGAATCCAAATCAGCAGCTGGATCGGTATTT TAACAGGTGATTTCTTGTTTTGATTTTATTACCCTCCCCTTTAGTTTAATTATTATTGTATTTTGCATGTATGCTCTTTT CTTACATTTTGTTTGGGTAATATGACTCCTTCATGGAAATGGTGTCGCAGCTTCAAGGAGTTAGCTGGCAGTCGACCATT GTCAGAATTACGGACTGCTGATGAAGCTGCTGCAGTGACAGGTGTTGCTTCAGAGGCTACTGACCAACCTCTTGAGGGAG AGGACCGTCCTGATGGTGCAGAGATTTCTCCTAAACCTGTAAGTGCTGGCTTAACAGAGGCAGAAGAGTTGGAGAAGTAT ATCGCCATTAGAGAAGAGCTGTATAAGAAAGCTAAAGAGTTCGATTCTAAGATCATTGGTTTTGAAACAGCCATCAGGAG GCCCTACTTTCATGTACGGCCCCTCAATATTGGAGAGCTTGAGAACTGGCATAACTACCTGGACTTTATAGAAAGAGAAG GTGACTTAAGCAAGGTAACTGAGTTGGTTTCTTTTAAGTGTGCATACGCTTCCTAGTTTTTTTATCTTACTGATTGACTT ACAGTAAGTAATATCTGCTGTATCATATGTTTTATTGGCTAATCCCTTGGATGAAGCAACTTTTTAATCGAGAAATTGAA CTGAGACTAAAGCATGGGCCTTCAAATTGGTTTCTTGAGGCTAAGTACTTCAAACCCTAATTTTTCAGTGGACATTCTAG GTTCATCATGTGTTTGTGAAAGTTCATTCCTTTTAAATTGCGAATGTTATGCATGCAGGTATCTTCTAATCTTCCTAAAC ATCTGTCTCAGGCAAGGAGGGTCCCTCATTTCATATTTGAGGGGCCTCTCTGTCCCGCTAAGGAGTATTTCTTAATGCTT TGTGTTTTCCTTATGTTCTATATTCTTGATTTTTGCTTGTGTATATATATCATAAGGGACATTTTTTACGATATTTTTTT GTTGTGTGAATCAGATTGTCAAGTTGTATGAGAGATGTGTGATTGCATGTGCCAATTATCCTGAGTACTGGATACGCTAT GTTTTATGTATGGAAGCTAGTGCAAACATGGATCTTGCAAATAATGTGCTTGCTCGGGCAACCCAAGTATTTGTGAAGGT AATTTCATTTAAATACTAAAGCTGTAGGGCTGGAAATCATTTGCAACATTTTAACTTATCTTCTTCCCTCGAGTTTTTAA GCATTGAAGTGAAAGGGCTTCATATATAGTGGACTCTGGTACTATTTTCTGCTGTACCAAAAAAAAAGTGGACTCTGGTA CCTAGCCACTTGTTGCTATGTTGCTTTTTACTCAAGCTAACTACTGGACTCCTACTGAGATAATAGTTAATGGAACTTGA ATTTGTTTGATGTTGTACCTTAATTATCTTGTTTGTTTGCCATAATGCAGAGACAACCAGAGATACATCTATTTTGTGCT CGGTTCAAGGAGCAGGCGGGAGATATAGCTGGTGCTAGAGCTGCGTATCAACTAGTGCATACTGAAACTTCTCCTGGTCT TCTTGAAGCAATAATAAAACACGGCAATATGGAATATCGACTGGTATGCCGACTTATGCAAGTGTTAATAGATTGTGGCT TAATTTAAGTTAAATAGCTTAACACAGCATTTCTATTCCTTGATAATTATTACAGGGTGAGTTGGAGGATGCATTCTCGT TGTATGAACAGGCTATTGCCATTGAGAAAGGAAAAGAACATTCACAAACATTGCCAATGTTGTTTGCTCAGTATTCTCGA TTTGTTTATTTGGTATGTTTGACTACAGATTTGTGTCCAAATGTCCTTCTGGTCCTTTGTTCTTAATTCATGCTTGTCAT TGGTTGAATATGTATTCTAATTTTTTGTTGGCTTTGTTTCATCAATTTATACGTATATTTTAATTTTAAGTTTTCTCATT