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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0723300 |
| Transcript ID | LotjaGi1g1v0723300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Crooked neck-like protein 1; TAIR: AT5G41770.1 crooked neck protein, putative / cell cycle protein; Swiss-Prot: sp|Q9BZJ0|CRNL1_HUMAN Crooked neck-like protein 1; TrEMBL-Plants: tr|I1LGA1|I1LGA1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0723300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:129463648..129467605) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCTTCATCGAGAGAAGGAGACCCGAACCTGGGTTACCTGACCCGGAAGGACACGGAGGTGAAGCTTCCTCGCCCGAC CCGCGTCAAGAACAAAACCCCCGCTCCGATTCAAATCACCGCCGAGCAGATTCTCCGTGAGGCTAGGGAGCGCCAGGAGG CGGAGATACGCCCACCGAAGCTGAAAATCACCGACCCCCACGAGCTCGGCGAGTATCGCCTCCGCAAGCGGAAGGAGTTC GAGGACCTGATTCGCCGTGTCCGATGGAACACCAGCGTCTGGCTCAAGTACGCGCAGTGGGAGGTCTCGCAAAACGACTT CAAACGTGCGCGTTCTGTTTGGGAGCGCGCGCTGGAGGTGGATTACAAGAACCACACGCTGTGGCTGAAGTATGCGGAGG TGGAGATGAAGAACAAGTTCATCAACCATGCGAGGAATGTGTGGGATCGCGCCGTCACGCTGTTGCCGAGAATTGACCAG CTCTGGTATAAGTATATTCACATGGAGGAGATGCTGGGCAATGTAGCTGGCGCGCGGCAGGTTTTCGAGCGGTGGATGAA GTGGATGCCGGACCAGCAGGGCTGGCTCTCGTACATTAAGTTCGAGCTCCGGTACGGGGAGATTGACCGTGCCAGGGGGA TTTTCGAGCGGTTCGTGCTGTGCCACCCGAGGGTTGGCGCTTGGATACGCTATGCAAAGTTTGAGATGAAGGGTGGTGAA GTTGCCAAGGCAAGGAATGTGTACGAGCGGGCGGTGGAGAAGCTTGCGGACGATGAGGAGGCGGAGCAGCTTTTCGTTGC ATTTGCGGAGTTTGAGGAGCGGTGTAAGGAGTCGGAGCGTGCCAGGTGTATATACAAATTTGCACTTGATCATATACCCA AGGGAAGGGCGGAGGATTTGTATAGGAAGTTTGTGGCGTTTGAGAAGCAGTATGGGGACAGGGAAGGGATTGAGGATGCT ATTGTGGGGAAGAGAAGGTTTCAGTATGAGGATGAAGTGAGGAAAAACCCCTTGAATTATGATTCCTGGTTTGACTATAT AAGGTTGGAAGAGAGTGTGGGGAGTAAGGAAAGGGTCAGGGACGTTTATGAGAGAGCTATTGCCAATGTTCCTCCTGCGG AGGAGAAGCGGTACTGGCAGCGATATATCTATTTGTGGTATGTTTGATTTGAATTTCATTTGATCATTTCCCCATGTTGT CGTTTTTCTTTCCAGTCTTTTACATTTTGTATTGATATTAATCATTTGTTTTTCGCATGTTACATAGGATTAATTATGCA CTCTATGAAGAGCTTGATGCTGGAGATGTGGAGCGAACAAGAGATGTATACAAGTATGTTGTTTTTTATAAGCTTGAAGT TTGTTAATTGATAATAATTGTTTTTAGGTTCGCTCTAGATGTCACATGTCACTATCATGAATAAACCTCTGTTCTATCCA TCAATCTTATTGGTAAACTGCTTAAAACTTGGCAACTTGGAATCTTGGTAAGTGTTAAGAGAATGTGATACCTCAATGAG GATATGTATTTGTGAAAGCAGCAAATTACCTTTAGCTTATCTGCAACAAATTTATCTGCGGGACATTGATGACATTAAAA TGCAAATTGGTTAGTAAATGTGCAGTGGAGTTCGAAGCTTTCATACTAATAATTTAATAGGCAAAAAGGAGAGGTAAAAA