GGTTTTATAAGATGATACTTACAGTTGCATTGATGAAAGTTGGCTACATTTTTTGTTAAGCTGTCTGCATTCTGTTAAAT GATAATGATCTTGGGCGTAATGTGCTTCTCATTTATGTCAATAAATAAAGCATGCAAATGGCTATTGAAAAGAAATATGA ATCATAACTTAAAATTTAGCATGACTATTCTTTTATGTTCGAACTGTTTTAGTTTTAGCCCTCCGGTTGTGTTACTATAT TGTACTGTGTTGTGTGGTAATTGTCTTCCGTTTTTCTTGATATCCTTCTGTATCGTTTTGCCATCAGGCTTCTGAGAATG CAGAAAAAGCAAGAGAGATTCTAGTTGGGGGGCTTGAAAATGTTTCTTTGTCTAAGCCACTACTTGAGGTCAGTCCCTAC CTCTTTAACTATAAATGGGTTTTAACTTTCCTTACGTGATACTGTTGGAGATTCTTCTCTTTTTTAATTCCATGTTCTAT ACAGGCTTTATTGCATTTTGAGGCTATTCAACCACAGCCTAAGCGAGTTGATATGGACTTTCTGGAGTCATTGGTTGTCA AATTCATAGTGCCCAATCCAGAGAGCCCTACTGTAGCAAGTGCTGCAGAGCGTGAGGAACTCTCCAGCATTTTTTTGGAG GTGATTCCTTATAATAAGGATGTTTAAATGAGTTTCCTTGAGGAAGAAAATATTTTATTGCGTGTGACTGTGTTTTTTTT TTTTATAATTGTCCCATGGAAAGACCCTCTGAATGCTTATTACCAAAAAATTTGTTTTTGAGAATCCAGCTGGGTTGATT GTTCCATGGAATTGGTTCTATTGAGTAGGTTAAGGCTAAGTTGATATGATAGAGTATTGTAAGGGACACTTCACTCACAT CCCATTAAACAAATAAACAACCTATTAAAACAATCTACCTATACCTAATCAATGGTTGTGGCAGGTGTGAATCATGATCT ATAGTTAGATAGTTATATGGTTAATGATGGGTAAATTTTGGCTAAATAAAGTGACCCAGATGACATGCATGGATGGTCAA ATTGGTTTTAGTTAACTTTAACCTTGACTATCCATGTTAGATTGGATGGTCAAGGTTAGCTACTTTCATACTTGATATGC TTCCAGTTGATATGTAACTTAGCTGTTTGAACTGATTCCATAGAAAAAAAATTCGTGTGTATCTTGTTATAATTAGTTAC TCTGACCTACTTTTAATAAGATTCTGAAATGATTTAACATTTTAGGCTGTGCTGATTCATTTATGTATTGGGTTATAATA AGCTAAAAGGGTGTGCAGACAATTTAGCAGTGACGAAATGTTTCAACTTCCCTAAGTTTTACCTTTGTTTCTACGAACAC TCTTGCAAGTTGCAATGCTGATAGATTTTTAATAGCTTCATCAAATATGCATGTGATTGGTCGTATATGTCTTCGTATTG TTTGGTTTTATTTTTAACAGCCTTAATTTAATACATTTTCTACATGGTACACCTATTTAATGGTTTTTATTCTGATTTCC AAAGACCTGTGATGTCTGAAGATTGTGTCTCTTACCCATGGACTTTCTGTTGACTTTCCAGTTTTTAAATCTCTTTGGAG ATGTTCAATCTATCAAGAGGGGCGAGGATAGGCATGCCAAACTTTTCTTGCCACATAGGAGCATGTCGGAGTTGAAGAAA CGTAGTGCAGAAGATTTCTTAGCTTCCAACAAAACTAAAGTCTCAAGAACTTATTCTGTTCAGTCACCTGCTCAATCTGT GATGGGTGCATATCCCAATGCACCGAACCAATGGACTAACTATGGAGCACAACCTCAAACTTGGCCAGCAGTCCCACAAA TACAAGGACAACAATGGCCTGCTGGCTACAACCAGCAGGTAGATTATCGTTTTCTTTATTTGCTACAACCTGGAAGAAAT TGTTTTACATTTTAGCAAGTCTTTCAAACAATGCAATGTTAAACCACTTCTGTGTCACACTTACTAATTAGTAAGTAGTA ATTGTTCAATACTAACCACTTCTGCAGTTGTAATTAAAAATGGACGTGGACACCCAAGATGCAACACATTTCTATTCCGT TGAATTGGAATTTCTGCTTCATAAATTATGATGAAATGGGTTGACTGCTCCTTTGATTTAAATATACCTTGTACCCACAT AAGACATCTTCCTGCATCTTTATTTACATGTCAAGAATGTGCTTCATTTATGCTATAAGCTTTACAGTACTGAAATGTCA TATATTCATATCGTTGTTCAGGAGTAAACAATTTTTGTACTTGTGTTATTTGTTTGTCATGGTTTATGTGTGTATTCTAT TATATGTACTTACATATGCAATGCATTGATGAAGGTGTTACTTTTAATCCATTATTTAGTTGCTTTTTAACTGAAACTTT TGTGGTCATTTTTGTCATCATTTTATCCCCTTTATGTACTGGTCGATGAATTCATATGTTTCTAAGTGATTCATTCTGAT TTGATGCAGGCTTCCTATGGGACTTATCCTGGATATGGGGGCAACTATGCAAACCCGCAGTTGCCTACGTCAGTCCCACA AAATACTGCTGCATACGGAGCTTATCCTCCTGCATATCCTGTACAGGTATAAAGCAGCTTCAGCTCTTCAGTTATAGTGA TTATTTGGCCCGATATGTTCTGTGATCAGTGGTTTCTACAGTTGATTATTTCCCTACCGTAGAGAATCTCTTTAAGCATC ATAGTTTAACTGCACGAACACTTGTTATGCATTACTCCCTCCGTTCCACAAAGTTTGTTGTTTAAGGTTGTGGTACAAAG ACTAAGATGACAATTATTAATAGTATAATGTTACTATAGTACCATTATTTAA
CDS sequence (LotjaGi1g1v0704400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGCAAGACTGGGCCCGCCTTGCCATGATCTACACCAGAATATTGGAGAATCCAAATCAGCAGCTGGATCGGTATTT TAACAGCTTCAAGGAGTTAGCTGGCAGTCGACCATTGTCAGAATTACGGACTGCTGATGAAGCTGCTGCAGTGACAGGTG TTGCTTCAGAGGCTACTGACCAACCTCTTGAGGGAGAGGACCGTCCTGATGGTGCAGAGATTTCTCCTAAACCTGTAAGT GCTGGCTTAACAGAGGCAGAAGAGTTGGAGAAGTATATCGCCATTAGAGAAGAGCTGTATAAGAAAGCTAAAGAGTTCGA TTCTAAGATCATTGGTTTTGAAACAGCCATCAGGAGGCCCTACTTTCATGTACGGCCCCTCAATATTGGAGAGCTTGAGA ACTGGCATAACTACCTGGACTTTATAGAAAGAGAAGGTGACTTAAGCAAGATTGTCAAGTTGTATGAGAGATGTGTGATT GCATGTGCCAATTATCCTGAGTACTGGATACGCTATGTTTTATGTATGGAAGCTAGTGCAAACATGGATCTTGCAAATAA TGTGCTTGCTCGGGCAACCCAAGTATTTGTGAAGAGACAACCAGAGATACATCTATTTTGTGCTCGGTTCAAGGAGCAGG CGGGAGATATAGCTGGTGCTAGAGCTGCGTATCAACTAGTGCATACTGAAACTTCTCCTGGTCTTCTTGAAGCAATAATA AAACACGGCAATATGGAATATCGACTGGGTGAGTTGGAGGATGCATTCTCGTTGTATGAACAGGCTATTGCCATTGAGAA AGGAAAAGAACATTCACAAACATTGCCAATGTTGTTTGCTCAGTATTCTCGATTTGTTTATTTGGCTTCTGAGAATGCAG