AATTAGAGGGGGTGTGGGGGGGGGGGGGGGGGGTTTATTGAGGAGAATAGTCCTTTGTTAATCTGTAATTCCTTTCTTCT GAATTCTGCAACCACATTCAATTTATCTTTTACCATCTGTTTTTTACATTTTTCTGGTCAATTTCTGTCATCAGTTACTA TATCAGTATTAACACTAGTAAATTTATCCTATTGAATTGAGTATTGAGACTAATTCTGTTCTTTGTGGCTTCCATTTCTT CAGGGAGTGTCTTAACTTAATACCTCACAAAAAGTTCTCGTTCGCGAAGATGTGGCTTCTAGCAGCCCAATTTGAAATAC GTCAGCTGAATCTCACAGCTGCTCGTCAAATATTAGGAAATGCTATTGGAAAGGCTCCTAAAGATAAGGTAATATATATG TGGATGAAAATATTATAGCTTCTTTTAATTCCAGCGTGATCAACTTTCTCACTCAGTTTCATCTTTGATGACAGATTTTT AAGAAGTATATAGAGATAGAACTGCAGCTTGGTAACATTGATCGATGCAGAAAATTGTATGAAAAATATTTGGAGTGGGC GCCTGAAAATTGCTATGCTTGGAGCAAGTATGCAGAATTGGAGAGATCTTTATCTGAGACTGATCGAGCTAGATCCATAT TTGAGCTTGCAATTGCCCAGCCAGCTTTGGACATGCCTGAGCTGTTGTGGAAGGTACACACAACTTATTTCTTGTGCAAA TGAATGCATGGACTTAGTTGCATTTAACTATGCGACTCATTCTTCACGCAGCTCATGAACTTAAATTACATTTCAGGGTT GGATGGATTAGGAAATTTTAGGAATGGGCTGGGTAGCCATTTGATTCTGTAGCTTTTTTATCCTATAGCTTTCTGATTGT AATTGTTCAGTCATAAAATATCATGTATTTTACGTTCTGACCTAACCGTATACCTCCATTGTCAGTTAGTATTTGATCTC ACAAAAATTTGCACAGCATCTTTAACTTTATATATAAAATGTTTAACAAATTTTAAGGACTGGGCCATTATTATGCTTCT TAATTTATTTAACCCTAGGAATAACAATTACTCTGTAGAATGGTTTTAGCATTGCTCTGTGAATATGAGATTTGTTATTG CCTCTGTTTAAAGGTCCAGTGTGCCTGATGAAGACATGTAATATAGTTAACTATTCCCCCGCTGTCTTTCAGCAATAATC ACGTTGTTTTCTTTTATGTTTCCTTCTTTCTCCTTTTTTGTCATATTGTAATGCATACCTTGTCGAAGATATATGGTGTT CATAATCTAAGTGCAAAATTTGAAATACAATATAGGCATACATTGACTTTGAGACTGCTGAGGGTGAATTTGAGAGAGCA AGAGCACTTTATGAAAGGCTTCTTGATCGAACAAAGCACTTGAAGGTATGGATAAGCTATGCAGAATTTGAGGCAACAGC TGTGGATGAGGGTTTAGACTTACCAGAAGAAGAACAAAAGAAGCAATGCATTCAGCGTGCTAGAAGTATGTAATCCATAT GCTGTTAATTTATGATTGAATGTCTTCAATTTGAACTGAAGTGTAATAATTTTTTGATTTTCTTTATATTTCTTTCTGTG CCTGCACCAGGGGTGTTTGAAGAAGCTCTAAACTACTTCAGATCATCGGCTCCTGATTTGAAAGAAGAAAGGGCAATGCT ATTGGAAAAATGGCTCAACCTGGAGGCTTCATCTGGTGAACTGGGTGATGTTAGCTTAGTCCAGTCTAAGCTGCCCAAGA AGCTCAAGAAGAGAAGACATGTTCCCACTGAAGATGGTTCTTCTAGGTATGTAGCTAATTCATTGTTTATTCTCAAGAGT AAGTTTAAATGGCTACTTATGCAACATGGTCAGTGCTATTATGTTGGAGTTAGTCCACTTTTAGCATGACTGGATCAGTT TTTTTCATTAGAATCAATTCTGACACCAAACAGCCACTGACAGCAGCTTCTCTCCATAATTGATTCTGATCAATTGTAGA AAGATTTCCAAACATGCACTTAAACTTTTGGCTTTGTGCATGTTCAGAAGCCATCAATTGTCTGCTTTTTTCACTTTTAA TTTTACAACTCAGGTATTTTTTTAGTTATCTATTTTGTTAGCCTATTTCCTACTTCATTTTGGTTAATTTAATTTGGCAG AATCGAAGAATTCATCGACTATTTATTTCCTGAGGAAACTCAGACCACCAATCTCAAGATCTTGGAAGCTGCTTACAAAT GGAAGAAGCAAAAATTGTCTTCGGATGATGATGATTAG