AAAAAGCAAGAGAGATTCTAGTTGGGGGGCTTGAAAATGTTTCTTTGTCTAAGCCACTACTTGAGGCTTTATTGCATTTT GAGGCTATTCAACCACAGCCTAAGCGAGTTGATATGGACTTTCTGGAGTCATTGGTTGTCAAATTCATAGTGCCCAATCC AGAGAGCCCTACTGTAGCAAGTGCTGCAGAGCGTGAGGAACTCTCCAGCATTTTTTTGGAGTTTTTAAATCTCTTTGGAG ATGTTCAATCTATCAAGAGGGGCGAGGATAGGCATGCCAAACTTTTCTTGCCACATAGGAGCATGTCGGAGTTGAAGAAA CGTAGTGCAGAAGATTTCTTAGCTTCCAACAAAACTAAAGTCTCAAGAACTTATTCTGTTCAGTCACCTGCTCAATCTGT GATGGGTGCATATCCCAATGCACCGAACCAATGGACTAACTATGGAGCACAACCTCAAACTTGGCCAGCAGTCCCACAAA TACAAGGACAACAATGGCCTGCTGGCTACAACCAGCAGGCTTCCTATGGGACTTATCCTGGATATGGGGGCAACTATGCA AACCCGCAGTTGCCTACGTCAGTCCCACAAAATACTGCTGCATACGGAGCTTATCCTCCTGCATATCCTGTACAGCCCTC CGTTCCACAAAGTTTGTTGTTTAAGGTTGTGGTACAAAGACTAAGATGA
Protein sequence (LotjaGi1g1v0704400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQQDWARLAMIYTRILENPNQQLDRYFNSFKELAGSRPLSELRTADEAAAVTGVASEATDQPLEGEDRPDGAEISPKPVS AGLTEAEELEKYIAIREELYKKAKEFDSKIIGFETAIRRPYFHVRPLNIGELENWHNYLDFIEREGDLSKIVKLYERCVI ACANYPEYWIRYVLCMEASANMDLANNVLARATQVFVKRQPEIHLFCARFKEQAGDIAGARAAYQLVHTETSPGLLEAII KHGNMEYRLGELEDAFSLYEQAIAIEKGKEHSQTLPMLFAQYSRFVYLASENAEKAREILVGGLENVSLSKPLLEALLHF EAIQPQPKRVDMDFLESLVVKFIVPNPESPTVASAAEREELSSIFLEFLNLFGDVQSIKRGEDRHAKLFLPHRSMSELKK RSAEDFLASNKTKVSRTYSVQSPAQSVMGAYPNAPNQWTNYGAQPQTWPAVPQIQGQQWPAGYNQQASYGTYPGYGGNYA NPQLPTSVPQNTAAYGAYPPAYPVQPSVPQSLLFKVVVQRLR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 504 | 504 | 5.9E-172 | – | |
| PANTHER | 1 | 504 | 504 | 5.9E-172 | – | |
| MobiDBLite | 53 | 80 | 28 | - | – | |
| SUPERFAMILY | 91 | 393 | 303 | 2.78E-36 | ||
| SMART | 146 | 178 | 33 | 0.0013 | ||
| ProSiteProfiles | 236 | 269 | 34 | 9.496 | ||
| ProSiteProfiles | 236 | 269 | 34 | 8.349 | ||
| SMART | 250 | 285 | 36 | 1100.0 | ||
| SMART | 291 | 323 | 33 | 800.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of LotjaGi1g1v0704400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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