CDS sequence (LotjaGi1g1v0723300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCATCGAGAGAAGGAGACCCGAACCTGGGTTACCTGACCCGGAAGGACACGGAGGTGAAGCTTCCTCGCCCGAC CCGCGTCAAGAACAAAACCCCCGCTCCGATTCAAATCACCGCCGAGCAGATTCTCCGTGAGGCTAGGGAGCGCCAGGAGG CGGAGATACGCCCACCGAAGCTGAAAATCACCGACCCCCACGAGCTCGGCGAGTATCGCCTCCGCAAGCGGAAGGAGTTC GAGGACCTGATTCGCCGTGTCCGATGGAACACCAGCGTCTGGCTCAAGTACGCGCAGTGGGAGGTCTCGCAAAACGACTT CAAACGTGCGCGTTCTGTTTGGGAGCGCGCGCTGGAGGTGGATTACAAGAACCACACGCTGTGGCTGAAGTATGCGGAGG TGGAGATGAAGAACAAGTTCATCAACCATGCGAGGAATGTGTGGGATCGCGCCGTCACGCTGTTGCCGAGAATTGACCAG CTCTGGTATAAGTATATTCACATGGAGGAGATGCTGGGCAATGTAGCTGGCGCGCGGCAGGTTTTCGAGCGGTGGATGAA GTGGATGCCGGACCAGCAGGGCTGGCTCTCGTACATTAAGTTCGAGCTCCGGTACGGGGAGATTGACCGTGCCAGGGGGA TTTTCGAGCGGTTCGTGCTGTGCCACCCGAGGGTTGGCGCTTGGATACGCTATGCAAAGTTTGAGATGAAGGGTGGTGAA GTTGCCAAGGCAAGGAATGTGTACGAGCGGGCGGTGGAGAAGCTTGCGGACGATGAGGAGGCGGAGCAGCTTTTCGTTGC ATTTGCGGAGTTTGAGGAGCGGTGTAAGGAGTCGGAGCGTGCCAGGTGTATATACAAATTTGCACTTGATCATATACCCA AGGGAAGGGCGGAGGATTTGTATAGGAAGTTTGTGGCGTTTGAGAAGCAGTATGGGGACAGGGAAGGGATTGAGGATGCT ATTGTGGGGAAGAGAAGGTTTCAGTATGAGGATGAAGTGAGGAAAAACCCCTTGAATTATGATTCCTGGTTTGACTATAT AAGGTTGGAAGAGAGTGTGGGGAGTAAGGAAAGGGTCAGGGACGTTTATGAGAGAGCTATTGCCAATGTTCCTCCTGCGG AGGAGAAGCGGTACTGGCAGCGATATATCTATTTGTGGATTAATTATGCACTCTATGAAGAGCTTGATGCTGGAGATGTG GAGCGAACAAGAGATGTATACAAGGAGTGTCTTAACTTAATACCTCACAAAAAGTTCTCGTTCGCGAAGATGTGGCTTCT AGCAGCCCAATTTGAAATACGTCAGCTGAATCTCACAGCTGCTCGTCAAATATTAGGAAATGCTATTGGAAAGATTTTTA AGAAGTATATAGAGATAGAACTGCAGCTTGGTAACATTGATCGATGCAGAAAATTGTATGAAAAATATTTGGAGTGGGCG CCTGAAAATTGCTATGCTTGGAGCAAGTATGCAGAATTGGAGAGATCTTTATCTGAGACTGATCGAGCTAGATCCATATT TGAGCTTGCAATTGCCCAGCCAGCTTTGGACATGCCTGAGCTGTTGTGGAAGGCATACATTGACTTTGAGACTGCTGAGG GTGAATTTGAGAGAGCAAGAGCACTTTATGAAAGGCTTCTTGATCGAACAAAGCACTTGAAGGTATGGATAAGCTATGCA GAATTTGAGGCAACAGCTGTGGATGAGGGTTTAGACTTACCAGAAGAAGAACAAAAGAAGCAATGCATTCAGCGTGCTAG AAGGGTGTTTGAAGAAGCTCTAAACTACTTCAGATCATCGGCTCCTGATTTGAAAGAAGAAAGGGCAATGCTATTGGAAA AATGGCTCAACCTGGAGGCTTCATCTGGTGAACTGGGTGATGTTAGCTTAGTCCAGTCTAAGCTGCCCAAGAAGCTCAAG AAGAGAAGACATGTTCCCACTGAAGATGGTTCTTCTAGAATCGAAGAATTCATCGACTATTTATTTCCTGAGGAAACTCA GACCACCAATCTCAAGATCTTGGAAGCTGCTTACAAATGGAAGAAGCAAAAATTGTCTTCGGATGATGATGATTAG
Protein sequence (LotjaGi1g1v0723300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSREGDPNLGYLTRKDTEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPKLKITDPHELGEYRLRKRKEF EDLIRRVRWNTSVWLKYAQWEVSQNDFKRARSVWERALEVDYKNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRIDQ LWYKYIHMEEMLGNVAGARQVFERWMKWMPDQQGWLSYIKFELRYGEIDRARGIFERFVLCHPRVGAWIRYAKFEMKGGE VAKARNVYERAVEKLADDEEAEQLFVAFAEFEERCKESERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDA IVGKRRFQYEDEVRKNPLNYDSWFDYIRLEESVGSKERVRDVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDV ERTRDVYKECLNLIPHKKFSFAKMWLLAAQFEIRQLNLTAARQILGNAIGKIFKKYIEIELQLGNIDRCRKLYEKYLEWA PENCYAWSKYAELERSLSETDRARSIFELAIAQPALDMPELLWKAYIDFETAEGEFERARALYERLLDRTKHLKVWISYA EFEATAVDEGLDLPEEEQKKQCIQRARRVFEEALNYFRSSAPDLKEERAMLLEKWLNLEASSGELGDVSLVQSKLPKKLK KRRHVPTEDGSSRIEEFIDYLFPEETQTTNLKILEAAYKWKKQKLSSDDDD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 35 | 35 | - | – | |
| PANTHER | 7 | 689 | 683 | 0.0 | – | |
| PANTHER | 7 | 689 | 683 | 0.0 | – | |
| MobiDBLite | 11 | 27 | 17 | - | – | |
| Gene3D | 71 | 320 | 250 | 1.0E-53 | ||
| SMART | 71 | 103 | 33 | 1.3 | ||
| SUPERFAMILY | 81 | 195 | 115 | 6.58E-24 | ||
| ProSiteProfiles | 91 | 192 | 102 | 12.528 | ||
| SMART | 105 | 137 | 33 | 1.9E-5 | ||
| SMART | 139 | 171 | 33 | 7.9E-5 | ||
| SMART | 173 | 204 | 32 | 2.5E-4 | ||
| SUPERFAMILY | 194 | 263 | 70 | 3.45E-14 | ||
| SMART | 206 | 237 | 32 | 4.4E-6 | ||
| Pfam | 207 | 235 | 29 | 1.6E-13 | ||
| ProSiteProfiles | 225 | 258 | 34 | 6.903 | ||
| SMART | 239 | 274 | 36 | 1.3E-4 | ||
| Coils | 241 | 261 | 21 | - | – | |
| SUPERFAMILY | 266 | 518 | 253 | 2.98E-42 | ||
| SMART | 276 | 310 | 35 | 3.0 | ||
| SMART | 320 | 352 | 33 | 250.0 | ||
| Gene3D | 321 | 516 | 196 | 2.1E-43 | ||
| SMART | 354 | 388 | 35 | 1.8E-6 | ||
| SMART | 398 | 434 | 37 | 8.8E-5 | ||
| ProSiteProfiles | 450 | 553 | 104 | 8.115 | ||
| SMART | 464 | 496 | 33 | 1.4E-4 | ||
| SMART | 498 | 532 | 35 | 1.5E-4 | ||
| Gene3D | 517 | 619 | 103 | 5.8E-13 | ||
| SUPERFAMILY | 521 | 621 | 101 | 9.8E-12 | ||
| Coils | 529 | 549 | 21 | - | – | |
| SMART | 534 | 565 | 32 | 1.4E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of LotjaGi1g1v0723300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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